CmoCh07G006560 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh07G006560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description50S ribosomal protein L7/L12
LocationCmo_Chr07 : 2952356 .. 2952862 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATCAATTGCCTCCAAACTTCCGGCCAAAGCTCTAGGGAGACTTCTCACTATCGCTCCGAGACAATTACTTGTTCGGTCCCTCGGCACCGTCTCCGAGGAACGAACCCAGAAACTCCAGCGGATCGCCGATGACCTCCTTGGCCTCACTAAAATCGAACGACACGATTATGCCATCCTCTTCCGGCTGAAAATGGGGTTAAACAAGTACGGCCCTGCAGTTTCTGGTCTAAGCGCATCAGGTTCGGCGTCCGCCGGATCTGCATCCGCCGTAGCAAAAGAGGCTGAGAAAACCGTGTTCGATATAAAGCTCGAGAAATTTGATGCGGCAGCGAAGATCAAGATCATAAAGGAGGTGAGGACGTTCACTGATTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCTGTGGTGCTGAAGAAGGGTGTAACGAAAGATCAAGGAAACCCAATTATTGAAAAGCTGAAGGAATTGGGAGCTACCGCGGTACTGGAATGA

mRNA sequence

ATGCCATCAATTGCCTCCAAACTTCCGGCCAAAGCTCTAGGGAGACTTCTCACTATCGCTCCGAGACAATTACTTGTTCGGTCCCTCGGCACCGTCTCCGAGGAACGAACCCAGAAACTCCAGCGGATCGCCGATGACCTCCTTGGCCTCACTAAAATCGAACGACACGATTATGCCATCCTCTTCCGGCTGAAAATGGGGTTAAACAAGTACGGCCCTGCAGTTTCTGGTCTAAGCGCATCAGGTTCGGCGTCCGCCGGATCTGCATCCGCCGTAGCAAAAGAGGCTGAGAAAACCGTGTTCGATATAAAGCTCGAGAAATTTGATGCGGCAGCGAAGATCAAGATCATAAAGGAGGTGAGGACGTTCACTGATTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCTGTGGTGCTGAAGAAGGGTGTAACGAAAGATCAAGGAAACCCAATTATTGAAAAGCTGAAGGAATTGGGAGCTACCGCGGTACTGGAATGA

Coding sequence (CDS)

ATGCCATCAATTGCCTCCAAACTTCCGGCCAAAGCTCTAGGGAGACTTCTCACTATCGCTCCGAGACAATTACTTGTTCGGTCCCTCGGCACCGTCTCCGAGGAACGAACCCAGAAACTCCAGCGGATCGCCGATGACCTCCTTGGCCTCACTAAAATCGAACGACACGATTATGCCATCCTCTTCCGGCTGAAAATGGGGTTAAACAAGTACGGCCCTGCAGTTTCTGGTCTAAGCGCATCAGGTTCGGCGTCCGCCGGATCTGCATCCGCCGTAGCAAAAGAGGCTGAGAAAACCGTGTTCGATATAAAGCTCGAGAAATTTGATGCGGCAGCGAAGATCAAGATCATAAAGGAGGTGAGGACGTTCACTGATTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCTGTGGTGCTGAAGAAGGGTGTAACGAAAGATCAAGGAAACCCAATTATTGAAAAGCTGAAGGAATTGGGAGCTACCGCGGTACTGGAATGA
Homology
[Close]
BLAST of CmoCh07G006560 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 3.0e-15
Identity = 54/128 (42.19%), Postives = 76/128 (59.38%), Query Frame = 1 

Query: 40  LQRIADDLLGLTKIERHDYAILFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAEKT 99
           ++ I + L  LT ++  + +     + G++   P     SA+G     SA+AVA   EKT
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGE----SAAAVA---EKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA  KI +IKEVR  T+LGLKEAKD VE  P  LK GV+KD+   + +KL+
Sbjct: 64  EFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 123

Query: 160 ELGATAVL 168
             GAT +L
Sbjct: 124 AAGATIIL 124

[Close]
BLAST of CmoCh07G006560 vs. Swiss-Prot
Match: RL7_RHIL3 (50S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplL PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-14
Identity = 55/126 (43.65%), Postives = 73/126 (57.94%), Query Frame = 1 

Query: 40  LQRIADDLLGLTKIERHDYAILFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAEKT 99
           L +I DDL  LT +E  + + L   K G++   P         +A+AG A+A   E EKT
Sbjct: 4   LAKIVDDLSSLTVLEAAELSKLLEEKWGVSAAAPVAV------AAAAGGAAAAVVEEEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            FD+ L +   A KI +IKEVR  T LGLKEAKDLVE  P  +K+GV K +   I +KL+
Sbjct: 64  EFDVILVEA-GANKINVIKEVRAITGLGLKEAKDLVEAAPKAVKEGVNKAEAADIKKKLE 122

Query: 160 ELGATA 166
           + GA A
Sbjct: 124 DAGAKA 122

[Close]
BLAST of CmoCh07G006560 vs. Swiss-Prot
Match: RL7_RHIE6 (50S ribosomal protein L7/L12 OS=Rhizobium etli (strain CIAT 652) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 7.4e-14
Identity = 58/127 (45.67%), Postives = 76/127 (59.84%), Query Frame = 1 

Query: 40  LQRIADDLLGLTKIERHDYAILFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAEKT 99
           L +I +DL  LT +E  + + L   K G++   P      A G   AG A+A A+E EKT
Sbjct: 4   LAKIVEDLSSLTVLEAAELSKLLEEKWGVSAAAPVAVAAVAGG---AGGAAAPAEE-EKT 63

Query: 100 VFDIKLEKFDAAA-KIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKL 159
            FD+ L   DA A KI +IKEVR  T LGLKEAKDLVE  P  +K+GV+K +   I +KL
Sbjct: 64  EFDVILT--DAGANKINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGVSKAEAADIKKKL 123

Query: 160 KELGATA 166
           ++ GA A
Sbjct: 124 EDAGAKA 124

[Close]
BLAST of CmoCh07G006560 vs. Swiss-Prot
Match: RL7_SYNJB (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rplL PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.7e-14
Identity = 51/134 (38.06%), Postives = 79/134 (58.96%), Query Frame = 1 

Query: 37  TQKLQRIADDLLGLTKIERHDYAILFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEA 96
           ++++ +I ++L  L+ +E  +         G++   PA   + A+  A+A +A A A E 
Sbjct: 3   SERVAKILEELKALSLLEASELVKAIEETFGVSAAAPAGGMVMAAPVAAAAAAPAAAPEP 62

Query: 97  --EKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPI 156
             E+T FD+ LE   A  KI I+K VR  T LGLK+AKDLVE  P  +K+GV K++ N I
Sbjct: 63  VEEQTAFDVILEAVPADKKIAILKVVRELTGLGLKDAKDLVEAAPKPVKEGVAKEEANDI 122

Query: 157 IEKLKELGATAVLE 169
            +KL+E GAT  ++
Sbjct: 123 KKKLEEAGATVKIK 136

[Close]
BLAST of CmoCh07G006560 vs. Swiss-Prot
Match: RL7_RHILW (50S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rplL PE=3 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 1.3e-13
Identity = 54/126 (42.86%), Postives = 71/126 (56.35%), Query Frame = 1 

Query: 40  LQRIADDLLGLTKIERHDYAILFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAEKT 99
           L +I DDL  LT +E  + + L   K G++   P         +A+AG A     E EKT
Sbjct: 4   LAKIVDDLSSLTVLEAAELSKLLEEKWGVSAAAPVAV------AAAAGGAGPAVVEEEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            FD+ L +   A KI +IKEVR  T LGLKEAKDLVE  P  +K+GV K +   I +KL+
Sbjct: 64  EFDVILVEA-GANKINVIKEVRAITGLGLKEAKDLVEGAPKAVKEGVNKAEAADIKKKLE 122

Query: 160 ELGATA 166
           + GA A
Sbjct: 124 DAGAKA 122

[Close]
BLAST of CmoCh07G006560 vs. TrEMBL
Match: A0A0A0KLI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495700 PE=4 SV=1)

HSP 1 Score: 279.3 bits (713), Expect = 3.2e-72
Identity = 153/168 (91.07%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 1   MPSIASKLPAKALGRLLTIAPRQLLVRSLGTVSEERTQKLQRIADDLLGLTKIERHDYAI 60
           MPSIASKLPAK+L RLLT+APR LLVRSL TV+EERTQKL+RIAD+LL LTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSA GSA+AGSA+A  KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CmoCh07G006560 vs. TrEMBL
Match: F6HWW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1232g00020 PE=3 SV=1)

HSP 1 Score: 212.6 bits (540), Expect = 3.7e-52
Identity = 123/170 (72.35%), Postives = 140/170 (82.35%), Query Frame = 1 

Query: 1   MPSIASKLPAKALGRLLTIAPRQLLVRSLGTVSEERTQKLQRIADDLLGLTKIERHDYAI 60
           M SI +++P K L R L  A  + L  +  T     TQKL+RIAD+LL LTK+ER+DY+I
Sbjct: 1   MHSITTRIPYKTLVRPLFFAQSRNLCSASAT-----TQKLERIADELLDLTKLERYDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSASGSASAGSASAVA--KEAEKTVFDIKLEKFDAAAKIKIIK 120
           LFRLK+GLNKYGPAVSGL+++ SASAGS SA A  K AEKT FDIKLEKFDAAAKIKIIK
Sbjct: 61  LFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIK 120

Query: 121 EVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           EVRTFTDLGLKEAKDLVEK PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 121 EVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 165

[Close]
BLAST of CmoCh07G006560 vs. TrEMBL
Match: A5C502_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035768 PE=3 SV=1)

HSP 1 Score: 206.8 bits (525), Expect = 2.0e-50
Identity = 112/134 (83.58%), Postives = 124/134 (92.54%), Query Frame = 1 

Query: 37  TQKLQRIADDLLGLTKIERHDYAILFRLKMGLNKYGPAVSGLSASGSASAGSASAVA--K 96
           TQKL+RIAD+LL LTK+ER+DY+ILFRLK+GLNKYGPAVSGL+++ SASAGS SA A  K
Sbjct: 482 TQKLERIADELLDLTKLERYDYSILFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAK 541

Query: 97  EAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPI 156
            AEKT FDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEK PVVLKKGVTK++GNPI
Sbjct: 542 AAEKTAFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPI 601

Query: 157 IEKLKELGATAVLE 169
           +EKLKELGAT VLE
Sbjct: 602 VEKLKELGATVVLE 615

[Close]
BLAST of CmoCh07G006560 vs. TrEMBL
Match: A0A067KAN8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12544 PE=3 SV=1)

HSP 1 Score: 205.7 bits (522), Expect = 4.5e-50
Identity = 124/175 (70.86%), Postives = 138/175 (78.86%), Query Frame = 1 

Query: 1   MPSIASKLPAKALGRLLTIAPRQLLVRSLGT------VSEERTQKLQRIADDLLGLTKIE 60
           M SIA K+ +K L RLL    + +  RSL T      VSE +TQKL+RIAD LL L KIE
Sbjct: 1   MHSIAVKMHSKTLIRLLNFTSKPIS-RSLCTASTTSSVSETQTQKLERIADQLLDLNKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAE-KTVFDIKLEKFDAAAK 120
           RHDYA+LFR KMG +++ PA+SG   SGSA+AGS  A AK AE KT FDIKLEKFDAAAK
Sbjct: 61  RHDYAVLFRHKMGFHRHSPALSGAVLSGSAAAGSGPAAAKPAEEKTAFDIKLEKFDAAAK 120

Query: 121 IKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTK++ NPIIEKLKELGAT VLE
Sbjct: 121 IKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKEEANPIIEKLKELGATVVLE 174

[Close]
BLAST of CmoCh07G006560 vs. TrEMBL
Match: M5XML3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012547mg PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 6.5e-49
Identity = 110/168 (65.48%), Postives = 136/168 (80.95%), Query Frame = 1 

Query: 1   MPSIASKLPAKALGRLLTIAPRQLLVRSLGTVSEERTQKLQRIADDLLGLTKIERHDYAI 60
           M ++ +K+  +++ R +T   R     +  T +E +TQKL+RIAD+LL LTKIERHDY+I
Sbjct: 1   MSNVTTKVLCRSVSRFVTALSRPFSTAT--TANETQTQKLERIADELLNLTKIERHDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLN+YGPA+SG+  + S S GSAS  AK  EKT FDIK+EKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNRYGPAISGIGPTSSES-GSASTDAKAVEKTAFDIKIEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAK+LVEKVPVV+KKG+TK++  PI++KLKELGAT VLE
Sbjct: 121 RTFTDLGLKEAKELVEKVPVVVKKGLTKEEAGPIVDKLKELGATVVLE 165

[Close]
BLAST of CmoCh07G006560 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 155.2 bits (391), Expect = 3.5e-38
Identity = 89/161 (55.28%), Postives = 115/161 (71.43%), Query Frame = 1 

Query: 10  AKALGRLLTIAPRQLLVRSLGTVS--EERTQKLQRIADDLLGLTKIERHDYAILFRLKMG 69
           +++LG L    P     R L  V+  E RT+KL+RIADDLL L +IE +DY++LF  K+G
Sbjct: 10  SRSLGYLHRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIG 69

Query: 70  LNKYGPAVSGLSASGSASAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLG 129
           LN+YG AV+    +GS    SAS   K AEKT FD+KLEKF+AA+KIK+IKE+R FTDLG
Sbjct: 70  LNRYGSAVA---VTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLG 129

Query: 130 LKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           LKEAK LVEK PV++K G+TK++   I+EKLK +GA   LE
Sbjct: 130 LKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167

[Close]
BLAST of CmoCh07G006560 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 110.5 bits (275), Expect = 9.9e-25
Identity = 68/142 (47.89%), Postives = 93/142 (65.49%), Query Frame = 1 

Query: 37  TQKLQRIADDLLGLTKIERHDYAILFRLKMGLNKYGPAVS--------GLSASGSASAGS 96
           T ++ R+ D++  LT +E  +   +   K G+ +  P V+        G+   G     S
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  ASAVAKEA--EKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGV 156
            S V++EA  EKTVF+IKLE F+A+AKIKIIKE+R+FTDLGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of CmoCh07G006560 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 104.8 bits (260), Expect = 5.4e-23
Identity = 61/139 (43.88%), Postives = 90/139 (64.75%), Query Frame = 1 

Query: 36  RTQKLQRIADDLLGLTKIERHDYAILFRLKMGLNKY---GPAVSGLSASGSASAGSASAV 95
           +++ + +I ++L  LT +E  D   + R K+ +++       + G+S  GS ++ SA   
Sbjct: 41  QSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGE 100

Query: 96  AKEAEK---TVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKD 155
            KE +K   T FD+ L+ +DA +KIK+IKEVRT T LGLKEAKDLVEK P +LKKGV+K+
Sbjct: 101 GKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKE 160

Query: 156 QGNPIIEKLKELGATAVLE 169
           +   IIEKLK +GA   +E
Sbjct: 161 EAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of CmoCh07G006560 vs. TAIR10
Match: AT3G06040.1 (AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-23
Identity = 63/133 (47.37%), Postives = 86/133 (64.66%), Query Frame = 1 

Query: 37  TQKLQRIADDLLGLTKIERHDYAILFRLKMGLNKYGPAVS-GLSASGSASAGSASAVAKE 96
           + K+  +A+ +  L+  ER          + L K     S G+ A     AG+   V ++
Sbjct: 57  SSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGN---VEEK 116

Query: 97  AEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPII 156
            EKT FD+KLEKF+A+ KIK+IKEVRTFT LGLKEAK+LVEKVP +LK+GVTK++ N II
Sbjct: 117 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 176

Query: 157 EKLKELGATAVLE 169
            K+K +G  AV+E
Sbjct: 177 AKIKAVGGIAVME 186

[Close]
BLAST of CmoCh07G006560 vs. TAIR10
Match: AT2G03130.1 (AT2G03130.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 85.9 bits (211), Expect = 2.6e-17
Identity = 46/83 (55.42%), Postives = 60/83 (72.29%), Query Frame = 1 

Query: 86  AGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKG 145
           +G  +    +AEKTVF++KLE F+A AKIKIIKEVR    +GLKEA  LV K P VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 146 VTKDQGNPIIEKLKELGATAVLE 169
           ++K++G  ++EKL  LGA AVL+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

[Close]
BLAST of CmoCh07G006560 vs. NCBI nr
Match: gi|449448220|ref|XP_004141864.1| (PREDICTED: 50S ribosomal protein L12, cyanelle [Cucumis sativus])

HSP 1 Score: 279.3 bits (713), Expect = 4.6e-72
Identity = 153/168 (91.07%), Postives = 160/168 (95.24%), Query Frame = 1 

Query: 1   MPSIASKLPAKALGRLLTIAPRQLLVRSLGTVSEERTQKLQRIADDLLGLTKIERHDYAI 60
           MPSIASKLPAK+L RLLT+APR LLVRSL TV+EERTQKL+RIAD+LL LTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSA GSA+AGSA+A  KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CmoCh07G006560 vs. NCBI nr
Match: gi|659079707|ref|XP_008440399.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo])

HSP 1 Score: 275.0 bits (702), Expect = 8.6e-71
Identity = 152/168 (90.48%), Postives = 158/168 (94.05%), Query Frame = 1 

Query: 1   MPSIASKLPAKALGRLLTIAPRQLLVRSLGTVSEERTQKLQRIADDLLGLTKIERHDYAI 60
           MPSIASKLPAK+L RLLTIAPR LLVRSL TV+EERTQKL+RIAD+LL L KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSASGSASAGSASAVAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF  KMGLNKYGPAVSGLSA GSA+AGSA+A  KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of CmoCh07G006560 vs. NCBI nr
Match: gi|225468320|ref|XP_002271482.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 212.6 bits (540), Expect = 5.2e-52
Identity = 123/170 (72.35%), Postives = 140/170 (82.35%), Query Frame = 1 

Query: 1   MPSIASKLPAKALGRLLTIAPRQLLVRSLGTVSEERTQKLQRIADDLLGLTKIERHDYAI 60
           M SI +++P K L R L  A  + L  +  T     TQKL+RIAD+LL LTK+ER+DY+I
Sbjct: 1   MHSITTRIPYKTLVRPLFFAQSRNLCSASAT-----TQKLERIADELLDLTKLERYDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSASGSASAGSASAVA--KEAEKTVFDIKLEKFDAAAKIKIIK 120
           LFRLK+GLNKYGPAVSGL+++ SASAGS SA A  K AEKT FDIKLEKFDAAAKIKIIK
Sbjct: 61  LFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIK 120

Query: 121 EVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           EVRTFTDLGLKEAKDLVEK PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 121 EVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 165

[Close]
BLAST of CmoCh07G006560 vs. NCBI nr
Match: gi|1009145413|ref|XP_015890323.1| (PREDICTED: 50S ribosomal protein L7/L12-like [Ziziphus jujuba])

HSP 1 Score: 211.8 bits (538), Expect = 8.9e-52
Identity = 124/176 (70.45%), Postives = 144/176 (81.82%), Query Frame = 1 

Query: 1   MPSIASKLPAKALGRLL---TIAPRQLLVRSL---GTVSEERTQKLQRIADDLLGLTKIE 60
           M S+ +K+P+++L RL    +  PR  L R+L      +E RTQKL+RIAD+LL LTKIE
Sbjct: 1   MSSLTTKIPSRSLVRLFAPTSATPRPPLSRTLCAPTASTETRTQKLERIADELLDLTKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSASGSASAGSASAV--AKEAEKTVFDIKLEKFDAAA 120
           R+DY ILFRLKMGLN+YGPAVS  S++GSASAGS SA   AK AEKT FDIKLEKFDAAA
Sbjct: 61  RYDYTILFRLKMGLNRYGPAVSAPSSTGSASAGSGSASGDAKVAEKTAFDIKLEKFDAAA 120

Query: 121 KIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           KIKIIKEVRTFTDLGLKEAK+LVEKVPVVLKKG+TK++  PI+EKLKELGAT VLE
Sbjct: 121 KIKIIKEVRTFTDLGLKEAKELVEKVPVVLKKGLTKEEAGPIVEKLKELGATVVLE 176

[Close]
BLAST of CmoCh07G006560 vs. NCBI nr
Match: gi|147858132|emb|CAN83934.1| (hypothetical protein VITISV_035768 [Vitis vinifera])

HSP 1 Score: 206.8 bits (525), Expect = 2.9e-50
Identity = 112/134 (83.58%), Postives = 124/134 (92.54%), Query Frame = 1 

Query: 37  TQKLQRIADDLLGLTKIERHDYAILFRLKMGLNKYGPAVSGLSASGSASAGSASAVA--K 96
           TQKL+RIAD+LL LTK+ER+DY+ILFRLK+GLNKYGPAVSGL+++ SASAGS SA A  K
Sbjct: 482 TQKLERIADELLDLTKLERYDYSILFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAK 541

Query: 97  EAEKTVFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPI 156
            AEKT FDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEK PVVLKKGVTK++GNPI
Sbjct: 542 AAEKTAFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPI 601

Query: 157 IEKLKELGATAVLE 169
           +EKLKELGAT VLE
Sbjct: 602 VEKLKELGATVVLE 615

The following BLAST results are available for this feature:
BLAST of CmoCh07G006560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL7_LIBAF3.0e-1542.1950S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1[more]
RL7_RHIL31.9e-1443.6550S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. viciae (strain 3841)... [more]
RL7_RHIE67.4e-1445.6750S ribosomal protein L7/L12 OS=Rhizobium etli (strain CIAT 652) GN=rplL PE=3 SV... [more]
RL7_SYNJB9.7e-1438.0650S ribosomal protein L7/L12 OS=Synechococcus sp. (strain JA-2-3B'a(2-13)) GN=rp... [more]
RL7_RHILW1.3e-1342.8650S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. trifolii (strain WSM... [more]
BLAST of CmoCh07G006560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLI9_CUCSA3.2e-7291.07Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495700 PE=4 SV=1[more]
F6HWW7_VITVI3.7e-5272.35Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1232g00020 PE=3 SV=... [more]
A5C502_VITVI2.0e-5083.58Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035768 PE=3 SV=1[more]
A0A067KAN8_JATCU4.5e-5070.86Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12544 PE=3 SV=1[more]
M5XML3_PRUPE6.5e-4965.48Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012547mg PE=4 SV=1[more]
BLAST of CmoCh07G006560 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37660.13.5e-3855.28 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT1G70190.19.9e-2547.89 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ... [more]
AT4G36420.15.4e-2343.88 Ribosomal protein L12 family protein[more]
AT3G06040.17.1e-2347.37 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT2G03130.12.6e-1755.42 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
BLAST of CmoCh07G006560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448220|ref|XP_004141864.1|4.6e-7291.07PREDICTED: 50S ribosomal protein L12, cyanelle [Cucumis sativus][more]
gi|659079707|ref|XP_008440399.1|8.6e-7190.48PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo][more]
gi|225468320|ref|XP_002271482.1|5.2e-5272.35PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera][more]
gi|1009145413|ref|XP_015890323.1|8.9e-5270.45PREDICTED: 50S ribosomal protein L7/L12-like [Ziziphus jujuba][more]
gi|147858132|emb|CAN83934.1|2.9e-5083.58hypothetical protein VITISV_035768 [Vitis vinifera][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013823Ribosomal_L7/L12_C
IPR014719Ribosomal_L7/12_C/ClpS-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0022900 electron transport chain
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006839 mitochondrial transport
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0022857 transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh07G006560.1CmoCh07G006560.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 102..162
score: 1.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 101..167
score: 1.1
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 95..167
score: 7.0
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 97..167
score: 4.19
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 35..168
score: 1.2
NoneNo IPR availablePANTHERPTHR24089:SF375SUBFAMILY NOT NAMEDcoord: 35..168
score: 1.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh07G006560CmaCh03G009120Cucurbita maxima (Rimu)cmacmoB667
CmoCh07G006560Cla014033Watermelon (97103) v1cmowmB816
CmoCh07G006560Csa6G495700Cucumber (Chinese Long) v2cmocuB865
CmoCh07G006560MELO3C007639Melon (DHL92) v3.5.1cmomeB793
CmoCh07G006560ClCG01G017620Watermelon (Charleston Gray)cmowcgB755
CmoCh07G006560CSPI06G28950Wild cucumber (PI 183967)cmocpiB873
CmoCh07G006560Lsi01G008900Bottle gourd (USVL1VR-Ls)cmolsiB774
CmoCh07G006560Cp4.1LG19g10700Cucurbita pepo (Zucchini)cmocpeB817
CmoCh07G006560MELO3C007639.2Melon (DHL92) v3.6.1cmomedB896
CmoCh07G006560CsaV3_6G044160Cucumber (Chinese Long) v3cmocucB1019
CmoCh07G006560Cla97C01G016790Watermelon (97103) v2cmowmbB849
CmoCh07G006560Bhi03G000797Wax gourdcmowgoB1063
CmoCh07G006560CsGy6G028420Cucumber (Gy14) v2cgybcmoB843
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh07G006560Watermelon (97103) v2cmowmbB876
CmoCh07G006560Wax gourdcmowgoB1044
CmoCh07G006560Cucurbita moschata (Rifu)cmocmoB037
CmoCh07G006560Cucurbita moschata (Rifu)cmocmoB164
CmoCh07G006560Cucurbita moschata (Rifu)cmocmoB296
CmoCh07G006560Cucurbita moschata (Rifu)cmocmoB376
CmoCh07G006560Cucurbita moschata (Rifu)cmocmoB455
CmoCh07G006560Cucurbita moschata (Rifu)cmocmoB477
CmoCh07G006560Cucumber (Gy14) v1cgycmoB0233
CmoCh07G006560Cucumber (Gy14) v1cgycmoB0970
CmoCh07G006560Cucumber (Gy14) v1cgycmoB1095
CmoCh07G006560Cucurbita maxima (Rimu)cmacmoB065
CmoCh07G006560Cucurbita maxima (Rimu)cmacmoB204
CmoCh07G006560Cucurbita maxima (Rimu)cmacmoB875
CmoCh07G006560Wild cucumber (PI 183967)cmocpiB847
CmoCh07G006560Wild cucumber (PI 183967)cmocpiB864
CmoCh07G006560Cucumber (Chinese Long) v2cmocuB837
CmoCh07G006560Cucumber (Chinese Long) v2cmocuB856
CmoCh07G006560Melon (DHL92) v3.5.1cmomeB773
CmoCh07G006560Melon (DHL92) v3.5.1cmomeB781
CmoCh07G006560Watermelon (Charleston Gray)cmowcgB777
CmoCh07G006560Watermelon (97103) v1cmowmB807
CmoCh07G006560Cucurbita pepo (Zucchini)cmocpeB806
CmoCh07G006560Cucurbita pepo (Zucchini)cmocpeB815
CmoCh07G006560Cucurbita pepo (Zucchini)cmocpeB827
CmoCh07G006560Bottle gourd (USVL1VR-Ls)cmolsiB789
CmoCh07G006560Bottle gourd (USVL1VR-Ls)cmolsiB795
CmoCh07G006560Cucumber (Gy14) v2cgybcmoB249
CmoCh07G006560Cucumber (Gy14) v2cgybcmoB543
CmoCh07G006560Melon (DHL92) v3.6.1cmomedB878
CmoCh07G006560Melon (DHL92) v3.6.1cmomedB885
CmoCh07G006560Silver-seed gourdcarcmoB0005
CmoCh07G006560Silver-seed gourdcarcmoB0516
CmoCh07G006560Silver-seed gourdcarcmoB0554
CmoCh07G006560Silver-seed gourdcarcmoB0618
CmoCh07G006560Silver-seed gourdcarcmoB1048
CmoCh07G006560Cucumber (Chinese Long) v3cmocucB0990
CmoCh07G006560Cucumber (Chinese Long) v3cmocucB1006