ClCG01G017620 (gene) Watermelon (Charleston Gray)

Overview
NameClCG01G017620
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
Description50S ribosomal protein L7/L12
LocationCG_Chr01 : 32137995 .. 32138501 (+)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATCAGTTGTCTCCAAACTTCCGGCCAAAGCTTTAGTGAGACTTCTCACTGTCGCTCCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCACTAAAATCGAACGACACGACTATGCCATCCTCTTCCGGTTGAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCTCCGCCGAAGCAAAAGAGGCTGAGAAAACCGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGAGTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCGGTGGTGCTCAAGAAGGGAGTAACGAAAGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCTACTGCGGTATTGGAATGA

mRNA sequence

ATGCCATCAGTTGTCTCCAAACTTCCGGCCAAAGCTTTAGTGAGACTTCTCACTGTCGCTCCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCACTAAAATCGAACGACACGACTATGCCATCCTCTTCCGGTTGAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCTCCGCCGAAGCAAAAGAGGCTGAGAAAACCGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGAGTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCGGTGGTGCTCAAGAAGGGAGTAACGAAAGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCTACTGCGGTATTGGAATGA

Coding sequence (CDS)

ATGCCATCAGTTGTCTCCAAACTTCCGGCCAAAGCTTTAGTGAGACTTCTCACTGTCGCTCCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGCTCCTCGACCTCACTAAAATCGAACGACACGACTATGCCATCCTCTTCCGGTTGAAAATGGGTTTAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCTCCGCCGAAGCAAAAGAGGCTGAGAAAACCGTTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGAGTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCGGTGGTGCTCAAGAAGGGAGTAACGAAAGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCTACTGCGGTATTGGAATGA

Protein sequence

MPSVVSKLPAKALVRLLTVAPRPLLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Homology
[Close]
BLAST of ClCG01G017620 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 92.0 bits (227), Expect = 6.5e-18
Identity = 54/128 (42.19%), Postives = 72/128 (56.25%), Query Frame = 1 

Query: 40  LERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKT 99
           +E I ++L  LT ++  + +     + G++   P     SA G +AA  A       EKT
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAAVA-------EKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA  KI +IKEVR  TELGLKEAKD VE  P  LK GV+KD+   + +KL+
Sbjct: 64  EFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 123

Query: 160 ELGATAVL 168
             GAT +L
Sbjct: 124 AAGATIIL 124

[Close]
BLAST of ClCG01G017620 vs. Swiss-Prot
Match: RL7_PROM4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplL PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-17
Identity = 50/132 (37.88%), Postives = 74/132 (56.06%), Query Frame = 1 

Query: 37  TQKLERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEA 96
           ++K + I D L  L+ +E  +         G++    A   ++APG+    SA+ EA E 
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGGGASAAGEAAE- 61

Query: 97  EKTVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIE 156
           EKT FD+ LE FDAAAKIK++KEVR  T LGL EAK +VE  P  +K+G +K+    + +
Sbjct: 62  EKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKK 121

Query: 157 KLKELGATAVLE 169
            ++ +G    L+
Sbjct: 122 AIEAVGGKVTLK 132

[Close]
BLAST of ClCG01G017620 vs. Swiss-Prot
Match: RL7_THEM4 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429) GN=rplL PE=3 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 5.5e-17
Identity = 59/134 (44.03%), Postives = 77/134 (57.46%), Query Frame = 1 

Query: 38  QKLERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAE 97
           +KLE+I +E+  LT  E  +   +   K G++   P V  +   G+AA G A+AE    E
Sbjct: 2   EKLEQIVNEIEQLTVAELAELVKMLEDKFGVSASAP-VMAMPVAGAAAGGGAAAE----E 61

Query: 98  KTVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKV---PVVLKKGVTKDQGNPI 157
           KT FD+ L+ F  A KI +IK VR  T LGLKEAKDLVEK      V+K+GV KD+   I
Sbjct: 62  KTEFDVVLKSF-GAKKINVIKVVREITGLGLKEAKDLVEKAGTPDAVIKQGVNKDEAEEI 121

Query: 158 IEKLKELGATAVLE 169
            +KL+E GA   L+
Sbjct: 122 KKKLEEAGAEVELK 129

[Close]
BLAST of ClCG01G017620 vs. Swiss-Prot
Match: RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 1.2e-16
Identity = 52/128 (40.62%), Postives = 76/128 (59.38%), Query Frame = 1 

Query: 40  LERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKT 99
           +E I ++L  LT I+  + +     + G++         SAP +A A +   +   AEKT
Sbjct: 4   IESIVEKLSSLTLIQAAELSKRLEEEWGVSA--------SAPVAAVAPAVXXDVAVAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA +KI +IKEVR+ T+LGLKEAK+LVE +   L+ GV+KD+ N + +KL+
Sbjct: 64  EFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKKKLE 123

Query: 160 ELGATAVL 168
             GAT  L
Sbjct: 124 AAGATISL 123

[Close]
BLAST of ClCG01G017620 vs. Swiss-Prot
Match: RL7_SYNPX (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 2.1e-16
Identity = 49/130 (37.69%), Postives = 74/130 (56.92%), Query Frame = 1 

Query: 39  KLERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEK 98
           K + I + L  L+ +E  +         G++    A   ++APG+AA G     A+E  K
Sbjct: 4   KTDEILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGGGGGEVAEE--K 63

Query: 99  TVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKL 158
           T FD+ LE FDAAAKIK++K VR  T LGL +AK LVE  P  +K+G++KD+   + +++
Sbjct: 64  TEFDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGISKDEAEALKKEI 123

Query: 159 KELGATAVLE 169
           +E+G    L+
Sbjct: 124 EEVGGKVTLK 131

[Close]
BLAST of ClCG01G017620 vs. TrEMBL
Match: A0A0A0KLI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495700 PE=4 SV=1)

HSP 1 Score: 305.8 bits (782), Expect = 3.2e-80
Identity = 160/168 (95.24%), Postives = 165/168 (98.21%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLLTVAPRPLLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAI 60
           MPS+ SKLPAK+LVRLLTVAPRPLLVRSLSTV+EERTQKLERIADELLDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of ClCG01G017620 vs. TrEMBL
Match: F6HWW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1232g00020 PE=3 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 1.4e-56
Identity = 124/170 (72.94%), Postives = 142/170 (83.53%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLLTVAPRPLLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAI 60
           M S+ +++P K LVR L  A    L  + +T     TQKLERIADELLDLTK+ER+DY+I
Sbjct: 1   MHSITTRIPYKTLVRPLFFAQSRNLCSASAT-----TQKLERIADELLDLTKLERYDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASA--EAKEAEKTVFDIKLEKFDAAAKIKIIK 120
           LFRLK+GLNKYGPAVSGL++  SA+AGS SA  +AK AEKT FDIKLEKFDAAAKIKIIK
Sbjct: 61  LFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIK 120

Query: 121 EVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           EVRTFT+LGLKEAKDLVEK PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 121 EVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 165

[Close]
BLAST of ClCG01G017620 vs. TrEMBL
Match: A0A067KAN8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12544 PE=3 SV=1)

HSP 1 Score: 222.6 bits (566), Expect = 3.5e-55
Identity = 124/175 (70.86%), Postives = 141/175 (80.57%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLLTVAPRPLLVRSL------STVSEERTQKLERIADELLDLTKIE 60
           M S+  K+ +K L+RLL    +P+  RSL      S+VSE +TQKLERIAD+LLDL KIE
Sbjct: 1   MHSIAVKMHSKTLIRLLNFTSKPIS-RSLCTASTTSSVSETQTQKLERIADQLLDLNKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAE-KTVFDIKLEKFDAAAK 120
           RHDYA+LFR KMG +++ PA+SG    GSAAAGS  A AK AE KT FDIKLEKFDAAAK
Sbjct: 61  RHDYAVLFRHKMGFHRHSPALSGAVLSGSAAAGSGPAAAKPAEEKTAFDIKLEKFDAAAK 120

Query: 121 IKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IKIIKEVRTFT+LGLKEAKDLVEKVPVVLKKGVTK++ NPIIEKLKELGAT VLE
Sbjct: 121 IKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKEEANPIIEKLKELGATVVLE 174

[Close]
BLAST of ClCG01G017620 vs. TrEMBL
Match: A0A061DH66_THECC (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein OS=Theobroma cacao GN=TCM_000806 PE=3 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 1.0e-54
Identity = 119/172 (69.19%), Postives = 142/172 (82.56%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLLTVAPR--PLLVRSLSTVSEERTQKLERIADELLDLTKIERHDY 60
           M SV +K+P K+L+RL   +P   P+   S +  +E RTQKLERIADELLDLTK+ER+DY
Sbjct: 1   MSSVTTKIPTKSLLRLFISSPPKPPISHFSSTATAEARTQKLERIADELLDLTKLERYDY 60

Query: 61  AILFRLKMGLNKYGPAVSGLS--APGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKI 120
           +ILFRLK+GLN+YGPAVSG S  AP +  +GS +AE+K AEKT FDIKLEKFDAAAKIKI
Sbjct: 61  SILFRLKLGLNRYGPAVSGASSAAPSAPGSGSGAAESKAAEKTAFDIKLEKFDAAAKIKI 120

Query: 121 IKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IKEVR FTELGLKEAKDLVEKVPVV+KKGV K++ + II+KL+ELGAT VLE
Sbjct: 121 IKEVRAFTELGLKEAKDLVEKVPVVVKKGVGKEEADGIIKKLQELGATVVLE 172

[Close]
BLAST of ClCG01G017620 vs. TrEMBL
Match: A0A0D2T620_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G108200 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-54
Identity = 118/176 (67.05%), Postives = 146/176 (82.95%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLL-TVAPRPLLVRSLSTVS-----EERTQKLERIADELLDLTKIE 60
           M S +SK+P  +L++LL + +P+P +   +ST +     E RTQKLERIADELLDLTK+E
Sbjct: 1   MASTISKIPTHSLIKLLVSSSPKPPVSCFISTATATATAENRTQKLERIADELLDLTKLE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSAPGSAA--AGSASAEAKEAEKTVFDIKLEKFDAAA 120
           R+DY+ILFRLK+GLN+YGPAVSG+S+  ++    GS++AE K AEKT FDIKLEKFDAAA
Sbjct: 61  RYDYSILFRLKLGLNRYGPAVSGVSSAAASGPGTGSSAAETKTAEKTAFDIKLEKFDAAA 120

Query: 121 KIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           KIKIIKEVRTFTELGLKEAKD+VEKVPVV+KKGVTK++   II+KL+ELGAT VLE
Sbjct: 121 KIKIIKEVRTFTELGLKEAKDMVEKVPVVVKKGVTKEEAEAIIKKLQELGATVVLE 176

[Close]
BLAST of ClCG01G017620 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 164.1 bits (414), Expect = 7.5e-41
Identity = 90/170 (52.94%), Postives = 117/170 (68.82%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLLTVAPRPLLVRSLSTVS--EERTQKLERIADELLDLTKIERHDY 60
           M + +S + +++L  L    P     R L  V+  E RT+KLERIAD+LL L +IE +DY
Sbjct: 1   MRAPISGIFSRSLGYLHRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDY 60

Query: 61  AILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIK 120
           ++LF  K+GLN+YG AV+     GS    SAS E K AEKT FD+KLEKF+AA+KIK+IK
Sbjct: 61  SLLFSHKIGLNRYGSAVA---VTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIK 120

Query: 121 EVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           E+R FT+LGLKEAK LVEK PV++K G+TK++   I+EKLK +GA   LE
Sbjct: 121 EIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167

[Close]
BLAST of ClCG01G017620 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 122.1 bits (305), Expect = 3.3e-28
Identity = 65/139 (46.76%), Postives = 91/139 (65.47%), Query Frame = 1 

Query: 36  RTQKLERIADELLDLTKIERHDYAILFRLKMGLNKY---GPAVSGLSAPGSAAAGSASAE 95
           +++ + +I +EL +LT +E  D   + R K+ +++       + G+S PGS A+ SA  E
Sbjct: 41  QSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGE 100

Query: 96  AKEAEK---TVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKD 155
            KE +K   T FD+ L+ +DA +KIK+IKEVRT T LGLKEAKDLVEK P +LKKGV+K+
Sbjct: 101 GKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKE 160

Query: 156 QGNPIIEKLKELGATAVLE 169
           +   IIEKLK +GA   +E
Sbjct: 161 EAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of ClCG01G017620 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 116.7 bits (291), Expect = 1.4e-26
Identity = 65/142 (45.77%), Postives = 89/142 (62.68%), Query Frame = 1 

Query: 37  TQKLERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVS----------GLSAPGSAAA 96
           T ++ R+ DE+  LT +E  +   +   K G+ +  P V+          G+   G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGV 156
            S  +E  + EKTVF+IKLE F+A+AKIKIIKE+R+FT+LGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of ClCG01G017620 vs. TAIR10
Match: AT3G06040.1 (AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 109.4 bits (272), Expect = 2.2e-24
Identity = 62/133 (46.62%), Postives = 83/133 (62.41%), Query Frame = 1 

Query: 37  TQKLERIADELLDLTKIERHDYAILFRLKMGLNKYGPAVS-GLSAPGSAAAGSASAEAKE 96
           + K+  +A+ +  L+  ER          + L K     S G+ A     AG+     ++
Sbjct: 57  SSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGNVE---EK 116

Query: 97  AEKTVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPII 156
            EKT FD+KLEKF+A+ KIK+IKEVRTFT LGLKEAK+LVEKVP +LK+GVTK++ N II
Sbjct: 117 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 176

Query: 157 EKLKELGATAVLE 169
            K+K +G  AV+E
Sbjct: 177 AKIKAVGGIAVME 186

[Close]
BLAST of ClCG01G017620 vs. TAIR10
Match: AT2G03130.1 (AT2G03130.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 94.0 bits (232), Expect = 9.6e-20
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1 

Query: 86  AGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKG 145
           +G  + E  +AEKTVF++KLE F+A AKIKIIKEVR    +GLKEA  LV K P VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 146 VTKDQGNPIIEKLKELGATAVLE 169
           ++K++G  ++EKL  LGA AVL+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

[Close]
BLAST of ClCG01G017620 vs. NCBI nr
Match: gi|449448220|ref|XP_004141864.1| (PREDICTED: 50S ribosomal protein L12, cyanelle [Cucumis sativus])

HSP 1 Score: 305.8 bits (782), Expect = 4.6e-80
Identity = 160/168 (95.24%), Postives = 165/168 (98.21%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLLTVAPRPLLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAI 60
           MPS+ SKLPAK+LVRLLTVAPRPLLVRSLSTV+EERTQKLERIADELLDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of ClCG01G017620 vs. NCBI nr
Match: gi|659079707|ref|XP_008440399.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo])

HSP 1 Score: 300.8 bits (769), Expect = 1.5e-78
Identity = 157/168 (93.45%), Postives = 163/168 (97.02%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLLTVAPRPLLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAI 60
           MPS+ SKLPAK+LVRLLT+APRPLLVRSLSTV+EERTQKLERIADELLDL KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF  KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT+LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of ClCG01G017620 vs. NCBI nr
Match: gi|1009145413|ref|XP_015890323.1| (PREDICTED: 50S ribosomal protein L7/L12-like [Ziziphus jujuba])

HSP 1 Score: 232.3 bits (591), Expect = 6.4e-58
Identity = 127/176 (72.16%), Postives = 148/176 (84.09%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLL---TVAPRPLLVRSL---STVSEERTQKLERIADELLDLTKIE 60
           M S+ +K+P+++LVRL    +  PRP L R+L   +  +E RTQKLERIADELLDLTKIE
Sbjct: 1   MSSLTTKIPSRSLVRLFAPTSATPRPPLSRTLCAPTASTETRTQKLERIADELLDLTKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASA--EAKEAEKTVFDIKLEKFDAAA 120
           R+DY ILFRLKMGLN+YGPAVS  S+ GSA+AGS SA  +AK AEKT FDIKLEKFDAAA
Sbjct: 61  RYDYTILFRLKMGLNRYGPAVSAPSSTGSASAGSGSASGDAKVAEKTAFDIKLEKFDAAA 120

Query: 121 KIKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           KIKIIKEVRTFT+LGLKEAK+LVEKVPVVLKKG+TK++  PI+EKLKELGAT VLE
Sbjct: 121 KIKIIKEVRTFTDLGLKEAKELVEKVPVVLKKGLTKEEAGPIVEKLKELGATVVLE 176

[Close]
BLAST of ClCG01G017620 vs. NCBI nr
Match: gi|225468320|ref|XP_002271482.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 227.3 bits (578), Expect = 2.1e-56
Identity = 124/170 (72.94%), Postives = 142/170 (83.53%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLLTVAPRPLLVRSLSTVSEERTQKLERIADELLDLTKIERHDYAI 60
           M S+ +++P K LVR L  A    L  + +T     TQKLERIADELLDLTK+ER+DY+I
Sbjct: 1   MHSITTRIPYKTLVRPLFFAQSRNLCSASAT-----TQKLERIADELLDLTKLERYDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASA--EAKEAEKTVFDIKLEKFDAAAKIKIIK 120
           LFRLK+GLNKYGPAVSGL++  SA+AGS SA  +AK AEKT FDIKLEKFDAAAKIKIIK
Sbjct: 61  LFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIK 120

Query: 121 EVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           EVRTFT+LGLKEAKDLVEK PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 121 EVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 165

[Close]
BLAST of ClCG01G017620 vs. NCBI nr
Match: gi|802645979|ref|XP_012079421.1| (PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas])

HSP 1 Score: 222.6 bits (566), Expect = 5.1e-55
Identity = 124/175 (70.86%), Postives = 141/175 (80.57%), Query Frame = 1 

Query: 1   MPSVVSKLPAKALVRLLTVAPRPLLVRSL------STVSEERTQKLERIADELLDLTKIE 60
           M S+  K+ +K L+RLL    +P+  RSL      S+VSE +TQKLERIAD+LLDL KIE
Sbjct: 1   MHSIAVKMHSKTLIRLLNFTSKPIS-RSLCTASTTSSVSETQTQKLERIADQLLDLNKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAE-KTVFDIKLEKFDAAAK 120
           RHDYA+LFR KMG +++ PA+SG    GSAAAGS  A AK AE KT FDIKLEKFDAAAK
Sbjct: 61  RHDYAVLFRHKMGFHRHSPALSGAVLSGSAAAGSGPAAAKPAEEKTAFDIKLEKFDAAAK 120

Query: 121 IKIIKEVRTFTELGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IKIIKEVRTFT+LGLKEAKDLVEKVPVVLKKGVTK++ NPIIEKLKELGAT VLE
Sbjct: 121 IKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKEEANPIIEKLKELGATVVLE 174

The following BLAST results are available for this feature:
BLAST of ClCG01G017620 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL7_LIBAF6.5e-1842.1950S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1[more]
RL7_PROM45.5e-1737.8850S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpl... [more]
RL7_THEM45.5e-1744.0350S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CI... [more]
RL7_LIBAC1.2e-1640.6350S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL P... [more]
RL7_SYNPX2.1e-1637.6950S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 S... [more]
BLAST of ClCG01G017620 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLI9_CUCSA3.2e-8095.24Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495700 PE=4 SV=1[more]
F6HWW7_VITVI1.4e-5672.94Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1232g00020 PE=3 SV=... [more]
A0A067KAN8_JATCU3.5e-5570.86Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12544 PE=3 SV=1[more]
A0A061DH66_THECC1.0e-5469.19Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
A0A0D2T620_GOSRA1.8e-5467.05Uncharacterized protein OS=Gossypium raimondii GN=B456_011G108200 PE=3 SV=1[more]
BLAST of ClCG01G017620 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37660.17.5e-4152.94 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT4G36420.13.3e-2846.76 Ribosomal protein L12 family protein[more]
AT1G70190.11.4e-2645.77 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ... [more]
AT3G06040.12.2e-2446.62 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT2G03130.19.6e-2056.63 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
BLAST of ClCG01G017620 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448220|ref|XP_004141864.1|4.6e-8095.24PREDICTED: 50S ribosomal protein L12, cyanelle [Cucumis sativus][more]
gi|659079707|ref|XP_008440399.1|1.5e-7893.45PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo][more]
gi|1009145413|ref|XP_015890323.1|6.4e-5872.16PREDICTED: 50S ribosomal protein L7/L12-like [Ziziphus jujuba][more]
gi|225468320|ref|XP_002271482.1|2.1e-5672.94PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera][more]
gi|802645979|ref|XP_012079421.1|5.1e-5570.86PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR013823Ribosomal_L7/L12_C
IPR014719Ribosomal_L7/12_C/ClpS-like
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0022900 electron transport chain
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006508 proteolysis
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006839 mitochondrial transport
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005762 mitochondrial large ribosomal subunit
cellular_component GO:0005622 intracellular
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008233 peptidase activity
molecular_function GO:0022857 transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG01G017620.1ClCG01G017620.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 102..162
score: 1.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 101..167
score: 1.4
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 95..167
score: 1.7
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 97..167
score: 7.5
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 35..168
score: 4.4
NoneNo IPR availablePANTHERPTHR24089:SF375SUBFAMILY NOT NAMEDcoord: 35..168
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG01G017620Csa6G495700Cucumber (Chinese Long) v2cuwcgB432
ClCG01G017620MELO3C007639Melon (DHL92) v3.5.1mewcgB514
ClCG01G017620Cla014033Watermelon (97103) v1wcgwmB141
ClCG01G017620Cla97C01G016790Watermelon (97103) v2wcgwmbB089
ClCG01G017620Bhi03G000797Wax gourdwcgwgoB223
ClCG01G017620CSPI06G28950Wild cucumber (PI 183967)cpiwcgB453
ClCG01G017620CmaCh03G009120Cucurbita maxima (Rimu)cmawcgB579
ClCG01G017620CmoCh07G006560Cucurbita moschata (Rifu)cmowcgB755
ClCG01G017620Lsi01G008900Bottle gourd (USVL1VR-Ls)lsiwcgB127
ClCG01G017620Cp4.1LG19g10700Cucurbita pepo (Zucchini)cpewcgB425
ClCG01G017620CsGy6G028420Cucumber (Gy14) v2cgybwcgB399
ClCG01G017620MELO3C007639.2Melon (DHL92) v3.6.1medwcgB509
ClCG01G017620CsaV3_6G044160Cucumber (Chinese Long) v3cucwcgB455
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG01G017620Cucumber (Gy14) v2cgybwcgB111
ClCG01G017620Cucumber (Gy14) v2cgybwcgB264
ClCG01G017620Melon (DHL92) v3.6.1medwcgB268
ClCG01G017620Melon (DHL92) v3.6.1medwcgB463
ClCG01G017620Silver-seed gourdcarwcgB0002
ClCG01G017620Silver-seed gourdcarwcgB0397
ClCG01G017620Silver-seed gourdcarwcgB0444
ClCG01G017620Silver-seed gourdcarwcgB0744
ClCG01G017620Cucumber (Chinese Long) v3cucwcgB128
ClCG01G017620Cucumber (Chinese Long) v3cucwcgB296
ClCG01G017620Watermelon (97103) v2wcgwmbB121
ClCG01G017620Wax gourdwcgwgoB217
ClCG01G017620Watermelon (Charleston Gray)wcgwcgB112
ClCG01G017620Cucumber (Gy14) v1cgywcgB134
ClCG01G017620Cucumber (Gy14) v1cgywcgB597
ClCG01G017620Cucumber (Gy14) v1cgywcgB670
ClCG01G017620Cucurbita maxima (Rimu)cmawcgB153
ClCG01G017620Cucurbita maxima (Rimu)cmawcgB754
ClCG01G017620Cucurbita moschata (Rifu)cmowcgB013
ClCG01G017620Cucurbita moschata (Rifu)cmowcgB139
ClCG01G017620Cucurbita moschata (Rifu)cmowcgB575
ClCG01G017620Wild cucumber (PI 183967)cpiwcgB121
ClCG01G017620Wild cucumber (PI 183967)cpiwcgB296
ClCG01G017620Cucumber (Chinese Long) v2cuwcgB114
ClCG01G017620Cucumber (Chinese Long) v2cuwcgB285
ClCG01G017620Melon (DHL92) v3.5.1mewcgB278
ClCG01G017620Melon (DHL92) v3.5.1mewcgB471
ClCG01G017620Watermelon (97103) v1wcgwmB120
ClCG01G017620Cucurbita pepo (Zucchini)cpewcgB061
ClCG01G017620Cucurbita pepo (Zucchini)cpewcgB730
ClCG01G017620Bottle gourd (USVL1VR-Ls)lsiwcgB273
ClCG01G017620Bottle gourd (USVL1VR-Ls)lsiwcgB425