Lsi01G008900 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi01G008900
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description50S ribosomal protein L7/L12
Locationchr01 : 7174342 .. 7174848 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCATCAATTACCTCCAAACTTCCGGCCAAAGCTTTAGTGAGGCTTCTCACTATCGCTCCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGACGAGCTCCTCGACCTCACTAAACTCGAACGATACGATTATGGCATCCTCTTCCGGTTGAAAATGGGTATAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCACCGGATCTGCCTCCGCCGAAGCAAAAGAGGCTGAGAAAACCATTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAAGATCAGGGAAACCCAATTATTGAAAAGCTCAAGGAATTGGGAGCTACTGCGGTACTGGAATGA

mRNA sequence

ATGCCATCAATTACCTCCAAACTTCCGGCCAAAGCTTTAGTGAGGCTTCTCACTATCGCTCCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGACGAGCTCCTCGACCTCACTAAACTCGAACGATACGATTATGGCATCCTCTTCCGGTTGAAAATGGGTATAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCACCGGATCTGCCTCCGCCGAAGCAAAAGAGGCTGAGAAAACCATTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAAGATCAGGGAAACCCAATTATTGAAAAGCTCAAGGAATTGGGAGCTACTGCGGTACTGGAATGA

Coding sequence (CDS)

ATGCCATCAATTACCTCCAAACTTCCGGCCAAAGCTTTAGTGAGGCTTCTCACTATCGCTCCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGACGAGCTCCTCGACCTCACTAAACTCGAACGATACGATTATGGCATCCTCTTCCGGTTGAAAATGGGTATAAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCACCGGATCTGCCTCCGCCGAAGCAAAAGAGGCTGAGAAAACCATTTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACTGATTTGGGTCTGAAAGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAAGATCAGGGAAACCCAATTATTGAAAAGCTCAAGGAATTGGGAGCTACTGCGGTACTGGAATGA

Protein sequence

MPSITSKLPAKALVRLLTIAPRPLLVRSLSTVSEERTQKLERIADELLDLTKLERYDYGILFRLKMGINKYGPAVSGLSAPGSAATGSASAEAKEAEKTIFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Homology
[Close]
BLAST of Lsi01G008900 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 6.1e-16
Identity = 54/128 (42.19%), Postives = 73/128 (57.03%), Query Frame = 1 

Query: 40  LERIADELLDLTKLERYDYGILFRLKMGINKYGPAVSGLSAPGSAATGSASAEAKEAEKT 99
           +E I ++L  LT L+  +       + G++   P     SA G +A       A  AEKT
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESA-------AAVAEKT 63

Query: 100 IFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA  KI +IKEVR  T+LGLKEAKD VE  P  LK GV+KD+   + +KL+
Sbjct: 64  EFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 123

Query: 160 ELGATAVL 168
             GAT +L
Sbjct: 124 AAGATIIL 124

[Close]
BLAST of Lsi01G008900 vs. Swiss-Prot
Match: RL7_PROM4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplL PE=3 SV=1)

HSP 1 Score: 80.9 bits (198), Expect = 1.5e-14
Identity = 51/132 (38.64%), Postives = 76/132 (57.58%), Query Frame = 1 

Query: 37  TQKLERIADELLDLTKLERYDYGILFRLKMGINKYGPAVSGLSAPGSAATGSASAEAKEA 96
           ++K + I D L  L+ LE  +         G++    A   ++APG+    SA+ EA E 
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGGGASAAGEAAE- 61

Query: 97  EKTIFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIE 156
           EKT FD+ LE FDAAAKIK++KEVR  T LGL EAK +VE  P  +K+G +K+    + +
Sbjct: 62  EKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKK 121

Query: 157 KLKELGATAVLE 169
            ++ +G    L+
Sbjct: 122 AIEAVGGKVTLK 132

[Close]
BLAST of Lsi01G008900 vs. Swiss-Prot
Match: RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-14
Identity = 51/128 (39.84%), Postives = 76/128 (59.38%), Query Frame = 1 

Query: 40  LERIADELLDLTKLERYDYGILFRLKMGINKYGPAVSGLSAPGSAATGSASAEAKEAEKT 99
           +E I ++L  LT ++  +       + G++         SAP +A   +   +   AEKT
Sbjct: 4   IESIVEKLSSLTLIQAAELSKRLEEEWGVSA--------SAPVAAVAPAVXXDVAVAEKT 63

Query: 100 IFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA +KI +IKEVR+ TDLGLKEAK+LVE +   L+ GV+KD+ N + +KL+
Sbjct: 64  EFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKKKLE 123

Query: 160 ELGATAVL 168
             GAT  L
Sbjct: 124 AAGATISL 123

[Close]
BLAST of Lsi01G008900 vs. Swiss-Prot
Match: RL7_SYNPX (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-14
Identity = 50/130 (38.46%), Postives = 76/130 (58.46%), Query Frame = 1 

Query: 39  KLERIADELLDLTKLERYDYGILFRLKMGINKYGPAVSGLSAPGSAATGSASAEAKEAEK 98
           K + I + L  L+ LE  +         G++    A   ++APG+AA G     A+E  K
Sbjct: 4   KTDEILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGGGGGEVAEE--K 63

Query: 99  TIFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKL 158
           T FD+ LE FDAAAKIK++K VR  T LGL +AK LVE  P  +K+G++KD+   + +++
Sbjct: 64  TEFDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGISKDEAEALKKEI 123

Query: 159 KELGATAVLE 169
           +E+G    L+
Sbjct: 124 EEVGGKVTLK 131

[Close]
BLAST of Lsi01G008900 vs. Swiss-Prot
Match: RL7_RHIL3 (50S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rplL PE=3 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 4.3e-14
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 1 

Query: 40  LERIADELLDLTKLERYDYGILFRLKMGINKYGPAVSGLSAPGSAATGSASAEAKEAEKT 99
           L +I D+L  LT LE  +   L   K G++   P         +AA G A+A   E EKT
Sbjct: 4   LAKIVDDLSSLTVLEAAELSKLLEEKWGVSAAAPVAV------AAAAGGAAAAVVEEEKT 63

Query: 100 IFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            FD+ L +   A KI +IKEVR  T LGLKEAKDLVE  P  +K+GV K +   I +KL+
Sbjct: 64  EFDVILVEA-GANKINVIKEVRAITGLGLKEAKDLVEAAPKAVKEGVNKAEAADIKKKLE 122

Query: 160 ELGATA 166
           + GA A
Sbjct: 124 DAGAKA 122

[Close]
BLAST of Lsi01G008900 vs. TrEMBL
Match: A0A0A0KLI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495700 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 4.0e-75
Identity = 155/168 (92.26%), Postives = 163/168 (97.02%), Query Frame = 1 

Query: 1   MPSITSKLPAKALVRLLTIAPRPLLVRSLSTVSEERTQKLERIADELLDLTKLERYDYGI 60
           MPSI SKLPAK+LVRLLT+APRPLLVRSLSTV+EERTQKLERIADELLDLTK+ER+DY I
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGINKYGPAVSGLSAPGSAATGSASAEAKEAEKTIFDIKLEKFDAAAKIKIIKEV 120
           LFR KMG+NKYGPAVSGLSAPGSAA GSA+AE KEAEKT+FDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Lsi01G008900 vs. TrEMBL
Match: F6HWW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1232g00020 PE=3 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.8e-54
Identity = 127/170 (74.71%), Postives = 141/170 (82.94%), Query Frame = 1 

Query: 1   MPSITSKLPAKALVRLLTIAPRPLLVRSLSTVSEERTQKLERIADELLDLTKLERYDYGI 60
           M SIT+++P K LVR L  A    L  + +T     TQKLERIADELLDLTKLERYDY I
Sbjct: 1   MHSITTRIPYKTLVRPLFFAQSRNLCSASAT-----TQKLERIADELLDLTKLERYDYSI 60

Query: 61  LFRLKMGINKYGPAVSGLSAPGSAATGSASA--EAKEAEKTIFDIKLEKFDAAAKIKIIK 120
           LFRLK+G+NKYGPAVSGL++  SA+ GS SA  +AK AEKT FDIKLEKFDAAAKIKIIK
Sbjct: 61  LFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIK 120

Query: 121 EVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           EVRTFTDLGLKEAKDLVEK PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 121 EVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 165

[Close]
BLAST of Lsi01G008900 vs. TrEMBL
Match: A0A061DH66_THECC (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein OS=Theobroma cacao GN=TCM_000806 PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 8.1e-52
Identity = 119/172 (69.19%), Postives = 142/172 (82.56%), Query Frame = 1 

Query: 1   MPSITSKLPAKALVRLLTIAPR--PLLVRSLSTVSEERTQKLERIADELLDLTKLERYDY 60
           M S+T+K+P K+L+RL   +P   P+   S +  +E RTQKLERIADELLDLTKLERYDY
Sbjct: 1   MSSVTTKIPTKSLLRLFISSPPKPPISHFSSTATAEARTQKLERIADELLDLTKLERYDY 60

Query: 61  GILFRLKMGINKYGPAVSGLS--APGSAATGSASAEAKEAEKTIFDIKLEKFDAAAKIKI 120
            ILFRLK+G+N+YGPAVSG S  AP +  +GS +AE+K AEKT FDIKLEKFDAAAKIKI
Sbjct: 61  SILFRLKLGLNRYGPAVSGASSAAPSAPGSGSGAAESKAAEKTAFDIKLEKFDAAAKIKI 120

Query: 121 IKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IKEVR FT+LGLKEAKDLVEKVPVV+KKGV K++ + II+KL+ELGAT VLE
Sbjct: 121 IKEVRAFTELGLKEAKDLVEKVPVVVKKGVGKEEADGIIKKLQELGATVVLE 172

[Close]
BLAST of Lsi01G008900 vs. TrEMBL
Match: A5C502_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035768 PE=3 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 1.1e-51
Identity = 120/152 (78.95%), Postives = 131/152 (86.18%), Query Frame = 1 

Query: 22  RPLLV---RSLSTVSEERTQKLERIADELLDLTKLERYDYGILFRLKMGINKYGPAVSGL 81
           RPL     R+L + S   TQKLERIADELLDLTKLERYDY ILFRLK+G+NKYGPAVSGL
Sbjct: 465 RPLFFAQSRNLCSASAT-TQKLERIADELLDLTKLERYDYSILFRLKLGLNKYGPAVSGL 524

Query: 82  SAPGSAATGSASA--EAKEAEKTIFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVE 141
           ++  SA+ GS SA  +AK AEKT FDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVE
Sbjct: 525 ASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVE 584

Query: 142 KVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           K PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 585 KAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 615

[Close]
BLAST of Lsi01G008900 vs. TrEMBL
Match: A0A0D2T620_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G108200 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.0e-51
Identity = 119/176 (67.61%), Postives = 145/176 (82.39%), Query Frame = 1 

Query: 1   MPSITSKLPAKALVRLL-TIAPRPLLVRSLSTVS-----EERTQKLERIADELLDLTKLE 60
           M S  SK+P  +L++LL + +P+P +   +ST +     E RTQKLERIADELLDLTKLE
Sbjct: 1   MASTISKIPTHSLIKLLVSSSPKPPVSCFISTATATATAENRTQKLERIADELLDLTKLE 60

Query: 61  RYDYGILFRLKMGINKYGPAVSGLSAPGSAA--TGSASAEAKEAEKTIFDIKLEKFDAAA 120
           RYDY ILFRLK+G+N+YGPAVSG+S+  ++   TGS++AE K AEKT FDIKLEKFDAAA
Sbjct: 61  RYDYSILFRLKLGLNRYGPAVSGVSSAAASGPGTGSSAAETKTAEKTAFDIKLEKFDAAA 120

Query: 121 KIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           KIKIIKEVRTFT+LGLKEAKD+VEKVPVV+KKGVTK++   II+KL+ELGAT VLE
Sbjct: 121 KIKIIKEVRTFTELGLKEAKDMVEKVPVVVKKGVTKEEAEAIIKKLQELGATVVLE 176

[Close]
BLAST of Lsi01G008900 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 153.3 bits (386), Expect = 1.3e-37
Identity = 88/161 (54.66%), Postives = 113/161 (70.19%), Query Frame = 1 

Query: 10  AKALVRLLTIAPRPLLVRSLSTVS--EERTQKLERIADELLDLTKLERYDYGILFRLKMG 69
           +++L  L    P     R L  V+  E RT+KLERIAD+LL L ++E YDY +LF  K+G
Sbjct: 10  SRSLGYLHRTTPLSSATRHLCAVASPEARTKKLERIADDLLKLNRIELYDYSLLFSHKIG 69

Query: 70  INKYGPAVSGLSAPGSAATGSASAEAKEAEKTIFDIKLEKFDAAAKIKIIKEVRTFTDLG 129
           +N+YG AV+     GS    SAS E K AEKT FD+KLEKF+AA+KIK+IKE+R FTDLG
Sbjct: 70  LNRYGSAVA---VTGSVGDASASTETKTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLG 129

Query: 130 LKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           LKEAK LVEK PV++K G+TK++   I+EKLK +GA   LE
Sbjct: 130 LKEAKALVEKAPVIVKNGLTKEEAEKIMEKLKAVGAIVALE 167

[Close]
BLAST of Lsi01G008900 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 114.8 bits (286), Expect = 5.2e-26
Identity = 67/139 (48.20%), Postives = 93/139 (66.91%), Query Frame = 1 

Query: 36  RTQKLERIADELLDLTKLERYDYGILFRLKMGINKY---GPAVSGLSAPGSAATGSASAE 95
           +++ + +I +EL +LT LE  D   + R K+ I++       + G+S PGS A+ SA  E
Sbjct: 41  QSENVSKIVNELSNLTLLETMDLTEILRQKLNISELPVMAAMMPGMSLPGSGASKSAGGE 100

Query: 96  AKEAEK---TIFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKD 155
            KE +K   T FD+ L+ +DA +KIK+IKEVRT T LGLKEAKDLVEK P +LKKGV+K+
Sbjct: 101 GKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALGLKEAKDLVEKAPTLLKKGVSKE 160

Query: 156 QGNPIIEKLKELGATAVLE 169
           +   IIEKLK +GA   +E
Sbjct: 161 EAEKIIEKLKAVGAKVAME 179

[Close]
BLAST of Lsi01G008900 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-25
Identity = 67/142 (47.18%), Postives = 92/142 (64.79%), Query Frame = 1 

Query: 37  TQKLERIADELLDLTKLERYDYGILFRLKMGINKYGPAVS----------GLSAPGSAAT 96
           T ++ R+ DE+  LT LE  + G +   K G+ +  P V+          G+   G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSASAEAKEAEKTIFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGV 156
            S  +E  + EKT+F+IKLE F+A+AKIKIIKE+R+FTDLGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]
BLAST of Lsi01G008900 vs. TAIR10
Match: AT3G06040.1 (AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 104.4 bits (259), Expect = 7.1e-23
Identity = 64/135 (47.41%), Postives = 89/135 (65.93%), Query Frame = 1 

Query: 37  TQKLERIADELLDLTKLERYDYGILFRLKMGINKYGPAVSGLSAPGSAA---TGSASAEA 96
           + K+  +A+ +  L+  ER   G      + +    P    +S+ G  A   TG+ + E 
Sbjct: 57  SSKIMELAERIAALSPEERKQIGPALNEHLRL----PKQQMISSDGIGAKQDTGAGNVEE 116

Query: 97  KEAEKTIFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNP 156
           K+ EKT FD+KLEKF+A+ KIK+IKEVRTFT LGLKEAK+LVEKVP +LK+GVTK++ N 
Sbjct: 117 KK-EKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANE 176

Query: 157 IIEKLKELGATAVLE 169
           II K+K +G  AV+E
Sbjct: 177 IIAKIKAVGGIAVME 186

[Close]
BLAST of Lsi01G008900 vs. TAIR10
Match: AT2G03130.1 (AT2G03130.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 89.0 bits (219), Expect = 3.1e-18
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 1 

Query: 86  TGSASAEAKEAEKTIFDIKLEKFDAAAKIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKG 145
           +G  + E  +AEKT+F++KLE F+A AKIKIIKEVR    +GLKEA  LV K P VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 146 VTKDQGNPIIEKLKELGATAVLE 169
           ++K++G  ++EKL  LGA AVL+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

[Close]
BLAST of Lsi01G008900 vs. NCBI nr
Match: gi|449448220|ref|XP_004141864.1| (PREDICTED: 50S ribosomal protein L12, cyanelle [Cucumis sativus])

HSP 1 Score: 288.9 bits (738), Expect = 5.8e-75
Identity = 155/168 (92.26%), Postives = 163/168 (97.02%), Query Frame = 1 

Query: 1   MPSITSKLPAKALVRLLTIAPRPLLVRSLSTVSEERTQKLERIADELLDLTKLERYDYGI 60
           MPSI SKLPAK+LVRLLT+APRPLLVRSLSTV+EERTQKLERIADELLDLTK+ER+DY I
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGINKYGPAVSGLSAPGSAATGSASAEAKEAEKTIFDIKLEKFDAAAKIKIIKEV 120
           LFR KMG+NKYGPAVSGLSAPGSAA GSA+AE KEAEKT+FDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Lsi01G008900 vs. NCBI nr
Match: gi|659079707|ref|XP_008440399.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo])

HSP 1 Score: 284.6 bits (727), Expect = 1.1e-73
Identity = 154/168 (91.67%), Postives = 161/168 (95.83%), Query Frame = 1 

Query: 1   MPSITSKLPAKALVRLLTIAPRPLLVRSLSTVSEERTQKLERIADELLDLTKLERYDYGI 60
           MPSI SKLPAK+LVRLLTIAPRPLLVRSLSTV+EERTQKLERIADELLDL K+ER+DY I
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRLKMGINKYGPAVSGLSAPGSAATGSASAEAKEAEKTIFDIKLEKFDAAAKIKIIKEV 120
           LF  KMG+NKYGPAVSGLSAPGSAA GSA+AE KEAEKT+FDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]
BLAST of Lsi01G008900 vs. NCBI nr
Match: gi|1009145413|ref|XP_015890323.1| (PREDICTED: 50S ribosomal protein L7/L12-like [Ziziphus jujuba])

HSP 1 Score: 222.6 bits (566), Expect = 5.1e-55
Identity = 127/176 (72.16%), Postives = 149/176 (84.66%), Query Frame = 1 

Query: 1   MPSITSKLPAKALVRLL---TIAPRPLLVRSL---STVSEERTQKLERIADELLDLTKLE 60
           M S+T+K+P+++LVRL    +  PRP L R+L   +  +E RTQKLERIADELLDLTK+E
Sbjct: 1   MSSLTTKIPSRSLVRLFAPTSATPRPPLSRTLCAPTASTETRTQKLERIADELLDLTKIE 60

Query: 61  RYDYGILFRLKMGINKYGPAVSGLSAPGSAA--TGSASAEAKEAEKTIFDIKLEKFDAAA 120
           RYDY ILFRLKMG+N+YGPAVS  S+ GSA+  +GSAS +AK AEKT FDIKLEKFDAAA
Sbjct: 61  RYDYTILFRLKMGLNRYGPAVSAPSSTGSASAGSGSASGDAKVAEKTAFDIKLEKFDAAA 120

Query: 121 KIKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           KIKIIKEVRTFTDLGLKEAK+LVEKVPVVLKKG+TK++  PI+EKLKELGAT VLE
Sbjct: 121 KIKIIKEVRTFTDLGLKEAKELVEKVPVVLKKGLTKEEAGPIVEKLKELGATVVLE 176

[Close]
BLAST of Lsi01G008900 vs. NCBI nr
Match: gi|225468320|ref|XP_002271482.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 220.3 bits (560), Expect = 2.5e-54
Identity = 127/170 (74.71%), Postives = 141/170 (82.94%), Query Frame = 1 

Query: 1   MPSITSKLPAKALVRLLTIAPRPLLVRSLSTVSEERTQKLERIADELLDLTKLERYDYGI 60
           M SIT+++P K LVR L  A    L  + +T     TQKLERIADELLDLTKLERYDY I
Sbjct: 1   MHSITTRIPYKTLVRPLFFAQSRNLCSASAT-----TQKLERIADELLDLTKLERYDYSI 60

Query: 61  LFRLKMGINKYGPAVSGLSAPGSAATGSASA--EAKEAEKTIFDIKLEKFDAAAKIKIIK 120
           LFRLK+G+NKYGPAVSGL++  SA+ GS SA  +AK AEKT FDIKLEKFDAAAKIKIIK
Sbjct: 61  LFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIK 120

Query: 121 EVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           EVRTFTDLGLKEAKDLVEK PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 121 EVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 165

[Close]
BLAST of Lsi01G008900 vs. NCBI nr
Match: gi|590705821|ref|XP_007047548.1| (Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein [Theobroma cacao])

HSP 1 Score: 211.5 bits (537), Expect = 1.2e-51
Identity = 119/172 (69.19%), Postives = 142/172 (82.56%), Query Frame = 1 

Query: 1   MPSITSKLPAKALVRLLTIAPR--PLLVRSLSTVSEERTQKLERIADELLDLTKLERYDY 60
           M S+T+K+P K+L+RL   +P   P+   S +  +E RTQKLERIADELLDLTKLERYDY
Sbjct: 1   MSSVTTKIPTKSLLRLFISSPPKPPISHFSSTATAEARTQKLERIADELLDLTKLERYDY 60

Query: 61  GILFRLKMGINKYGPAVSGLS--APGSAATGSASAEAKEAEKTIFDIKLEKFDAAAKIKI 120
            ILFRLK+G+N+YGPAVSG S  AP +  +GS +AE+K AEKT FDIKLEKFDAAAKIKI
Sbjct: 61  SILFRLKLGLNRYGPAVSGASSAAPSAPGSGSGAAESKAAEKTAFDIKLEKFDAAAKIKI 120

Query: 121 IKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IKEVR FT+LGLKEAKDLVEKVPVV+KKGV K++ + II+KL+ELGAT VLE
Sbjct: 121 IKEVRAFTELGLKEAKDLVEKVPVVVKKGVGKEEADGIIKKLQELGATVVLE 172

The following BLAST results are available for this feature:
BLAST of Lsi01G008900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RL7_LIBAF6.1e-1642.1950S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1[more]
RL7_PROM41.5e-1438.6450S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpl... [more]
RL7_LIBAC1.9e-1439.8450S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL P... [more]
RL7_SYNPX4.3e-1438.4650S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 S... [more]
RL7_RHIL34.3e-1443.6550S ribosomal protein L7/L12 OS=Rhizobium leguminosarum bv. viciae (strain 3841)... [more]
BLAST of Lsi01G008900 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KLI9_CUCSA4.0e-7592.26Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495700 PE=4 SV=1[more]
F6HWW7_VITVI1.8e-5474.71Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1232g00020 PE=3 SV=... [more]
A0A061DH66_THECC8.1e-5269.19Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
A5C502_VITVI1.1e-5178.95Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035768 PE=3 SV=1[more]
A0A0D2T620_GOSRA4.0e-5167.61Uncharacterized protein OS=Gossypium raimondii GN=B456_011G108200 PE=3 SV=1[more]
BLAST of Lsi01G008900 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G37660.11.3e-3754.66 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT4G36420.15.2e-2648.20 Ribosomal protein L12 family protein[more]
AT1G70190.12.0e-2547.18 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ... [more]
AT3G06040.17.1e-2347.41 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
AT2G03130.13.1e-1855.42 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl... [more]
BLAST of Lsi01G008900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449448220|ref|XP_004141864.1|5.8e-7592.26PREDICTED: 50S ribosomal protein L12, cyanelle [Cucumis sativus][more]
gi|659079707|ref|XP_008440399.1|1.1e-7391.67PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo][more]
gi|1009145413|ref|XP_015890323.1|5.1e-5572.16PREDICTED: 50S ribosomal protein L7/L12-like [Ziziphus jujuba][more]
gi|225468320|ref|XP_002271482.1|2.5e-5474.71PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera][more]
gi|590705821|ref|XP_007047548.1|1.2e-5169.19Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family pr... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: INTERPRO
TermDefinition
IPR014719Ribosomal_L7/12_C/ClpS-like
IPR013823Ribosomal_L7/L12_C
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0022900 electron transport chain
biological_process GO:0042254 ribosome biogenesis
biological_process GO:0006412 translation
biological_process GO:0006354 DNA-templated transcription, elongation
biological_process GO:0006508 proteolysis
biological_process GO:0032543 mitochondrial translation
biological_process GO:0006839 mitochondrial transport
cellular_component GO:0005840 ribosome
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0005743 mitochondrial inner membrane
cellular_component GO:0005762 mitochondrial large ribosomal subunit
molecular_function GO:0016651 oxidoreductase activity, acting on NAD(P)H
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0008233 peptidase activity
molecular_function GO:0022857 transmembrane transporter activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi01G008900.1Lsi01G008900.1mRNA


InterPro
Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013823Ribosomal protein L7/L12, C-terminalPRODOMPD001326coord: 102..162
score: 1.0
IPR013823Ribosomal protein L7/L12, C-terminalPFAMPF00542Ribosomal_L12coord: 101..167
score: 1.1
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeGENE3DG3DSA:3.30.1390.10coord: 95..167
score: 9.8
IPR014719Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-likeunknownSSF54736ClpS-likecoord: 97..167
score: 4.53
NoneNo IPR availablePANTHERPTHR24089FAMILY NOT NAMEDcoord: 12..168
score: 2.1
NoneNo IPR availablePANTHERPTHR24089:SF375SUBFAMILY NOT NAMEDcoord: 12..168
score: 2.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Lsi01G008900Csa6G495700Cucumber (Chinese Long) v2culsiB434
Lsi01G008900CSPI06G28950Wild cucumber (PI 183967)cpilsiB439
Lsi01G008900CmaCh03G009120Cucurbita maxima (Rimu)cmalsiB597
Lsi01G008900CmoCh07G006560Cucurbita moschata (Rifu)cmolsiB774
Lsi01G008900Cla014033Watermelon (97103) v1lsiwmB144
Lsi01G008900MELO3C007639Melon (DHL92) v3.5.1lsimeB156
Lsi01G008900ClCG01G017620Watermelon (Charleston Gray)lsiwcgB127
Lsi01G008900MELO3C007639.2Melon (DHL92) v3.6.1lsimedB163
Lsi01G008900Cla97C01G016790Watermelon (97103) v2lsiwmbB115
Lsi01G008900Bhi03G000797Wax gourdlsiwgoB180
Lsi01G008900Cp4.1LG19g10700Cucurbita pepo (Zucchini)cpelsiB396
Lsi01G008900CsGy6G028420Cucumber (Gy14) v2cgyblsiB398
Lsi01G008900CsaV3_6G044160Cucumber (Chinese Long) v3cuclsiB462
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Lsi01G008900Melon (DHL92) v3.6.1lsimedB142
Lsi01G008900Melon (DHL92) v3.6.1lsimedB153
Lsi01G008900Silver-seed gourdcarlsiB001
Lsi01G008900Silver-seed gourdcarlsiB293
Lsi01G008900Silver-seed gourdcarlsiB340
Lsi01G008900Silver-seed gourdcarlsiB364
Lsi01G008900Silver-seed gourdcarlsiB707
Lsi01G008900Cucumber (Chinese Long) v3cuclsiB113
Lsi01G008900Cucumber (Chinese Long) v3cuclsiB283
Lsi01G008900Watermelon (97103) v2lsiwmbB150
Lsi01G008900Wax gourdlsiwgoB156
Lsi01G008900Bottle gourd (USVL1VR-Ls)lsilsiB087
Lsi01G008900Bottle gourd (USVL1VR-Ls)lsilsiB076
Lsi01G008900Cucumber (Gy14) v1cgylsiB125
Lsi01G008900Cucumber (Gy14) v1cgylsiB567
Lsi01G008900Cucumber (Gy14) v1cgylsiB634
Lsi01G008900Cucurbita maxima (Rimu)cmalsiB016
Lsi01G008900Cucurbita maxima (Rimu)cmalsiB304
Lsi01G008900Cucurbita maxima (Rimu)cmalsiB640
Lsi01G008900Cucurbita maxima (Rimu)cmalsiB786
Lsi01G008900Cucurbita moschata (Rifu)cmolsiB004
Lsi01G008900Cucurbita moschata (Rifu)cmolsiB154
Lsi01G008900Cucurbita moschata (Rifu)cmolsiB291
Lsi01G008900Cucurbita moschata (Rifu)cmolsiB392
Lsi01G008900Cucurbita moschata (Rifu)cmolsiB582
Lsi01G008900Cucurbita moschata (Rifu)cmolsiB627
Lsi01G008900Cucurbita pepo (Zucchini)cpelsiB054
Lsi01G008900Cucurbita pepo (Zucchini)cpelsiB325
Lsi01G008900Wild cucumber (PI 183967)cpilsiB103
Lsi01G008900Wild cucumber (PI 183967)cpilsiB261
Lsi01G008900Cucumber (Chinese Long) v2culsiB105
Lsi01G008900Cucumber (Chinese Long) v2culsiB262
Lsi01G008900Melon (DHL92) v3.5.1lsimeB135
Lsi01G008900Melon (DHL92) v3.5.1lsimeB147
Lsi01G008900Watermelon (Charleston Gray)lsiwcgB153
Lsi01G008900Watermelon (97103) v1lsiwmB133
Lsi01G008900Cucumber (Gy14) v2cgyblsiB095
Lsi01G008900Cucumber (Gy14) v2cgyblsiB246