CmaCh03G009120.1 (mRNA) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh03G009120.1
Type	mRNA
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	50S ribosomal protein L7/L12
Location	Cma_Chr03 : 6612032 .. 6612538 (-)
Sequence length	507

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCATCAATTGCCTCTAAACTTCCGGCCAAAGCTTTGGTGAGACTTCTCACTGTCGCTTCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGATGCTCGACCTTACTAAAATCGAACGGCACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTGAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCTCTGCCGAAGCAAAGGAGGCTGAGAAAACCGTGTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACCAGTTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAGGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCCACTGCGGTACTGGAATGA

mRNA sequence

ATGTCATCAATTGCCTCTAAACTTCCGGCCAAAGCTTTGGTGAGACTTCTCACTGTCGCTTCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGATGCTCGACCTTACTAAAATCGAACGGCACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTGAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCTCTGCCGAAGCAAAGGAGGCTGAGAAAACCGTGTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACCAGTTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAGGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCCACTGCGGTACTGGAATGA

Coding sequence (CDS)

ATGTCATCAATTGCCTCTAAACTTCCGGCCAAAGCTTTGGTGAGACTTCTCACTGTCGCTTCAAGACCATTGCTAGTTCGCTCCCTCAGCACCGTCTCCGAGGAACGAACCCAGAAACTCGAGAGGATCGCCGATGAGATGCTCGACCTTACTAAAATCGAACGGCACGACTATGCCATCCTCTTCCGGTTGAAAATGGGGTTGAACAAGTACGGGCCTGCAGTTTCTGGGCTAAGTGCACCAGGTTCAGCCGCCGCCGGATCTGCCTCTGCCGAAGCAAAGGAGGCTGAGAAAACCGTGTTTGATATAAAGCTCGAGAAATTTGATGCGGCGGCGAAGATCAAGATCATAAAGGAGGTAAGAACGTTCACCAGTTTGGGTCTGAAGGAGGCTAAGGATTTGGTGGAGAAGGTGCCCGTGGTGCTCAAGAAGGGAGTAACGAAGGATCAGGGAAACCCAATTATTGAAAAGCTTAAGGAATTGGGAGCCACTGCGGTACTGGAATGA

Protein sequence

MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE

Homology

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BLAST of CmaCh03G009120.1 vs. Swiss-Prot
Match: RL7_LIBAF (50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 5.1e-15
Identity = 52/128 (40.62%), Postives = 73/128 (57.03%), Query Frame = 1


Query: 40  LERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKT 99
           +E I +++  LT ++  + +     + G++   P     SA G +AA  A       EKT
Sbjct: 4   IESIVEKLSSLTLLQAAELSKRLEEEWGVSAAAPVAVVASAAGESAAAVA-------EKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA  KI +IKEVR  T LGLKEAKD VE  P  LK GV+KD+   + +KL+
Sbjct: 64  EFEVFLEGFDAKKKISVIKEVRAITELGLKEAKDFVESAPKSLKTGVSKDEAEELKKKLE 123

Query: 160 ELGATAVL 168
             GAT +L
Sbjct: 124 AAGATIIL 124

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BLAST of CmaCh03G009120.1 vs. Swiss-Prot
Match: RL7_THEM4 (50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CIP 104789 / BI429) GN=rplL PE=3 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 8.7e-15
Identity = 59/134 (44.03%), Postives = 79/134 (58.96%), Query Frame = 1


Query: 38  QKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAE 97
           +KLE+I +E+  LT  E  +   +   K G++   P V  +   G+AA G A+AE    E
Sbjct: 2   EKLEQIVNEIEQLTVAELAELVKMLEDKFGVSASAP-VMAMPVAGAAAGGGAAAE----E 61

Query: 98  KTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKV---PVVLKKGVTKDQGNPI 157
           KT FD+ L+ F  A KI +IK VR  T LGLKEAKDLVEK      V+K+GV KD+   I
Sbjct: 62  KTEFDVVLKSF-GAKKINVIKVVREITGLGLKEAKDLVEKAGTPDAVIKQGVNKDEAEEI 121

Query: 158 IEKLKELGATAVLE 169
            +KL+E GA   L+
Sbjct: 122 KKKLEEAGAEVELK 129

[Close]

BLAST of CmaCh03G009120.1 vs. Swiss-Prot
Match: RL7_PROM4 (50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rplL PE=3 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 1.9e-14
Identity = 49/132 (37.12%), Postives = 76/132 (57.58%), Query Frame = 1


Query: 37  TQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEA 96
           ++K + I D +  L+ +E  +         G++    A   ++APG+    SA+ EA E 
Sbjct: 2   SKKTDEILDSLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAGGGASAAGEAAE- 61

Query: 97  EKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIE 156
           EKT FD+ LE FDAAAKIK++KEVR  T LGL EAK +VE  P  +K+G +K+    + +
Sbjct: 62  EKTEFDVILESFDAAAKIKVLKEVRNATGLGLGEAKAMVEAAPKTIKEGASKEDAEALKK 121

Query: 157 KLKELGATAVLE 169
            ++ +G    L+
Sbjct: 122 AIEAVGGKVTLK 132

[Close]

BLAST of CmaCh03G009120.1 vs. Swiss-Prot
Match: RL7_SYNPX (50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-14
Identity = 48/130 (36.92%), Postives = 76/130 (58.46%), Query Frame = 1


Query: 39  KLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEK 98
           K + I + +  L+ +E  +         G++    A   ++APG+AA G     A+E  K
Sbjct: 4   KTDEILESLKSLSLLEASELVKQIEEAFGVSAAASAGVVMAAPGAAAGGGGGEVAEE--K 63

Query: 99  TVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKL 158
           T FD+ LE FDAAAKIK++K VR  T LGL +AK LVE  P  +K+G++KD+   + +++
Sbjct: 64  TEFDVILESFDAAAKIKVLKAVRNATGLGLGDAKALVEAAPKPIKEGISKDEAEALKKEI 123

Query: 159 KELGATAVLE 169
           +E+G    L+
Sbjct: 124 EEVGGKVTLK 131

[Close]

BLAST of CmaCh03G009120.1 vs. Swiss-Prot
Match: RL7_LIBAC (50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 9.7e-14
Identity = 51/128 (39.84%), Postives = 77/128 (60.16%), Query Frame = 1


Query: 40  LERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKT 99
           +E I +++  LT I+  + +     + G++         SAP +A A +   +   AEKT
Sbjct: 4   IESIVEKLSSLTLIQAAELSKRLEEEWGVSA--------SAPVAAVAPAVXXDVAVAEKT 63

Query: 100 VFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLK 159
            F++ LE FDA +KI +IKEVR+ T LGLKEAK+LVE +   L+ GV+KD+ N + +KL+
Sbjct: 64  EFEVFLESFDAKSKISVIKEVRSITDLGLKEAKELVEALLKSLRTGVSKDEANELKKKLE 123

Query: 160 ELGATAVL 168
             GAT  L
Sbjct: 124 AAGATISL 123

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BLAST of CmaCh03G009120.1 vs. TrEMBL
Match: A0A0A0KLI9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495700 PE=4 SV=1)

HSP 1 Score: 286.6 bits (732), Expect = 2.0e-74
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAK+LVRLLTVA RPLLVRSLSTV+EERTQKLERIADE+LDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of CmaCh03G009120.1 vs. TrEMBL
Match: F6HWW7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1232g00020 PE=3 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.6e-52
Identity = 124/170 (72.94%), Postives = 141/170 (82.94%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SI +++P K LVR L  A    L  + +T     TQKLERIADE+LDLTK+ER+DY+I
Sbjct: 1   MHSITTRIPYKTLVRPLFFAQSRNLCSASAT-----TQKLERIADELLDLTKLERYDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASA--EAKEAEKTVFDIKLEKFDAAAKIKIIK 120
           LFRLK+GLNKYGPAVSGL++  SA+AGS SA  +AK AEKT FDIKLEKFDAAAKIKIIK
Sbjct: 61  LFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIK 120

Query: 121 EVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           EVRTFT LGLKEAKDLVEK PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 121 EVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 165

[Close]

BLAST of CmaCh03G009120.1 vs. TrEMBL
Match: A0A067KAN8_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12544 PE=3 SV=1)

HSP 1 Score: 211.8 bits (538), Expect = 6.2e-52
Identity = 126/175 (72.00%), Postives = 142/175 (81.14%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSL------STVSEERTQKLERIADEMLDLTKIE 60
           M SIA K+ +K L+RLL   S+P+  RSL      S+VSE +TQKLERIAD++LDL KIE
Sbjct: 1   MHSIAVKMHSKTLIRLLNFTSKPIS-RSLCTASTTSSVSETQTQKLERIADQLLDLNKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAE-KTVFDIKLEKFDAAAK 120
           RHDYA+LFR KMG +++ PA+SG    GSAAAGS  A AK AE KT FDIKLEKFDAAAK
Sbjct: 61  RHDYAVLFRHKMGFHRHSPALSGAVLSGSAAAGSGPAAAKPAEEKTAFDIKLEKFDAAAK 120

Query: 121 IKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IKIIKEVRTFT LGLKEAKDLVEKVPVVLKKGVTK++ NPIIEKLKELGAT VLE
Sbjct: 121 IKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKEEANPIIEKLKELGATVVLE 174

[Close]

BLAST of CmaCh03G009120.1 vs. TrEMBL
Match: M5XML3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012547mg PE=4 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 4.0e-51
Identity = 113/168 (67.26%), Postives = 142/168 (84.52%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           MS++ +K+  +++ R +T  SRP    + +T +E +TQKLERIADE+L+LTKIERHDY+I
Sbjct: 1   MSNVTTKVLCRSVSRFVTALSRPF--STATTANETQTQKLERIADELLNLTKIERHDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFRLKMGLN+YGPA+SG+  P S+ +GSAS +AK  EKT FDIK+EKFDAAAKIKIIKEV
Sbjct: 61  LFRLKMGLNRYGPAISGIG-PTSSESGSASTDAKAVEKTAFDIKIEKFDAAAKIKIIKEV 120

Query: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAK+LVEKVPVV+KKG+TK++  PI++KLKELGAT VLE
Sbjct: 121 RTFTDLGLKEAKELVEKVPVVVKKGLTKEEAGPIVDKLKELGATVVLE 165

[Close]

BLAST of CmaCh03G009120.1 vs. TrEMBL
Match: W9SMR4_9ROSA (50S ribosomal protein OS=Morus notabilis GN=L484_000205 PE=3 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 9.0e-51
Identity = 122/173 (70.52%), Postives = 137/173 (79.19%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVS----EERTQKLERIADEMLDLTKIERH 60
           MSSIA+K+P       +  A+  L   SLST +    E R+QKLERIADE+LDLTK+ERH
Sbjct: 1   MSSIATKIPTTTRFLPMLFATNLLSRASLSTATAAGTESRSQKLERIADELLDLTKLERH 60

Query: 61  DYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASA-EAKEAEKTVFDIKLEKFDAAAKIK 120
           DYA+LFRLKMGL++YGPAVS    P S  +G A A EAK AEKT FDIKLEKFDAAAKIK
Sbjct: 61  DYAVLFRLKMGLDRYGPAVSTAPGPASGGSGEAGAGEAKAAEKTAFDIKLEKFDAAAKIK 120

Query: 121 IIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IIKEVR+FT LGLKEAKDLVEKVPVVLKKGVTK++  PIIEKLKELGAT VLE
Sbjct: 121 IIKEVRSFTDLGLKEAKDLVEKVPVVLKKGVTKEEAGPIIEKLKELGATVVLE 173

[Close]

BLAST of CmaCh03G009120.1 vs. TAIR10
Match: AT4G37660.1 (AT4G37660.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 150.6 bits (379), Expect = 8.6e-37
Identity = 81/135 (60.00%), Postives = 103/135 (76.30%), Query Frame = 1


Query: 34  EERTQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEA 93
           E RT+KLERIAD++L L +IE +DY++LF  K+GLN+YG AV+     GS    SAS E 
Sbjct: 36  EARTKKLERIADDLLKLNRIELYDYSLLFSHKIGLNRYGSAVA---VTGSVGDASASTET 95

Query: 94  KEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNP 153
           K AEKT FD+KLEKF+AA+KIK+IKE+R FT LGLKEAK LVEK PV++K G+TK++   
Sbjct: 96  KTAEKTTFDVKLEKFEAASKIKVIKEIRAFTDLGLKEAKALVEKAPVIVKNGLTKEEAEK 155

Query: 154 IIEKLKELGATAVLE 169
           I+EKLK +GA   LE
Sbjct: 156 IMEKLKAVGAIVALE 167

[Close]

BLAST of CmaCh03G009120.1 vs. TAIR10
Match: AT4G36420.1 (AT4G36420.1 Ribosomal protein L12 family protein)

HSP 1 Score: 112.8 bits (281), Expect = 2.0e-25
Identity = 73/161 (45.34%), Postives = 103/161 (63.98%), Query Frame = 1


Query: 14  VRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAILFRLKMGLNKY-- 73
           V+L T+ SR     S +T SE     + +I +E+ +LT +E  D   + R K+ +++   
Sbjct: 25  VQLFTIQSRSY--SSPATQSEN----VSKIVNELSNLTLLETMDLTEILRQKLNISELPV 84

Query: 74  -GPAVSGLSAPGSAAAGSASAEAKEAEK---TVFDIKLEKFDAAAKIKIIKEVRTFTSLG 133
               + G+S PGS A+ SA  E KE +K   T FD+ L+ +DA +KIK+IKEVRT T+LG
Sbjct: 85  MAAMMPGMSLPGSGASKSAGGEGKEKKKEAKTAFDVMLQAYDAVSKIKVIKEVRTITALG 144

Query: 134 LKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           LKEAKDLVEK P +LKKGV+K++   IIEKLK +GA   +E
Sbjct: 145 LKEAKDLVEKAPTLLKKGVSKEEAEKIIEKLKAVGAKVAME 179

[Close]

BLAST of CmaCh03G009120.1 vs. TAIR10
Match: AT1G70190.1 (AT1G70190.1 Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like)

HSP 1 Score: 107.1 bits (266), Expect = 1.1e-23
Identity = 65/142 (45.77%), Postives = 90/142 (63.38%), Query Frame = 1


Query: 37  TQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVS----------GLSAPGSAAA 96
           T ++ R+ DE+  LT +E  +   +   K G+ +  P V+          G+   G   +
Sbjct: 68  TDRVFRLVDEISSLTLLEISELGSIIMKKKGMTEL-PTVAVMKPGAGGGVGVGGGGGMVS 127

Query: 97  GSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGV 156
            S  +E  + EKTVF+IKLE F+A+AKIKIIKE+R+FT LGLKEAK LVEK P +LK G+
Sbjct: 128 QSGVSEEAKVEKTVFEIKLESFEASAKIKIIKELRSFTDLGLKEAKALVEKTPAILKAGL 187

Query: 157 TKDQGNPIIEKLKELGATAVLE 169
           +K++G  I+EKLK LGA  VLE
Sbjct: 188 SKEEGEKILEKLKALGAKVVLE 208

[Close]

BLAST of CmaCh03G009120.1 vs. TAIR10
Match: AT3G06040.1 (AT3G06040.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 102.4 bits (254), Expect = 2.7e-22
Identity = 63/133 (47.37%), Postives = 86/133 (64.66%), Query Frame = 1


Query: 37  TQKLERIADEMLDLTKIERHDYAILFRLKMGLNKYGPAVS-GLSAPGSAAAGSASAEAKE 96
           + K+  +A+ +  L+  ER          + L K     S G+ A     AG+     ++
Sbjct: 57  SSKIMELAERIAALSPEERKQIGPALNEHLRLPKQQMISSDGIGAKQDTGAGNVE---EK 116

Query: 97  AEKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPII 156
            EKT FD+KLEKF+A+ KIK+IKEVRTFTSLGLKEAK+LVEKVP +LK+GVTK++ N II
Sbjct: 117 KEKTAFDVKLEKFNASDKIKVIKEVRTFTSLGLKEAKELVEKVPAILKQGVTKEEANEII 176

Query: 157 EKLKELGATAVLE 169
            K+K +G  AV+E
Sbjct: 177 AKIKAVGGIAVME 186

[Close]

BLAST of CmaCh03G009120.1 vs. TAIR10
Match: AT2G03130.1 (AT2G03130.1 Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein)

HSP 1 Score: 88.6 bits (218), Expect = 4.0e-18
Identity = 47/83 (56.63%), Postives = 61/83 (73.49%), Query Frame = 1


Query: 86  AGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKG 145
           +G  + E  +AEKTVF++KLE F+A AKIKIIKEVR    +GLKEA  LV K P VLK G
Sbjct: 9   SGGGANEGAKAEKTVFEVKLESFEARAKIKIIKEVRRIIGVGLKEAMKLVVKAPTVLKTG 68

Query: 146 VTKDQGNPIIEKLKELGATAVLE 169
           ++K++G  ++EKL  LGA AVL+
Sbjct: 69  LSKEEGEEVVEKLNALGAEAVLQ 91

[Close]

BLAST of CmaCh03G009120.1 vs. NCBI nr
Match: gi|449448220|ref|XP_004141864.1| (PREDICTED: 50S ribosomal protein L12, cyanelle [Cucumis sativus])

HSP 1 Score: 286.6 bits (732), Expect = 2.9e-74
Identity = 159/168 (94.64%), Postives = 163/168 (97.02%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAK+LVRLLTVA RPLLVRSLSTV+EERTQKLERIADE+LDLTKIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTVAPRPLLVRSLSTVAEERTQKLERIADELLDLTKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LFR KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFRYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of CmaCh03G009120.1 vs. NCBI nr
Match: gi|659079707|ref|XP_008440399.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo])

HSP 1 Score: 281.6 bits (719), Expect = 9.2e-73
Identity = 156/168 (92.86%), Postives = 161/168 (95.83%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SIASKLPAK+LVRLLT+A RPLLVRSLSTV+EERTQKLERIADE+LDL KIERHDYAI
Sbjct: 1   MPSIASKLPAKSLVRLLTIAPRPLLVRSLSTVAEERTQKLERIADELLDLNKIERHDYAI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAEKTVFDIKLEKFDAAAKIKIIKEV 120
           LF  KMGLNKYGPAVSGLSAPGSAAAGSA+AE KEAEKTVFDIKLEKFDAAAKIKIIKEV
Sbjct: 61  LFGYKMGLNKYGPAVSGLSAPGSAAAGSAAAETKEAEKTVFDIKLEKFDAAAKIKIIKEV 120

Query: 121 RTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           RTFT LGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE
Sbjct: 121 RTFTDLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 168

[Close]

BLAST of CmaCh03G009120.1 vs. NCBI nr
Match: gi|1009145413|ref|XP_015890323.1| (PREDICTED: 50S ribosomal protein L7/L12-like [Ziziphus jujuba])

HSP 1 Score: 217.2 bits (552), Expect = 2.1e-53
Identity = 127/176 (72.16%), Postives = 147/176 (83.52%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVAS---RPLLVRSL---STVSEERTQKLERIADEMLDLTKIE 60
           MSS+ +K+P+++LVRL    S   RP L R+L   +  +E RTQKLERIADE+LDLTKIE
Sbjct: 1   MSSLTTKIPSRSLVRLFAPTSATPRPPLSRTLCAPTASTETRTQKLERIADELLDLTKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASA--EAKEAEKTVFDIKLEKFDAAA 120
           R+DY ILFRLKMGLN+YGPAVS  S+ GSA+AGS SA  +AK AEKT FDIKLEKFDAAA
Sbjct: 61  RYDYTILFRLKMGLNRYGPAVSAPSSTGSASAGSGSASGDAKVAEKTAFDIKLEKFDAAA 120

Query: 121 KIKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           KIKIIKEVRTFT LGLKEAK+LVEKVPVVLKKG+TK++  PI+EKLKELGAT VLE
Sbjct: 121 KIKIIKEVRTFTDLGLKEAKELVEKVPVVLKKGLTKEEAGPIVEKLKELGATVVLE 176

[Close]

BLAST of CmaCh03G009120.1 vs. NCBI nr
Match: gi|225468320|ref|XP_002271482.1| (PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera])

HSP 1 Score: 213.8 bits (543), Expect = 2.4e-52
Identity = 124/170 (72.94%), Postives = 141/170 (82.94%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSLSTVSEERTQKLERIADEMLDLTKIERHDYAI 60
           M SI +++P K LVR L  A    L  + +T     TQKLERIADE+LDLTK+ER+DY+I
Sbjct: 1   MHSITTRIPYKTLVRPLFFAQSRNLCSASAT-----TQKLERIADELLDLTKLERYDYSI 60

Query: 61  LFRLKMGLNKYGPAVSGLSAPGSAAAGSASA--EAKEAEKTVFDIKLEKFDAAAKIKIIK 120
           LFRLK+GLNKYGPAVSGL++  SA+AGS SA  +AK AEKT FDIKLEKFDAAAKIKIIK
Sbjct: 61  LFRLKLGLNKYGPAVSGLASADSASAGSGSAPADAKAAEKTAFDIKLEKFDAAAKIKIIK 120

Query: 121 EVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           EVRTFT LGLKEAKDLVEK PVVLKKGVTK++GNPI+EKLKELGAT VLE
Sbjct: 121 EVRTFTDLGLKEAKDLVEKAPVVLKKGVTKEEGNPIVEKLKELGATVVLE 165

[Close]

BLAST of CmaCh03G009120.1 vs. NCBI nr
Match: gi|802645979|ref|XP_012079421.1| (PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas])

HSP 1 Score: 211.8 bits (538), Expect = 8.9e-52
Identity = 126/175 (72.00%), Postives = 142/175 (81.14%), Query Frame = 1


Query: 1   MSSIASKLPAKALVRLLTVASRPLLVRSL------STVSEERTQKLERIADEMLDLTKIE 60
           M SIA K+ +K L+RLL   S+P+  RSL      S+VSE +TQKLERIAD++LDL KIE
Sbjct: 1   MHSIAVKMHSKTLIRLLNFTSKPIS-RSLCTASTTSSVSETQTQKLERIADQLLDLNKIE 60

Query: 61  RHDYAILFRLKMGLNKYGPAVSGLSAPGSAAAGSASAEAKEAE-KTVFDIKLEKFDAAAK 120
           RHDYA+LFR KMG +++ PA+SG    GSAAAGS  A AK AE KT FDIKLEKFDAAAK
Sbjct: 61  RHDYAVLFRHKMGFHRHSPALSGAVLSGSAAAGSGPAAAKPAEEKTAFDIKLEKFDAAAK 120

Query: 121 IKIIKEVRTFTSLGLKEAKDLVEKVPVVLKKGVTKDQGNPIIEKLKELGATAVLE 169
           IKIIKEVRTFT LGLKEAKDLVEKVPVVLKKGVTK++ NPIIEKLKELGAT VLE
Sbjct: 121 IKIIKEVRTFTDLGLKEAKDLVEKVPVVLKKGVTKEEANPIIEKLKELGATVVLE 174

The following BLAST results are available for this feature:

BLAST of CmaCh03G009120.1 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RL7_LIBAF	5.1e-15	40.63	50S ribosomal protein L7/L12 OS=Liberibacter africanus GN=rplL PE=3 SV=1	[more]
RL7_THEM4	8.7e-15	44.03	50S ribosomal protein L7/L12 OS=Thermosipho melanesiensis (strain DSM 12029 / CI...	[more]
RL7_PROM4	1.9e-14	37.12	50S ribosomal protein L7/L12 OS=Prochlorococcus marinus (strain MIT 9211) GN=rpl...	[more]
RL7_SYNPX	5.7e-14	36.92	50S ribosomal protein L7/L12 OS=Synechococcus sp. (strain WH8102) GN=rplL PE=3 S...	[more]
RL7_LIBAC	9.7e-14	39.84	50S ribosomal protein L7/L12 OS=Liberibacter africanus subsp. capensis GN=rplL P...	[more]

BLAST of CmaCh03G009120.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KLI9_CUCSA	2.0e-74	94.64	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G495700 PE=4 SV=1	[more]
F6HWW7_VITVI	1.6e-52	72.94	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_00s1232g00020 PE=3 SV=...	[more]
A0A067KAN8_JATCU	6.2e-52	72.00	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12544 PE=3 SV=1	[more]
M5XML3_PRUPE	4.0e-51	67.26	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012547mg PE=4 SV=1	[more]
W9SMR4_9ROSA	9.0e-51	70.52	50S ribosomal protein OS=Morus notabilis GN=L484_000205 PE=3 SV=1	[more]

BLAST of CmaCh03G009120.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G37660.1	8.6e-37	60.00	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]
AT4G36420.1	2.0e-25	45.34	Ribosomal protein L12 family protein	[more]
AT1G70190.1	1.1e-23	45.77	Ribosomal protein L7/L12, oligomerisation;Ribosomal protein L7/L12, ...	[more]
AT3G06040.1	2.7e-22	47.37	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]
AT2G03130.1	4.0e-18	56.63	Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein Cl...	[more]

BLAST of CmaCh03G009120.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449448220\|ref\|XP_004141864.1\|	2.9e-74	94.64	PREDICTED: 50S ribosomal protein L12, cyanelle [Cucumis sativus]	[more]
gi\|659079707\|ref\|XP_008440399.1\|	9.2e-73	92.86	PREDICTED: 50S ribosomal protein L12, chloroplastic [Cucumis melo]	[more]
gi\|1009145413\|ref\|XP_015890323.1\|	2.1e-53	72.16	PREDICTED: 50S ribosomal protein L7/L12-like [Ziziphus jujuba]	[more]
gi\|225468320\|ref\|XP_002271482.1\|	2.4e-52	72.94	PREDICTED: 50S ribosomal protein L12, chloroplastic-like [Vitis vinifera]	[more]
gi\|802645979\|ref\|XP_012079421.1\|	8.9e-52	72.00	PREDICTED: 50S ribosomal protein L12, cyanelle-like [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR013823	Ribosomal_L7/L12_C
IPR014719	Ribosomal_L7/12_C/ClpS-like

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
biological_process	GO:0006354	DNA-templated transcription, elongation
biological_process	GO:0022900	electron transport chain
biological_process	GO:0042254	ribosome biogenesis
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CmaCh03G009120	CmaCh03G009120	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CmaCh03G009120.1	CmaCh03G009120.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G009120.1.CDS.1	CmaCh03G009120.1.CDS.1	CDS

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CmaCh03G009120.1.exon.1	CmaCh03G009120.1.exon.1	exon

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013823	Ribosomal protein L7/L12, C-terminal	PRODOM	PD001326		coord: 102..162 score: 3.0
IPR013823	Ribosomal protein L7/L12, C-terminal	PFAM	PF00542	Ribosomal_L12	coord: 101..167 score: 1.2
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	GENE3D	G3DSA:3.30.1390.10		coord: 95..167 score: 7.1
IPR014719	Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like	unknown	SSF54736	ClpS-like	coord: 97..167 score: 4.53
None	No IPR available	PANTHER	PTHR24089	FAMILY NOT NAMED	coord: 35..168 score: 3.0
None	No IPR available	PANTHER	PTHR24089:SF375	SUBFAMILY NOT NAMED	coord: 35..168 score: 3.0