Cla97C08G148870 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C08G148870
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Unknown protein
Location	Cla97Chr08 : 17143999 .. 17144226 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCATTTCAGAGTGTTGCCGGACGTCAATCGGGTCTCCGATCTTCCTCCGAACGAGCCGGCGATTGGGTACAGAGTAGGCGGTGGAGAAATGAAATCCGTGATTCCCCGGAAGAGGAAGCTGGTGAAGACGATGATTTACCATTGTATTAAGGACTTCCTTATATCGCTCCTTCGTCCGTCGCCGGAGCTCCACGACCGCCGCCAACCCATTGCCGAAGATTTGTAA

mRNA sequence

ATGCATTTCAGAGTGTTGCCGGACGTCAATCGGGTCTCCGATCTTCCTCCGAACGAGCCGGCGATTGGGTACAGAGTAGGCGGTGGAGAAATGAAATCCGTGATTCCCCGGAAGAGGAAGCTGGTGAAGACGATGATTTACCATTGTATTAAGGACTTCCTTATATCGCTCCTTCGTCCGTCGCCGGAGCTCCACGACCGCCGCCAACCCATTGCCGAAGATTTGTAA

Coding sequence (CDS)

ATGCATTTCAGAGTGTTGCCGGACGTCAATCGGGTCTCCGATCTTCCTCCGAACGAGCCGGCGATTGGGTACAGAGTAGGCGGTGGAGAAATGAAATCCGTGATTCCCCGGAAGAGGAAGCTGGTGAAGACGATGATTTACCATTGTATTAAGGACTTCCTTATATCGCTCCTTCGTCCGTCGCCGGAGCTCCACGACCGCCGCCAACCCATTGCCGAAGATTTGTAA

Protein sequence

MHFRVLPDVNRVSDLPPNEPAIGYRVGGGEMKSVIPRKRKLVKTMIYHCIKDFLISLLRPSPELHDRRQPIAEDL

Homology

[Close]

BLAST of Cla97C08G148870 vs. NCBI nr
Match: KGN47678.1 (hypothetical protein Csa_6G374710 [Cucumis sativus])

HSP 1 Score: 100.9 bits (250), Expect = 1.9e-18
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MHFRVLPDVNRVSDLPPNEPAIGY-------RVGGGEMKSVIPRKRKLVKTMIYHCIKDF 60
          MH  +LP  NRVSDLPP++P   +       RVGG ++KSVIP++RKLVKTMIYH +KDF
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60

Query: 61 LISLLRPSPELHDRRQPIAEDL 76
          LISL RPS ++H+R +PI++DL
Sbjct: 61 LISLFRPSSDIHNRPKPISKDL 82

[Close]

BLAST of Cla97C08G148870 vs. NCBI nr
Match: XP_022141661.1 (uncharacterized protein LOC111011963 [Momordica charantia])

HSP 1 Score: 60.1 bits (144), Expect = 3.8e-06
Identity = 38/82 (46.34%), Postives = 48/82 (58.54%), Query Frame = 0


Query: 1  MHFRVLPDVNRV----------SDLPPNEP------------AIGYRVGGGEMKSVIPRK 60
          M  RV P+ +RV          ++L PN P            AIG R  GG++KSVIP++
Sbjct: 1  MQIRVWPENDRVLLKPEPIADGTELAPNNPVMISEMAVTANGAIGSR-AGGKVKSVIPKR 60

[Close]

BLAST of Cla97C08G148870 vs. NCBI nr
Match: KGN47679.1 (hypothetical protein Csa_6G374720 [Cucumis sativus])

HSP 1 Score: 58.2 bits (139), Expect = 1.4e-05
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1  MHFRVLPDVNRVSDLPPNEPAIGYRVGGGEMKSVIPRKRKLVKTMIYHCIKDFLISLLRP 60
          M FRV    N+V         I Y  G G +KSVIP+KR+LVK M+Y CIK+++ SL  P
Sbjct: 1  MKFRVFSGNNQVIPAKSETATIVYG-GAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCP 60

Query: 61 SPELHDRRQP 71
          +P+L     P
Sbjct: 61 TPKLGGSTNP 69

[Close]

BLAST of Cla97C08G148870 vs. NCBI nr
Match: KGN47677.1 (hypothetical protein Csa_6G374700 [Cucumis sativus])

HSP 1 Score: 52.8 bits (125), Expect = 6.0e-04
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 21 AIGYRVGGGEMKSVIPRKRKLVKTMIYHCIKDFLIS 57
          A+GY+ GG +MKSVIP KRKLVK M+Y  IK+F+IS
Sbjct: 50 AMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVIS 85

[Close]

BLAST of Cla97C08G148870 vs. TrEMBL
Match: tr|A0A0A0KDQ7|A0A0A0KDQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.3e-18
Identity = 48/82 (58.54%), Postives = 63/82 (76.83%), Query Frame = 0


Query: 1  MHFRVLPDVNRVSDLPPNEPAIGY-------RVGGGEMKSVIPRKRKLVKTMIYHCIKDF 60
          MH  +LP  NRVSDLPP++P   +       RVGG ++KSVIP++RKLVKTMIYH +KDF
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60

Query: 61 LISLLRPSPELHDRRQPIAEDL 76
          LISL RPS ++H+R +PI++DL
Sbjct: 61 LISLFRPSSDIHNRPKPISKDL 82

[Close]

BLAST of Cla97C08G148870 vs. TrEMBL
Match: tr|A0A0A0KFQ1|A0A0A0KFQ1_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 9.5e-06
Identity = 31/70 (44.29%), Postives = 41/70 (58.57%), Query Frame = 0


Query: 1  MHFRVLPDVNRVSDLPPNEPAIGYRVGGGEMKSVIPRKRKLVKTMIYHCIKDFLISLLRP 60
          M FRV    N+V         I Y  G G +KSVIP+KR+LVK M+Y CIK+++ SL  P
Sbjct: 1  MKFRVFSGNNQVIPAKSETATIVYG-GAGNVKSVIPKKRRLVKRMMYDCIKEWIKSLFCP 60

Query: 61 SPELHDRRQP 71
          +P+L     P
Sbjct: 61 TPKLGGSTNP 69

[Close]

BLAST of Cla97C08G148870 vs. TrEMBL
Match: tr|A0A0A0KH01|A0A0A0KH01_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.0e-04
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 0


Query: 21 AIGYRVGGGEMKSVIPRKRKLVKTMIYHCIKDFLIS 57
          A+GY+ GG +MKSVIP KRKLVK M+Y  IK+F+IS
Sbjct: 50 AMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVIS 85

The following BLAST results are available for this feature:

BLAST of Cla97C08G148870 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN47678.1	1.9e-18	58.54	hypothetical protein Csa_6G374710 [Cucumis sativus]	[more]
XP_022141661.1	3.8e-06	46.34	uncharacterized protein LOC111011963 [Momordica charantia]	[more]
KGN47679.1	1.4e-05	44.29	hypothetical protein Csa_6G374720 [Cucumis sativus]	[more]
KGN47677.1	6.0e-04	66.67	hypothetical protein Csa_6G374700 [Cucumis sativus]	[more]

BLAST of Cla97C08G148870 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0KDQ7\|A0A0A0KDQ7_CUCSA	1.3e-18	58.54	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1	[more]
tr\|A0A0A0KFQ1\|A0A0A0KFQ1_CUCSA	9.5e-06	44.29	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374720 PE=4 SV=1	[more]
tr\|A0A0A0KH01\|A0A0A0KH01_CUCSA	4.0e-04	66.67	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1	[more]

BLAST of Cla97C08G148870 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Cla97C08G148870 vs. TAIR10


Match Name	E-value	Identity	Description

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C08G148870.1	Cla97C08G148870.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C08G148870	Cla013898	Watermelon (97103) v1	wmwmbB100
Cla97C08G148870	Csa6G374710	Cucumber (Chinese Long) v2	cuwmbB497
Cla97C08G148870	ClCG08G006110	Watermelon (Charleston Gray)	wcgwmbB336
Cla97C08G148870	CSPI06G19930	Wild cucumber (PI 183967)	cpiwmbB523
Cla97C08G148870	CmaCh04G023950	Cucurbita maxima (Rimu)	cmawmbB786
Cla97C08G148870	CmoCh04G025110	Cucurbita moschata (Rifu)	cmowmbB760
Cla97C08G148870	Lsi08G004770	Bottle gourd (USVL1VR-Ls)	lsiwmbB445
Cla97C08G148870	CsaV3_6G033960	Cucumber (Chinese Long) v3	cucwmbB516
Cla97C08G148870	Bhi04G001467	Wax gourd	wgowmbB325

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C08G148870	Silver-seed gourd	carwmbB0063
Cla97C08G148870	Silver-seed gourd	carwmbB0862
Cla97C08G148870	Cucurbita maxima (Rimu)	cmawmbB319
Cla97C08G148870	Cucurbita moschata (Rifu)	cmowmbB026
Cla97C08G148870	Cucurbita moschata (Rifu)	cmowmbB302
Cla97C08G148870	Melon (DHL92) v3.6.1	medwmbB294
Cla97C08G148870	Melon (DHL92) v3.5.1	mewmbB308