CsaV3_6G033960 (gene) Cucumber (Chinese Long) v3

Overview
NameCsaV3_6G033960
Typegene
OrganismCucumis sativus (Cucumber (Chinese Long) v3)
DescriptionUnknown protein
Locationchr6 : 18759785 .. 18760029 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTGCACACTCCTGCCCCACCACAATCGCGTCTCCGATCTTCCTCCAGACAAGCCGGTGGCGGCGTTCAGAAGCCCTGTGATTCGGGACAGAGTCGGCGGTAGGAAAATAAAATCTGTGATTCCCAAGCAGAGGAAGCTGGTGAAGACCATGATTTACCACTCCCTTAAGGACTTCCTTATTTCCCTCTTTCGTCCCTCCTCGGACATCCACAACCGCCCCAAACCCATTTCTAAAGATTT

mRNA sequence

ATGCATTGCACACTCCTGCCCCACCACAATCGCGTCTCCGATCTTCCTCCAGACAAGCCGGTGGCGGCGTTCAGAAGCCCTGTGATTCGGGACAGAGTCGGCGGTAGGAAAATAAAATCTGTGATTCCCAAGCAGAGGAAGCTGGTGAAGACCATGATTTACCACTCCCTTAAGGACTTCCTTATTTCCCTCTTTCGTCCCTCCTCGGACATCCACAACCGCCCCAAACCCATTTCTAAAGATTT

Coding sequence (CDS)

ATGCATTGCACACTCCTGCCCCACCACAATCGCGTCTCCGATCTTCCTCCAGACAAGCCGGTGGCGGCGTTCAGAAGCCCTGTGATTCGGGACAGAGTCGGCGGTAGGAAAATAAAATCTGTGATTCCCAAGCAGAGGAAGCTGGTGAAGACCATGATTTACCACTCCCTTAAGGACTTCCTTATTTCCCTCTTTCGTCCCTCCTCGGACATCCACAACCGCCCCAAACCCATTTCTAAAGATTT

Protein sequence

MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPISKDX
Homology
[Close]
BLAST of CsaV3_6G033960 vs. NCBI nr
Match: KGN47678.1 (hypothetical protein Csa_6G374710 [Cucumis sativus])

HSP 1 Score: 169.1 bits (427), Expect = 6.3e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60
          MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60

Query: 61 LISLFRPSSDIHNRPKPISKD 82
          LISLFRPSSDIHNRPKPISKD
Sbjct: 61 LISLFRPSSDIHNRPKPISKD 81

[Close]
BLAST of CsaV3_6G033960 vs. NCBI nr
Match: XP_022141661.1 (uncharacterized protein LOC111011963 [Momordica charantia])

HSP 1 Score: 58.5 bits (140), Expect = 1.2e-05
Identity = 33/60 (55.00%), Postives = 42/60 (70.00%), Query Frame = 0 

Query: 13 SDLPPDKPV-----AAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRP 68
          ++L P+ PV     A   +  I  R GG K+KSVIPK+R LVKTMIY+ +KDF+ISLFRP
Sbjct: 23 TELAPNNPVMISEMAVTANGAIGSRAGG-KVKSVIPKRRILVKTMIYNFIKDFIISLFRP 81

[Close]
BLAST of CsaV3_6G033960 vs. TrEMBL
Match: tr|A0A0A0KDQ7|A0A0A0KDQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 4.2e-39
Identity = 81/81 (100.00%), Postives = 81/81 (100.00%), Query Frame = 0 

Query: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60
          MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPVAAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYHSLKDF 60

Query: 61 LISLFRPSSDIHNRPKPISKD 82
          LISLFRPSSDIHNRPKPISKD
Sbjct: 61 LISLFRPSSDIHNRPKPISKD 81

The following BLAST results are available for this feature:
BLAST of CsaV3_6G033960 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47678.16.3e-39100.00hypothetical protein Csa_6G374710 [Cucumis sativus][more]
XP_022141661.11.2e-0555.00uncharacterized protein LOC111011963 [Momordica charantia][more]
BLAST of CsaV3_6G033960 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G033960 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CsaV3_6G033960 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KDQ7|A0A0A0KDQ7_CUCSA4.2e-39100.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CsaV3_6G033960.1CsaV3_6G033960.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CsaV3_6G033960CSPI06G19930Wild cucumber (PI 183967)cpicucB363
CsaV3_6G033960CmaCh04G023950Cucurbita maxima (Rimu)cmacucB0908
CsaV3_6G033960CmoCh04G025110Cucurbita moschata (Rifu)cmocucB0900
CsaV3_6G033960Cp4.1LG01g20820Cucurbita pepo (Zucchini)cpecucB0570
CsaV3_6G033960Cla013899Watermelon (97103) v1cucwmB493
CsaV3_6G033960ClCG08G006100Watermelon (Charleston Gray)cucwcgB526
CsaV3_6G033960Cla97C08G148870Watermelon (97103) v2cucwmbB516
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CsaV3_6G033960Wax gourdcucwgoB591
CsaV3_6G033960Cucumber (Gy14) v2cgybcucB298
CsaV3_6G033960Cucumber (Gy14) v1cgycucB508
CsaV3_6G033960Cucurbita pepo (Zucchini)cpecucB0239
CsaV3_6G033960Bottle gourd (USVL1VR-Ls)cuclsiB511
CsaV3_6G033960Melon (DHL92) v3.6.1cucmedB467