CmaCh04G023950 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh04G023950
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Unknown protein
Location	Cma_Chr04 : 16589337 .. 16590090 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATTCAGAGTCTCGCTGGACCACAATCGGGTCATACCCGACCCACATCTGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTGATCGGAAACAAAGACGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCCCAGCGATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGTAATTCCGAAGGAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCTTTAAGAACTTCCTCTTATCGCTGTTCCATCGCCCGCCGGAAACCCAGAACCGCCCCAAACCCATTACCGATGACCAGTAAAAATCTTGACACTTACACGTTTGTATTCGGATTTTTATCATAATCTTCTTATTGTTCACGTTTTTCTCTTTTCTGAGTGAGCCTCTGTGTCCTCCTCTGTTTTTCTCTATCATAAAACAGAGGATTTTATAATGGCTTGTAGTGTAATCCACTTGTGTTTTGTTCTTATTTCTATGTCGTTTCGAAATTCTCTTGGTCGTGTTTTTTAATAAAAGAACTGTCTGATTCCGGTTGGTATTGGCCGTTGTTCCATTGAATCGGAAACAGAGACTCCGCAGATCCGCCGGAGAAGAAGGTTCTCGCCGGCGTCTGA

mRNA sequence

ATGCGATTCAGAGTCTCGCTGGACCACAATCGGGTCATACCCGACCCACATCTGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTGATCGGAAACAAAGACGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCCCAGCGATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGTAATTCCGAAGGAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCTTTAAGAACTTCCTCTTATCGCTGTTCCATCGCCCGCCGGAAACCCAGAACCGCCCCAAACCCATTACCGATGACCAAGACTCCGCAGATCCGCCGGAGAAGAAGGTTCTCGCCGGCGTCTGA

Coding sequence (CDS)

ATGCGATTCAGAGTCTCGCTGGACCACAATCGGGTCATACCCGACCCACATCTGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCACCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCGAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTGATCGGAAACAAAGACGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCCCAGCGATCCCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCAATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGTAATTCCGAAGGAGAGGAAGTTAGTGAAGACGATGATGTACCACTGCTTTAAGAACTTCCTCTTATCGCTGTTCCATCGCCCGCCGGAAACCCAGAACCGCCCCAAACCCATTACCGATGACCAAGACTCCGCAGATCCGCCGGAGAAGAAGGTTCTCGCCGGCGTCTGA

Protein sequence

MRFRVSLDHNRVIPDPHLTPHHPPSLNAHHLAPIDPPKSVLPLIPANPETAVMSTRPVIGNKDGDGKAKSVLPLIPAIPETAVTSTGTLTNSHGYRVGIGKGKSVIPKERKLVKTMMYHCFKNFLLSLFHRPPETQNRPKPITDDQDSADPPEKKVLAGV

Homology

[Close]

BLAST of CmaCh04G023950 vs. TrEMBL
Match: A0A0A0KDQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 65.5 bits (158), Expect = 6.9e-08
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 96  RVGIGKGKSVIPKERKLVKTMMYHCFKNFLLSLFHRPPETQNRPKPITDD 146
           RVG  K KSVIPK+RKLVKTM+YH  K+FL+SLF    +  NRPKPI+ D
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPISKD 81

[Close]

BLAST of CmaCh04G023950 vs. NCBI nr
Match: gi|700192474|gb|KGN47678.1| (hypothetical protein Csa_6G374710 [Cucumis sativus])

HSP 1 Score: 65.5 bits (158), Expect = 9.9e-08
Identity = 32/50 (64.00%), Postives = 38/50 (76.00%), Query Frame = 1


Query: 96  RVGIGKGKSVIPKERKLVKTMMYHCFKNFLLSLFHRPPETQNRPKPITDD 146
           RVG  K KSVIPK+RKLVKTM+YH  K+FL+SLF    +  NRPKPI+ D
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPISKD 81

The following BLAST results are available for this feature:

BLAST of CmaCh04G023950 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh04G023950 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDQ7_CUCSA	6.9e-08	64.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374710 PE=4 SV=1	[more]

BLAST of CmaCh04G023950 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh04G023950 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192474\|gb\|KGN47678.1\|	9.9e-08	64.00	hypothetical protein Csa_6G374710 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh04G023950.1	CmaCh04G023950.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh04G023950	Cla013898	Watermelon (97103) v1	cmawmB666
CmaCh04G023950	Csa6G374710	Cucumber (Chinese Long) v2	cmacuB769
CmaCh04G023950	ClCG08G006130	Watermelon (Charleston Gray)	cmawcgB678
CmaCh04G023950	CSPI06G19930	Wild cucumber (PI 183967)	cmacpiB779
CmaCh04G023950	CmoCh04G025110	Cucurbita moschata (Rifu)	cmacmoB729
CmaCh04G023950	Lsi08G004770	Bottle gourd (USVL1VR-Ls)	cmalsiB703
CmaCh04G023950	Cp4.1LG01g20820	Cucurbita pepo (Zucchini)	cmacpeB721
CmaCh04G023950	CsaV3_6G033960	Cucumber (Chinese Long) v3	cmacucB0908
CmaCh04G023950	Cla97C08G148870	Watermelon (97103) v2	cmawmbB786
CmaCh04G023950	Bhi04G001467	Wax gourd	cmawgoB0869

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh04G023950	Melon (DHL92) v3.6.1	cmamedB763
CmaCh04G023950	Silver-seed gourd	carcmaB0088
CmaCh04G023950	Silver-seed gourd	carcmaB1150
CmaCh04G023950	Cucurbita maxima (Rimu)	cmacmaB325
CmaCh04G023950	Cucurbita moschata (Rifu)	cmacmoB675
CmaCh04G023950	Cucurbita moschata (Rifu)	cmacmoB693
CmaCh04G023950	Melon (DHL92) v3.5.1	cmameB680
CmaCh04G023950	Cucurbita pepo (Zucchini)	cmacpeB705
CmaCh04G023950	Cucurbita pepo (Zucchini)	cmacpeB754