CmoCh04G025110 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh04G025110
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr04 : 18503854 .. 18504285 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCATCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCAAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCGCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCGATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGAAATTTCGAAGAGGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCAAATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACGGCCCCAAACCCATTGCCGATTACCAGTAA

mRNA sequence

ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCATCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCAAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCGCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCGATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGAAATTTCGAAGAGGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCAAATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACGGCCCCAAACCCATTGCCGATTACCAGTAA

Coding sequence (CDS)

ATGCGATTCAGAGTCTCGCCGGACCACAATCGGGTCATACCCGACCCACATCCGACCCCCCACCACCCGCCCTCCCTCAATGCCCACCATCTTGCTCCAATCGATCCGCCGAAATCTGTGCTTCCGTTGATTCCGGCAAACCCAGAGACGGCGGTGATGTCGACCAGGCCTGTAATCGGAAACAAAGCCGGCGACGGAAAAGCGAAATCTGTGCTTCCGTTGATCGCAGAGACGGCGGTGACGTCGACGGGGACGTTGACCGATTCTCACGGGTACAGAGTCGGCATCGGAAAAGGGAAATCTGAAATTTCGAAGAGGAGGAAGTTAGTGAAGACGATGATGTACCACTGCATTAAGAACTTCCTCAAATCGCTGTTCCGTCGCCCGCCGGAAACCCACAACGGCCCCAAACCCATTGCCGATTACCAGTAA

Homology

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BLAST of CmoCh04G025110 vs. TrEMBL
Match: A0A0A0KDQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.7e-06
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 93  RVGIGKGKSEISKRRKLVKTMMYHCIKNFLKSLFRRPPETHNGPKPIA 141
           RVG  K KS I K+RKLVKTM+YH +K+FL SLFR   + HN PKPI+
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPIS 79

[Close]

BLAST of CmoCh04G025110 vs. NCBI nr
Match: gi|700192474|gb|KGN47678.1| (hypothetical protein Csa_6G374710 [Cucumis sativus])

HSP 1 Score: 58.9 bits (141), Expect = 8.2e-06
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1


Query: 93  RVGIGKGKSEISKRRKLVKTMMYHCIKNFLKSLFRRPPETHNGPKPIA 141
           RVG  K KS I K+RKLVKTM+YH +K+FL SLFR   + HN PKPI+
Sbjct: 32  RVGGRKIKSVIPKQRKLVKTMIYHSLKDFLISLFRPSSDIHNRPKPIS 79

The following BLAST results are available for this feature:

BLAST of CmoCh04G025110 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh04G025110 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KDQ7_CUCSA	5.7e-06	62.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374710 PE=4 SV=1	[more]

BLAST of CmoCh04G025110 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh04G025110 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192474\|gb\|KGN47678.1\|	8.2e-06	62.50	hypothetical protein Csa_6G374710 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh04G025110.1	CmoCh04G025110.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh04G025110	CmaCh04G023950	Cucurbita maxima (Rimu)	cmacmoB729
CmoCh04G025110	Cla013898	Watermelon (97103) v1	cmowmB661
CmoCh04G025110	Lsi08G004770	Bottle gourd (USVL1VR-Ls)	cmolsiB697
CmoCh04G025110	Cp4.1LG01g20820	Cucurbita pepo (Zucchini)	cmocpeB673
CmoCh04G025110	CsaV3_6G033960	Cucumber (Chinese Long) v3	cmocucB0900
CmoCh04G025110	Cla97C08G148870	Watermelon (97103) v2	cmowmbB760
CmoCh04G025110	Bhi04G001467	Wax gourd	cmowgoB0865

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh04G025110	Cucurbita moschata (Rifu)	cmocmoB029
CmoCh04G025110	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh04G025110	Cucurbita moschata (Rifu)	cmocmoB367
CmoCh04G025110	Cucurbita maxima (Rimu)	cmacmoB309
CmoCh04G025110	Wild cucumber (PI 183967)	cmocpiB770
CmoCh04G025110	Cucumber (Chinese Long) v2	cmocuB761
CmoCh04G025110	Melon (DHL92) v3.5.1	cmomeB672
CmoCh04G025110	Watermelon (Charleston Gray)	cmowcgB680
CmoCh04G025110	Cucurbita pepo (Zucchini)	cmocpeB657
CmoCh04G025110	Cucurbita pepo (Zucchini)	cmocpeB708
CmoCh04G025110	Melon (DHL92) v3.6.1	cmomedB760
CmoCh04G025110	Silver-seed gourd	carcmoB0094
CmoCh04G025110	Silver-seed gourd	carcmoB1121