Lsi08G004770 (gene) Bottle gourd (USVL1VR-Ls)

Overview
NameLsi08G004770
Typegene
OrganismLagenaria siceraria (Bottle gourd (USVL1VR-Ls))
DescriptionUnknown protein
Locationchr08 : 12583980 .. 12584234 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTCAGAGTGTTGTCGGACGTCAATCCGGTCTCCGATCTTCCTCCAAACAAGCCGGTGCTGGTGCCGGCGGCGGCGGCGTTGAACAGGCCGGCGATTGGGTACAGAGTGGGCGGTGGAAAAATGAAATCTGTGATTCCGAAGAAGAGGAAGCTAGTGAAGACGATGATTTACCACTGTATTAAGGACTTCCTTATATCGCTCTTTCGTCCGTCGCCGGAGATCGAACGACCGCCGCCAACCCATTTCTGA

mRNA sequence

ATGCATTTCAGAGTGTTGTCGGACGTCAATCCGGTCTCCGATCTTCCTCCAAACAAGCCGGTGCTGGTGCCGGCGGCGGCGGCGTTGAACAGGCCGGCGATTGGGTACAGAGTGGGCGGTGGAAAAATGAAATCTGTGATTCCGAAGAAGAGGAAGCTAGTGAAGACGATGATTTACCACTGTATTAAGGACTTCCTTATATCGCTCTTTCGTCCGTCGCCGGAGATCGAACGACCGCCGCCAACCCATTTCTGA

Coding sequence (CDS)

ATGCATTTCAGAGTGTTGTCGGACGTCAATCCGGTCTCCGATCTTCCTCCAAACAAGCCGGTGCTGGTGCCGGCGGCGGCGGCGTTGAACAGGCCGGCGATTGGGTACAGAGTGGGCGGTGGAAAAATGAAATCTGTGATTCCGAAGAAGAGGAAGCTAGTGAAGACGATGATTTACCACTGTATTAAGGACTTCCTTATATCGCTCTTTCGTCCGTCGCCGGAGATCGAACGACCGCCGCCAACCCATTTCTGA

Protein sequence

MHFRVLSDVNPVSDLPPNKPVLVPAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMIYHCIKDFLISLFRPSPEIERPPPTHF
Homology
[Close]
BLAST of Lsi08G004770 vs. TrEMBL
Match: A0A0A0KDQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 5.6e-17
Identity = 53/82 (64.63%), Postives = 59/82 (71.95%), Query Frame = 1 

Query: 1  MHFRVLSDVNPVSDLPPNKPVLVPAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMIYH 60
          MH  +L   N VSDLPP+KPV     AA   P I  RVGG K+KSVIPK+RKLVKTMIYH
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPV-----AAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYH 60

Query: 61 CIKDFLISLFRPSPEI-ERPPP 82
           +KDFLISLFRPS +I  RP P
Sbjct: 61 SLKDFLISLFRPSSDIHNRPKP 77

[Close]
BLAST of Lsi08G004770 vs. NCBI nr
Match: gi|700192474|gb|KGN47678.1| (hypothetical protein Csa_6G374710 [Cucumis sativus])

HSP 1 Score: 94.7 bits (234), Expect = 8.0e-17
Identity = 53/82 (64.63%), Postives = 59/82 (71.95%), Query Frame = 1 

Query: 1  MHFRVLSDVNPVSDLPPNKPVLVPAAAALNRPAIGYRVGGGKMKSVIPKKRKLVKTMIYH 60
          MH  +L   N VSDLPP+KPV     AA   P I  RVGG K+KSVIPK+RKLVKTMIYH
Sbjct: 1  MHCTLLPHHNRVSDLPPDKPV-----AAFRSPVIRDRVGGRKIKSVIPKQRKLVKTMIYH 60

Query: 61 CIKDFLISLFRPSPEI-ERPPP 82
           +KDFLISLFRPS +I  RP P
Sbjct: 61 SLKDFLISLFRPSSDIHNRPKP 77

The following BLAST results are available for this feature:
BLAST of Lsi08G004770 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Lsi08G004770 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KDQ7_CUCSA5.6e-1764.63Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374710 PE=4 SV=1[more]
BLAST of Lsi08G004770 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Lsi08G004770 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192474|gb|KGN47678.1|8.0e-1764.63hypothetical protein Csa_6G374710 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Lsi08G004770.1Lsi08G004770.1mRNA