ClCG08G006110 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G006110
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 18403504 .. 18408146 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATTTCAGAGTGTTGCCGGACGTCAATCGGGTCTCCGATCTTCCTCCGAACGAGCCGGCGATTGGGTACAGAGTAGGCGGTGGAGAAATGAAATCCGTGATTCCCCGGAAGAGGAAGCTGGTGAAGACGATGATTTACCATTGTATTAAGGACTTCCTTATATCGCTCCTTCGTCCGTCGCCGGAGCTCCACGACCGCCGCCAACCCATTGCCGAAGATTTGTAATAATCATCATTCTTACATGTTTGTGTTAAGTTAAGCCTTTCATTTTCTTCTTCTTCTTCTTCTGTTTTTTTTTTTTTTTTTTTTTGGTGGGTGTGCCTTCCTCTGTTTCATCTTGCAGCGAAAACAGAGGATTTTTATTTTCGGCTTGTTCTTGACAAATTACAAACATGTAATGAAAGTTGTAGATTTTGTTCTTATTTCTGTGTCAATTCCAAATTGTGTTGGTTATTTGCTAAATTAGAAACTGGGTGATTCGGGTTGATTTTGGGAGTTGTTCCATCCAATTGAAAACAGAGACTCTACAAATGCGCCGGAAAAACACTTCCCACGGCCACGGCACCCGATCATCGGTCTTCATCTCGAATAATGTTAAATTACCATTTTAGACCATAAATTTTCACTTTTCTCTTTCTTGGGTATTGGCTTAAACTTTTAAGGAGTGTTAGGTAAATTTTTCAATTTTGTATTTATTACCTCTATGTCAAATTAAATAAATATAAATTTTTCTTAAAAATAATTAATGTACTAGAATATAAATTTAAGTCTATTTTTCAAGAAAGTCCAATTAATTTCATGTTGATTCATTCGTGAATTAAAGAAATGAAAAAGTTTGAAAAGTTTAAAAACTAAATATTAATATTTTAACAAATAAAATAATTCCAAGTTTAATAACTTATTGGTTTTTTGTTTTTAATTTGACTATTATGCATATTTGTTCACAATTTTCTTACAATTTTTTTTAATTTGAAGATTCTTAGCAAAATTACAAGATTTTTAAACATTTTTTTTAGTGGGGTTGGATTTTTATAACATTCTGAAAAATATGAAAAAGTATTAGTAGGTAAAAGTATTGCTAATTGAAATTTAGGTAGATTATAAGAAGTATTATACGTGAATAACAATGTTATTGACAAGAGTAAAAATAAATTAAACAGAAGTATAAAAGAGAGATAAACACATAAAAATGGTAACCCAGTTCGGTGTAATCAACGAATGAAAAGAGTTTCACTAGTTATAACCAATGTTTACAATATACTTGTTTTCACACCTACATTTGAGAGGCTCCCCTAAATATTGTGCTCCTTATGGAAAAGTTAGCAAATTGGGTTCCCCTCAATCTGATGCTACTCAGCAATAACTCAATCTCTTTTCACTTTATAGTTGAATTACCATCCAACTAAGAAGTAGTGCATCATACCAAATCTGATGTTAGGAACAATAAATATATCGTCAACAATGCAGGATCTAACTCCGACTAGCAAACTTGAGCCAATCACCACATCTCTCAAAACTCTTTAGTGCTCACTTTCATTCACACAAAACAGCTTAACCTCGAAAGGCACAGCACGAGGAAAATATATATATATATATAACACAAATGAAAAATATCCATCATAACCATAGTAGGAGATTGGGACCAAATAAAGGCCAAGCCTAAAATACGCACAACTTAAAAAGGAAATAATCTTCCGCAGATACGACATAAACAAAGTCAGAGACAAGCCAAGAGACAATTGTGATAAAAGAAAATATTAACAGCCAACACCATTTTAACACTTTTAAATTTATTTTTCAAAAACAAAAAACTTACAAAAGTGAAACATTAGATATTTAATAGGTTAAATTGCAAATTTAGTCCTTATAATTTAGAAAGAGTTAGAGTTTAGTCCTTATGATTTGATTAAATGTTGAAATTTAATCCTTATGCTTTGATAAAATTCGTTATAATTTCCTTCAAACAATAAGAATTAAACGTTGAAATTTATTCTTTATACTTTGATAAAATTCATTCTAATTTCCTTCACACAATAAGAATTAAATGTTGAAATTAAGTTTTTATATTTTGATAAAATTCATTCTAATTTGCTTCACACAATAAGAATTAAATGTTGAAATTAAGTTTTTATATTTTGATAAAAATTCATTCTAATTTCCTTCAAAACAATAAGAAACAAATTCTATTTTAAGACTAAAGAGACTAAATTATAACTTTTTCATGAGACCAAATTCATTATTTAACCTATTCCATACAAATTGAGATGAGTTTAATTTTTTTTCCCTTGCTTTTTTGAAAAAGAATTAGAGGGTATATCAGTAATTGACGGCCGAGATTAGCCAATATGGAATAGGGAGGACAAGTGTAAGGAACTGAAACCACCTGTCCTTACAAGGAGGAAAAATAATAATAATATCATTATACCTTTTTAATTTTAAATTACAACTTTTGTATTTGTGTATTTTAAATGGCCAACAAAAAACACTTTAGATGCCAAATCAATCTTTAACATAAAATAAAAACAATTAATTTATAATAACTAAATTTATTAACATGACCATAACCAACGCATGATTGTAAGACTTTAGGTACCAAATCAATCTTTAATATATATTTATTTTGAACCGTTTAAAGTTTAAAATTAATTTGATGGTTTGAAAGTTTCTTCAAAATTTATCCTAATTATATTTAAATGAATAGAAATGTTAAAATTATTTAATTAAGTTTTTAGAGATATATATATAAATAGGAGGATTTATATATAAATCTAAAAATCTGATCATAATATCAAGGAAGTAAAAGAGAATTATTATCCAAATGGCACCCTAAAGAATTCATTTTTTAAGTCTCTAAATTTTTTATTATTATGTCCAAATTCTAAATAAATCAATATGTATATTTAGTAAAACTAGAAACTTATTAGAGATAAAATTAAAATTTAAAAAATTGATTAAACACTTTTAAAAATTTAGTATCATATTAAATACAATGTTAAAAAGGACAGAATCTATAACCAAACACAAAATTAAAAGAGAAATTATGATTTAATCTAAAAAAAAGTAAAAGAAGAAAAGGGTAGTGTCCATAACTTAACTAAAATTTAAAACAGTTAATTGATTTGTTTTCTTTATAATATGTTATTACTACATCATTGTCGACATATGTAATCATAAATGTTGAGATTTTCCTGGTATATGTAACTTTGACAAATTGCTTTTTATTTTTAGCAAAAATCACATTGATTGTTATTTTTTATTTATTTATTTTTTTTTTGAAAAAAAAAAGCTAAAAGAACCTAGTATTTAGCTTTAATTATTCATAAAAATCATAAATTTGAGTTAGTAGGAAACAAAGCAGATTAAAAGACATTGTTGACAATATTATGAGTGTAGTTGAAAAGGAAATTAATTTTTTACTCTTGTTACTTGATTCTTTACGACTTATTTAATGATCATAAAAAAAATATTTAATTTAATTTGGAGTATCAAAAGTAAGATTATTTTTTAGATTTTTTTTTTTAAAAAAAATATTAATCAACAACAAAAAGAAAATCAAATTTAATCATTGGTAAAATAAATGATTAATATTTGGAATAGGAATCATGTAATTAACCAAAGACATAAAATTGAATAATGTTCACTTTGTATTCAACTTAGAGGAGCGATGCAAAACTCAGAAGCCTGAGTCAAGGCAACTAGAAATAAATTTAATTTTGATTTCGTGCTCATTTCCAAATTTCTGCTTTGTTATTCCCATCATCCGATAACCACAGGATGATCCACAAGAAAGGTGGCAGGATTCGAACCTATGGCCGGCCCGCCCATGACCAGCTGGGTTGGGTGGCCGGGTTAGCACCCCTCGTCGCCTCCGTACCCGAAACAGATGCGCTGCGCTACCCAGCGCGTAACCTTTCGGGGTTTGGCTTCTGGTTATGCCATTACCAATCGCGGGTAACCCCCGGGCCCTTGACCTAATAAGAACCATTATCCTTATGACCAAACAAGGACCAGCTTACTTACTTCTCGAGCGATAGTTCCACGATCCCGACCAGCAACTTGTTGGGAGTAGGGGCATCCAAGCTTGCCCAACCTATACAAGGGGCTTGGAGATCGAGGGTTTTCTGGGGGAGATACAGTTTTCAGGTTGGATTTGAAAAAGAAAATAGTTTAAAAAAAAAAAAAAAAGGAAATTTCCTAGAAACTTCCACATCGGCAATTCACAACACTTATTTCCTATAAGAACACGAACCCCTTGTTAATGAACTAAAAATTTTAAAAACATCTTCAATTAGCTAAAATTCGCCGACAAAATTCCCTCAATTCCGATTCTGGCTCCCACCGCGGTGGACGTGCCGGAGGTGGGAGGTAAAAAGTTTCCGGTGAACTTAATGACCCAATCAGAACCGGCCGTGAAGGGGAGACCCGAAGGAGAGTCGATGGATGTGGTGGTGGCAGAAGCGTCGAATCGGGCGGTTCCAATGGCTGTCGGGTACAAAGTCGGCGGTGCAAAAATGGGATCTGTGATTCCGATGAAGAGGAAGTTAGTGAAGACAATGATGTATCACTCCATAAAGGATTTTGTTATATCATTCTTCCGTACGCCGCCGTCCGCCGGCGCCGGTCCCGGAGGTCCACCGTAA

mRNA sequence

ATGCATTTCAGAGTGTTGCCGGACGTCAATCGGGTCTCCGATCTTCCTCCGAACGAGCCGGCGATTGGGTACAGAGTAGGCGGACTTCCTTATATCGCTCCTTCGTCCGTCGCCGGAGCTCCACGACCGCCGCCAACCCATTGCCGAAGATTTCTAAAATTCGCCGACAAAATTCCCTCAATTCCGATTCTGGCTCCCACCGCGGTGGACGTGCCGGAGGTGGGAGGTAAAAAGTTTCCGGTGAACTTAATGACCCAATCAGAACCGGCCGTGAAGGGGAGACCCGAAGGAGAGTCGATGGATGTGGTGGTGGCAGAAGCGTCGAATCGGGCGGTTCCAATGGCTGTCGGGTACAAAGTCGGCGGTGCAAAAATGGGATCTGTGATTCCGATGAAGAGGAAGTTAGTGAAGACAATGATGTATCACTCCATAAAGGATTTTGTTATATCATTCTTCCGTACGCCGCCGTCCGCCGGCGCCGGTCCCGGAGGTCCACCGTAA

Coding sequence (CDS)

ATGCATTTCAGAGTGTTGCCGGACGTCAATCGGGTCTCCGATCTTCCTCCGAACGAGCCGGCGATTGGGTACAGAGTAGGCGGACTTCCTTATATCGCTCCTTCGTCCGTCGCCGGAGCTCCACGACCGCCGCCAACCCATTGCCGAAGATTTCTAAAATTCGCCGACAAAATTCCCTCAATTCCGATTCTGGCTCCCACCGCGGTGGACGTGCCGGAGGTGGGAGGTAAAAAGTTTCCGGTGAACTTAATGACCCAATCAGAACCGGCCGTGAAGGGGAGACCCGAAGGAGAGTCGATGGATGTGGTGGTGGCAGAAGCGTCGAATCGGGCGGTTCCAATGGCTGTCGGGTACAAAGTCGGCGGTGCAAAAATGGGATCTGTGATTCCGATGAAGAGGAAGTTAGTGAAGACAATGATGTATCACTCCATAAAGGATTTTGTTATATCATTCTTCCGTACGCCGCCGTCCGCCGGCGCCGGTCCCGGAGGTCCACCGTAA

Protein sequence

MHFRVLPDVNRVSDLPPNEPAIGYRVGGLPYIAPSSVAGAPRPPPTHCRRFLKFADKIPSIPILAPTAVDVPEVGGKKFPVNLMTQSEPAVKGRPEGESMDVVVAEASNRAVPMAVGYKVGGAKMGSVIPMKRKLVKTMMYHSIKDFVISFFRTPPSAGAGPGGPP
Homology
[Close]
BLAST of ClCG08G006110 vs. TrEMBL
Match: A0A0A0KH01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.3e-22
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 1 

Query: 69  VDVPEVGGKKFPVNLMTQSEPAVKGRPEGESMDVVVA---EASNRAVPMAVGYKVGGAKM 128
           +DVP VGG++FP+NLMT SE  ++ RPEGESM VV A   EAS+R V MA+GYK GG KM
Sbjct: 1   MDVPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60

Query: 129 GSVIPMKRKLVKTMMYHSIKDFVISFFRTPPSAGAGPGGP 166
            SVIPMKRKLVK MMY SIK+FVIS F   PS G+    P
Sbjct: 61  KSVIPMKRKLVKRMMYESIKNFVISRF---PSVGSSARAP 97

[Close]
BLAST of ClCG08G006110 vs. NCBI nr
Match: gi|700192473|gb|KGN47677.1| (hypothetical protein Csa_6G374700 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 3.3e-22
Identity = 64/100 (64.00%), Postives = 74/100 (74.00%), Query Frame = 1 

Query: 69  VDVPEVGGKKFPVNLMTQSEPAVKGRPEGESMDVVVA---EASNRAVPMAVGYKVGGAKM 128
           +DVP VGG++FP+NLMT SE  ++ RPEGESM VV A   EAS+R V MA+GYK GG KM
Sbjct: 1   MDVPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60

Query: 129 GSVIPMKRKLVKTMMYHSIKDFVISFFRTPPSAGAGPGGP 166
            SVIPMKRKLVK MMY SIK+FVIS F   PS G+    P
Sbjct: 61  KSVIPMKRKLVKRMMYESIKNFVISRF---PSVGSSARAP 97

The following BLAST results are available for this feature:
BLAST of ClCG08G006110 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH01_CUCSA2.3e-2264.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1[more]
BLAST of ClCG08G006110 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192473|gb|KGN47677.1|3.3e-2264.00hypothetical protein Csa_6G374700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G006110.1ClCG08G006110.1mRNA