Cp4.1LG13g04360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g04360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG13 : 6165572 .. 6165832 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATTCCGACAGCAGAGTACATACCAGGGGTGGGTTCTGAAAAGTTTCCGGCGAGCATAATTGCCGGATCAGAACCGGCCTTGGTGAGACCCATCGGAGAGTCACCGGCGGTGGCGGAATTTGGCAACCGGACGGTTCAAAAGAAATCTGTGATTCCCAAGAAGAGGAGGTTAGTGAAGACAATGATGTACCACGCCATGAAGAACTTTATCAAATCCGTCTTTCGTCGGAAGCCGTCCGCCGGAGCTCCACCGTAG

mRNA sequence

ATGGCAATTCCGACAGCAGAGTACATACCAGGGGTGGGTTCTGAAAAGTTTCCGGCGAGCATAATTGCCGGATCAGAACCGGCCTTGGTGAGACCCATCGGAGAGTCACCGGCGGTGGCGGAATTTGGCAACCGGACGGTTCAAAAGAAATCTGTGATTCCCAAGAAGAGGAGGTTAGTGAAGACAATGATGTACCACGCCATGAAGAACTTTATCAAATCCGTCTTTCGTCGGAAGCCGTCCGCCGGAGCTCCACCGTAG

Coding sequence (CDS)

ATGGCAATTCCGACAGCAGAGTACATACCAGGGGTGGGTTCTGAAAAGTTTCCGGCGAGCATAATTGCCGGATCAGAACCGGCCTTGGTGAGACCCATCGGAGAGTCACCGGCGGTGGCGGAATTTGGCAACCGGACGGTTCAAAAGAAATCTGTGATTCCCAAGAAGAGGAGGTTAGTGAAGACAATGATGTACCACGCCATGAAGAACTTTATCAAATCCGTCTTTCGTCGGAAGCCGTCCGCCGGAGCTCCACCGTAG

Protein sequence

MAIPTAEYIPGVGSEKFPASIIAGSEPALVRPIGESPAVAEFGNRTVQKKSVIPKKRRLVKTMMYHAMKNFIKSVFRRKPSAGAPP
Homology
[Close]
BLAST of Cp4.1LG13g04360 vs. TrEMBL
Match: A0A0A0KH01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-07
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1 

Query: 9  IPGVGSEKFPASIIAGSEPAL-VRPIGESPAVAEF-----GNRTVQK-----------KS 68
          +PGVG ++FP +++ GSE  + VRP GES AV E       +R VQ            KS
Sbjct: 3  VPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKS 62

Query: 69 VIPKKRRLVKTMMYHAMKNFIKSVFRRKPSAGA 85
          VIP KR+LVK MMY ++KNF+ S F   PS G+
Sbjct: 63 VIPMKRKLVKRMMYESIKNFVISRF---PSVGS 92

[Close]
BLAST of Cp4.1LG13g04360 vs. NCBI nr
Match: gi|700192473|gb|KGN47677.1| (hypothetical protein Csa_6G374700 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-07
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1 

Query: 9  IPGVGSEKFPASIIAGSEPAL-VRPIGESPAVAEF-----GNRTVQK-----------KS 68
          +PGVG ++FP +++ GSE  + VRP GES AV E       +R VQ            KS
Sbjct: 3  VPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKS 62

Query: 69 VIPKKRRLVKTMMYHAMKNFIKSVFRRKPSAGA 85
          VIP KR+LVK MMY ++KNF+ S F   PS G+
Sbjct: 63 VIPMKRKLVKRMMYESIKNFVISRF---PSVGS 92

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g04360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g04360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH01_CUCSA5.3e-0745.16Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1[more]
BLAST of Cp4.1LG13g04360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g04360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192473|gb|KGN47677.1|7.7e-0745.16hypothetical protein Csa_6G374700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g04360.1Cp4.1LG13g04360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g04360Cla013896Watermelon (97103) v1cpewmB170
Cp4.1LG13g04360Csa6G374700Cucumber (Chinese Long) v2cpecuB199
Cp4.1LG13g04360ClCG08G006110Watermelon (Charleston Gray)cpewcgB180
Cp4.1LG13g04360CSPI06G19920Wild cucumber (PI 183967)cpecpiB200
Cp4.1LG13g04360Lsi08G004780Bottle gourd (USVL1VR-Ls)cpelsiB158
Cp4.1LG13g04360CsaV3_6G033950Cucumber (Chinese Long) v3cpecucB0239
Cp4.1LG13g04360Bhi04G001467Wax gourdcpewgoB0252
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g04360Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG13g04360Cucurbita pepo (Zucchini)cpecpeB228
Cp4.1LG13g04360Cucurbita maxima (Rimu)cmacpeB033
Cp4.1LG13g04360Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g04360Cucurbita maxima (Rimu)cmacpeB705
Cp4.1LG13g04360Cucurbita moschata (Rifu)cmocpeB009
Cp4.1LG13g04360Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g04360Cucurbita moschata (Rifu)cmocpeB657
Cp4.1LG13g04360Melon (DHL92) v3.5.1cpemeB168
Cp4.1LG13g04360Melon (DHL92) v3.6.1cpemedB200
Cp4.1LG13g04360Silver-seed gourdcarcpeB0095
Cp4.1LG13g04360Silver-seed gourdcarcpeB1157