Cp4.1LG13g04360 (gene) Cucurbita pepo (Zucchini)

Overview
NameCp4.1LG13g04360
Typegene
OrganismCucurbita pepo (Cucurbita pepo (Zucchini))
DescriptionUnknown protein
LocationCp4.1LG13 : 6165572 .. 6165832 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAATTCCGACAGCAGAGTACATACCAGGGGTGGGTTCTGAAAAGTTTCCGGCGAGCATAATTGCCGGATCAGAACCGGCCTTGGTGAGACCCATCGGAGAGTCACCGGCGGTGGCGGAATTTGGCAACCGGACGGTTCAAAAGAAATCTGTGATTCCCAAGAAGAGGAGGTTAGTGAAGACAATGATGTACCACGCCATGAAGAACTTTATCAAATCCGTCTTTCGTCGGAAGCCGTCCGCCGGAGCTCCACCGTAG

mRNA sequence

ATGGCAATTCCGACAGCAGAGTACATACCAGGGGTGGGTTCTGAAAAGTTTCCGGCGAGCATAATTGCCGGATCAGAACCGGCCTTGGTGAGACCCATCGGAGAGTCACCGGCGGTGGCGGAATTTGGCAACCGGACGGTTCAAAAGAAATCTGTGATTCCCAAGAAGAGGAGGTTAGTGAAGACAATGATGTACCACGCCATGAAGAACTTTATCAAATCCGTCTTTCGTCGGAAGCCGTCCGCCGGAGCTCCACCGTAG

Coding sequence (CDS)

ATGGCAATTCCGACAGCAGAGTACATACCAGGGGTGGGTTCTGAAAAGTTTCCGGCGAGCATAATTGCCGGATCAGAACCGGCCTTGGTGAGACCCATCGGAGAGTCACCGGCGGTGGCGGAATTTGGCAACCGGACGGTTCAAAAGAAATCTGTGATTCCCAAGAAGAGGAGGTTAGTGAAGACAATGATGTACCACGCCATGAAGAACTTTATCAAATCCGTCTTTCGTCGGAAGCCGTCCGCCGGAGCTCCACCGTAG

Protein sequence

MAIPTAEYIPGVGSEKFPASIIAGSEPALVRPIGESPAVAEFGNRTVQKKSVIPKKRRLVKTMMYHAMKNFIKSVFRRKPSAGAPP
Homology
[Close]
BLAST of Cp4.1LG13g04360 vs. TrEMBL
Match: A0A0A0KH01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 5.3e-07
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1 

Query: 9  IPGVGSEKFPASIIAGSEPAL-VRPIGESPAVAEF-----GNRTVQK-----------KS 68
          +PGVG ++FP +++ GSE  + VRP GES AV E       +R VQ            KS
Sbjct: 3  VPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKS 62

Query: 69 VIPKKRRLVKTMMYHAMKNFIKSVFRRKPSAGA 85
          VIP KR+LVK MMY ++KNF+ S F   PS G+
Sbjct: 63 VIPMKRKLVKRMMYESIKNFVISRF---PSVGS 92

[Close]
BLAST of Cp4.1LG13g04360 vs. NCBI nr
Match: gi|700192473|gb|KGN47677.1| (hypothetical protein Csa_6G374700 [Cucumis sativus])

HSP 1 Score: 61.6 bits (148), Expect = 7.7e-07
Identity = 42/93 (45.16%), Postives = 55/93 (59.14%), Query Frame = 1 

Query: 9  IPGVGSEKFPASIIAGSEPAL-VRPIGESPAVAEF-----GNRTVQK-----------KS 68
          +PGVG ++FP +++ GSE  + VRP GES AV E       +R VQ            KS
Sbjct: 3  VPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKS 62

Query: 69 VIPKKRRLVKTMMYHAMKNFIKSVFRRKPSAGA 85
          VIP KR+LVK MMY ++KNF+ S F   PS G+
Sbjct: 63 VIPMKRKLVKRMMYESIKNFVISRF---PSVGS 92

The following BLAST results are available for this feature:
BLAST of Cp4.1LG13g04360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g04360 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH01_CUCSA5.3e-0745.16Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1[more]
BLAST of Cp4.1LG13g04360 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of Cp4.1LG13g04360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192473|gb|KGN47677.1|7.7e-0745.16hypothetical protein Csa_6G374700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cp4.1LG13g04360.1Cp4.1LG13g04360.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cp4.1LG13g04360Cla013896Watermelon (97103) v1cpewmB170
Cp4.1LG13g04360Csa6G374700Cucumber (Chinese Long) v2cpecuB199
Cp4.1LG13g04360ClCG08G006110Watermelon (Charleston Gray)cpewcgB180
Cp4.1LG13g04360CSPI06G19920Wild cucumber (PI 183967)cpecpiB200
Cp4.1LG13g04360Lsi08G004780Bottle gourd (USVL1VR-Ls)cpelsiB158
Cp4.1LG13g04360CsaV3_6G033950Cucumber (Chinese Long) v3cpecucB0239
Cp4.1LG13g04360Bhi04G001467Wax gourdcpewgoB0252
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cp4.1LG13g04360Melon (DHL92) v3.6.1cpemedB200
Cp4.1LG13g04360Silver-seed gourdcarcpeB0095
Cp4.1LG13g04360Silver-seed gourdcarcpeB1157
Cp4.1LG13g04360Cucurbita pepo (Zucchini)cpecpeB199
Cp4.1LG13g04360Cucurbita pepo (Zucchini)cpecpeB228
Cp4.1LG13g04360Cucurbita maxima (Rimu)cmacpeB033
Cp4.1LG13g04360Cucurbita maxima (Rimu)cmacpeB305
Cp4.1LG13g04360Cucurbita maxima (Rimu)cmacpeB705
Cp4.1LG13g04360Cucurbita moschata (Rifu)cmocpeB009
Cp4.1LG13g04360Cucurbita moschata (Rifu)cmocpeB268
Cp4.1LG13g04360Cucurbita moschata (Rifu)cmocpeB657
Cp4.1LG13g04360Melon (DHL92) v3.5.1cpemeB168