CSPI06G19920 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI06G19920
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	Unknown protein
Location	Chr6 : 17867261 .. 17867647 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TTGGGATCCAGAATCTCGCCGGAAAACAATTGTGTATCTCTGTTTCTAAAACCCACCCACATAATTGACCCGATTTCAATTCCAACTGCCATGGACGTGCCGGGGGTGGGCCGACAACAGTTTCCAATGAACTTAATGACTGGATCAGAATTGGGCATGAGAGTGAGGCCTGAAGGAGAGTCCATGGCTGTGGTGGAGGCGGTAACTGTGGAAGCATCGGATCGGGTAGTTCAAATGGCGATGGGGTACAAAACCGGCGGTCCAAAAATGAAATCGGTGATTCCGATGAAGAGAAAGCTTGTGAAGAGAATGATGTATGAGTCCATAAAGAATTTTGTCATATCACGGTTTCCGTCCGTCGGCTCCAGCGCCAGAGCGCCACTGTGA

mRNA sequence

ATGGACGTGCCGGGGGTGGGCCGACAACAGTTTCCAATGAACTTAATGACTGGATCAGAATTGGGCATGAGAGTGAGGCCTGAAGGAGAGTCCATGGCTGTGGTGGAGGCGGTAACTGTGGAAGCATCGGATCGGGTAGTTCAAATGGCGATGGGGTACAAAACCGGCGGTCCAAAAATGAAATCGGTGATTCCGATGAAGAGAAAGCTTGTGAAGAGAATGATGTATGAGTCCATAAAGAATTTTGTCATATCACGGTTTCCGTCCGTCGGCTCCAGCGCCAGAGCGCCACTGTGA

Coding sequence (CDS)

ATGGACGTGCCGGGGGTGGGCCGACAACAGTTTCCAATGAACTTAATGACTGGATCAGAATTGGGCATGAGAGTGAGGCCTGAAGGAGAGTCCATGGCTGTGGTGGAGGCGGTAACTGTGGAAGCATCGGATCGGGTAGTTCAAATGGCGATGGGGTACAAAACCGGCGGTCCAAAAATGAAATCGGTGATTCCGATGAAGAGAAAGCTTGTGAAGAGAATGATGTATGAGTCCATAAAGAATTTTGTCATATCACGGTTTCCGTCCGTCGGCTCCAGCGCCAGAGCGCCACTGTGA

Homology

[Close]

BLAST of CSPI06G19920 vs. TrEMBL
Match: A0A0A0KH01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 4.3e-45
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1


Query: 1  MDVPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60
          MDVPGVG QQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM
Sbjct: 1  MDVPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60

Query: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 99
          KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL
Sbjct: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 98

[Close]

BLAST of CSPI06G19920 vs. NCBI nr
Match: gi|700192473|gb|KGN47677.1| (hypothetical protein Csa_6G374700 [Cucumis sativus])

HSP 1 Score: 188.3 bits (477), Expect = 6.2e-45
Identity = 97/98 (98.98%), Postives = 97/98 (98.98%), Query Frame = 1


Query: 1  MDVPGVGRQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60
          MDVPGVG QQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM
Sbjct: 1  MDVPGVGGQQFPMNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKM 60

Query: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 99
          KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL
Sbjct: 61 KSVIPMKRKLVKRMMYESIKNFVISRFPSVGSSARAPL 98

The following BLAST results are available for this feature:

BLAST of CSPI06G19920 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CSPI06G19920 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH01_CUCSA	4.3e-45	98.98	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1	[more]

BLAST of CSPI06G19920 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CSPI06G19920 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700192473\|gb\|KGN47677.1\|	6.2e-45	98.98	hypothetical protein Csa_6G374700 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI06G19920.1	CSPI06G19920.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI06G19920	Cla013897	Watermelon (97103) v1	cpiwmB482
CSPI06G19920	Csa6G374700	Cucumber (Chinese Long) v2	cpicuB313
CSPI06G19920	ClCG08G006110	Watermelon (Charleston Gray)	cpiwcgB533
CSPI06G19920	Lsi08G004780	Bottle gourd (USVL1VR-Ls)	cpilsiB489
CSPI06G19920	CsaV3_6G033950	Cucumber (Chinese Long) v3	cpicucB363
CSPI06G19920	Cla97C08G148880	Watermelon (97103) v2	cpiwmbB523
CSPI06G19920	Bhi04G001467	Wax gourd	cpiwgoB577
CSPI06G19920	Cp4.1LG13g04360	Cucurbita pepo (Zucchini)	cpecpiB200

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI06G19920	Cucumber (Gy14) v1	cgycpiB492
CSPI06G19920	Cucumber (Gy14) v2	cgybcpiB287