Cla97C08G148880 (gene) Watermelon (97103) v2

Overview
NameCla97C08G148880
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
DescriptionUnknown protein
LocationCla97Chr08 : 17169439 .. 17169819 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCCAGAATCTGGCCGCTACACAATCCTGTTCCTTTGCTTCCTAAACCCCAACCAATCGCCCAAACAATTGCCCCGATTCCGATTCTGGTTCCCCCCATGGTGGACCTGATGGAGGTGGACTTAATCACCGGATCAGTACCGGGCGTGAAGGTGAGACCCAAAGGAGAATCCATGGACGTGGTGGAGCCGGTGTTGGCGGAAGCGTCCAACCGAGCAGTTCAAATGGCGATCGGTCACAAAGCCCCACTGAAATCTGTGATTCCCAAGCGGAGGAAGTTAGTGAAGACAATGATGTATCACTCTATAAAGGATTTTGTTACATCACTCTTTCGTCCGCCGCTGTCCACTGCTGCCGGCACCGGAGCTCCACCCTAA

mRNA sequence

ATGGGATCCAGAATCTGGCCGCTACACAATCCTGTTCCTTTGCTTCCTAAACCCCAACCAATCGCCCAAACAATTGCCCCGATTCCGATTCTGGTTCCCCCCATGGTGGACCTGATGGAGGTGGACTTAATCACCGGATCAGTACCGGGCGTGAAGGTGAGACCCAAAGGAGAATCCATGGACGTGGTGGAGCCGGTGTTGGCGGAAGCGTCCAACCGAGCAGTTCAAATGGCGATCGGTCACAAAGCCCCACTGAAATCTGTGATTCCCAAGCGGAGGAAGTTAGTGAAGACAATGATGTATCACTCTATAAAGGATTTTGTTACATCACTCTTTCGTCCGCCGCTGTCCACTGCTGCCGGCACCGGAGCTCCACCCTAA

Coding sequence (CDS)

ATGGGATCCAGAATCTGGCCGCTACACAATCCTGTTCCTTTGCTTCCTAAACCCCAACCAATCGCCCAAACAATTGCCCCGATTCCGATTCTGGTTCCCCCCATGGTGGACCTGATGGAGGTGGACTTAATCACCGGATCAGTACCGGGCGTGAAGGTGAGACCCAAAGGAGAATCCATGGACGTGGTGGAGCCGGTGTTGGCGGAAGCGTCCAACCGAGCAGTTCAAATGGCGATCGGTCACAAAGCCCCACTGAAATCTGTGATTCCCAAGCGGAGGAAGTTAGTGAAGACAATGATGTATCACTCTATAAAGGATTTTGTTACATCACTCTTTCGTCCGCCGCTGTCCACTGCTGCCGGCACCGGAGCTCCACCCTAA

Protein sequence

MGSRIWPLHNPVPLLPKPQPIAQTIAPIPILVPPMVDLMEVDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKAPLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAAGTGAPP
Homology
[Close]
BLAST of Cla97C08G148880 vs. NCBI nr
Match: KGN47677.1 (hypothetical protein Csa_6G374700 [Cucumis sativus])

HSP 1 Score: 83.2 bits (204), Expect = 7.0e-13
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 0 

Query: 41  VDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKA---PLKSVIPKRRKLVK 100
           ++L+TGS  G++VRP+GESM VVE V  EAS+R VQMA+G+K     +KSVIP +RKLVK
Sbjct: 13  MNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVK 72

Query: 101 TMMYHSIKDFVTSLFRPPLSTAA 121
            MMY SIK+FV S F P + ++A
Sbjct: 73  RMMYESIKNFVISRF-PSVGSSA 94

[Close]
BLAST of Cla97C08G148880 vs. NCBI nr
Match: KGN47678.1 (hypothetical protein Csa_6G374710 [Cucumis sativus])

HSP 1 Score: 53.9 bits (128), Expect = 4.5e-04
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 85  LKSVIPKRRKLVKTMMYHSIKDFVTSLFRP 115
           +KSVIPK+RKLVKTM+YHS+KDF+ SLFRP
Sbjct: 38  IKSVIPKQRKLVKTMIYHSLKDFLISLFRP 67

[Close]
BLAST of Cla97C08G148880 vs. TrEMBL
Match: tr|A0A0A0KH01|A0A0A0KH01_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 4.6e-13
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 0 

Query: 41  VDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKA---PLKSVIPKRRKLVK 100
           ++L+TGS  G++VRP+GESM VVE V  EAS+R VQMA+G+K     +KSVIP +RKLVK
Sbjct: 13  MNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVK 72

Query: 101 TMMYHSIKDFVTSLFRPPLSTAA 121
            MMY SIK+FV S F P + ++A
Sbjct: 73  RMMYESIKNFVISRF-PSVGSSA 94

[Close]
BLAST of Cla97C08G148880 vs. TrEMBL
Match: tr|A0A0A0KDQ7|A0A0A0KDQ7_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 3.0e-04
Identity = 24/30 (80.00%), Postives = 29/30 (96.67%), Query Frame = 0 

Query: 85  LKSVIPKRRKLVKTMMYHSIKDFVTSLFRP 115
           +KSVIPK+RKLVKTM+YHS+KDF+ SLFRP
Sbjct: 38  IKSVIPKQRKLVKTMIYHSLKDFLISLFRP 67

The following BLAST results are available for this feature:
BLAST of Cla97C08G148880 vs. NCBI nr
Match NameE-valueIdentityDescription
KGN47677.17.0e-1357.83hypothetical protein Csa_6G374700 [Cucumis sativus][more]
KGN47678.14.5e-0480.00hypothetical protein Csa_6G374710 [Cucumis sativus][more]
BLAST of Cla97C08G148880 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0KH01|A0A0A0KH01_CUCSA4.6e-1357.83Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374700 PE=4 SV=1[more]
tr|A0A0A0KDQ7|A0A0A0KDQ7_CUCSA3.0e-0480.00Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G374710 PE=4 SV=1[more]
BLAST of Cla97C08G148880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of Cla97C08G148880 vs. TAIR10
Match NameE-valueIdentityDescription
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C08G148880.1Cla97C08G148880.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C08G148880Cla013896Watermelon (97103) v1wmwmbB100
Cla97C08G148880Csa6G374700Cucumber (Chinese Long) v2cuwmbB497
Cla97C08G148880ClCG08G006120Watermelon (Charleston Gray)wcgwmbB336
Cla97C08G148880CSPI06G18430Wild cucumber (PI 183967)cpiwmbB524
Cla97C08G148880CSPI06G19920Wild cucumber (PI 183967)cpiwmbB523
Cla97C08G148880CsaV3_6G031320Cucumber (Chinese Long) v3cucwmbB517
Cla97C08G148880CsaV3_6G033950Cucumber (Chinese Long) v3cucwmbB516
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C08G148880Silver-seed gourdcarwmbB0063
Cla97C08G148880Silver-seed gourdcarwmbB0862
Cla97C08G148880Cucurbita maxima (Rimu)cmawmbB319
Cla97C08G148880Cucurbita maxima (Rimu)cmawmbB786
Cla97C08G148880Cucurbita moschata (Rifu)cmowmbB026
Cla97C08G148880Cucurbita moschata (Rifu)cmowmbB302
Cla97C08G148880Cucurbita moschata (Rifu)cmowmbB760
Cla97C08G148880Bottle gourd (USVL1VR-Ls)lsiwmbB445
Cla97C08G148880Melon (DHL92) v3.6.1medwmbB294
Cla97C08G148880Melon (DHL92) v3.5.1mewmbB308
Cla97C08G148880Wax gourdwgowmbB325