ClCG08G006120 (gene) Watermelon (Charleston Gray)

Overview
NameClCG08G006120
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr08 : 18428939 .. 18429319 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGATCCAGAATCTGGCCGCTACACAATCCTGTTCCTTTGCTTCCTAAACCCCAACCAATCGCCCAAACAATTGCCCCGATTCCGATTCTGGTTCCCCCCATGGTGGACCTGATGGAGGTGGACTTAATCACCGGATCAGTACCGGGCGTGAAGGTGAGACCCAAAGGAGAATCCATGGACGTGGTGGAGCCGGTGTTGGCGGAAGCGTCCAACCGAGCAGTTCAAATGGCGATCGGTCACAAAGCCCCACTGAAATCTGTGATTCCCAAGCGGAGGAAGTTAGTGAAGACAATGATGTATCACTCTATAAAGGATTTTGTTACATCACTCTTTCGTCCGCCGCTGTCCACTGCTGCCGGCACCGGAGCTCCACCCTAA

mRNA sequence

ATGGGATCCAGAATCTGGCCGCTACACAATCCTGTTCCTTTGCTTCCTAAACCCCAACCAATCGCCCAAACAATTGCCCCGATTCCGATTCTGGTTCCCCCCATGGTGGACCTGATGGAGGTGGACTTAATCACCGGATCAGTACCGGGCGTGAAGGTGAGACCCAAAGGAGAATCCATGGACGTGGTGGAGCCGGTGTTGGCGGAAGCGTCCAACCGAGCAGTTCAAATGGCGATCGGTCACAAAGCCCCACTGAAATCTGTGATTCCCAAGCGGAGGAAGTTAGTGAAGACAATGATGTATCACTCTATAAAGGATTTTGTTACATCACTCTTTCGTCCGCCGCTGTCCACTGCTGCCGGCACCGGAGCTCCACCCTAA

Coding sequence (CDS)

ATGGGATCCAGAATCTGGCCGCTACACAATCCTGTTCCTTTGCTTCCTAAACCCCAACCAATCGCCCAAACAATTGCCCCGATTCCGATTCTGGTTCCCCCCATGGTGGACCTGATGGAGGTGGACTTAATCACCGGATCAGTACCGGGCGTGAAGGTGAGACCCAAAGGAGAATCCATGGACGTGGTGGAGCCGGTGTTGGCGGAAGCGTCCAACCGAGCAGTTCAAATGGCGATCGGTCACAAAGCCCCACTGAAATCTGTGATTCCCAAGCGGAGGAAGTTAGTGAAGACAATGATGTATCACTCTATAAAGGATTTTGTTACATCACTCTTTCGTCCGCCGCTGTCCACTGCTGCCGGCACCGGAGCTCCACCCTAA

Protein sequence

MGSRIWPLHNPVPLLPKPQPIAQTIAPIPILVPPMVDLMEVDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKAPLKSVIPKRRKLVKTMMYHSIKDFVTSLFRPPLSTAAGTGAPP
Homology
[Close]
BLAST of ClCG08G006120 vs. TrEMBL
Match: A0A0A0KH01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 85.5 bits (210), Expect = 5.1e-14
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1 

Query: 41  VDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKA---PLKSVIPKRRKLVK 100
           ++L+TGS  G++VRP+GESM VVE V  EAS+R VQMA+G+K     +KSVIP +RKLVK
Sbjct: 13  MNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVK 72

Query: 101 TMMYHSIKDFVTSLFRPPLSTAA 121
            MMY SIK+FV S F P + ++A
Sbjct: 73  RMMYESIKNFVISRF-PSVGSSA 94

[Close]
BLAST of ClCG08G006120 vs. NCBI nr
Match: gi|700192473|gb|KGN47677.1| (hypothetical protein Csa_6G374700 [Cucumis sativus])

HSP 1 Score: 85.5 bits (210), Expect = 7.3e-14
Identity = 48/83 (57.83%), Postives = 63/83 (75.90%), Query Frame = 1 

Query: 41  VDLITGSVPGVKVRPKGESMDVVEPVLAEASNRAVQMAIGHKA---PLKSVIPKRRKLVK 100
           ++L+TGS  G++VRP+GESM VVE V  EAS+R VQMA+G+K     +KSVIP +RKLVK
Sbjct: 13  MNLMTGSELGMRVRPEGESMAVVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVK 72

Query: 101 TMMYHSIKDFVTSLFRPPLSTAA 121
            MMY SIK+FV S F P + ++A
Sbjct: 73  RMMYESIKNFVISRF-PSVGSSA 94

The following BLAST results are available for this feature:
BLAST of ClCG08G006120 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH01_CUCSA5.1e-1457.83Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1[more]
BLAST of ClCG08G006120 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192473|gb|KGN47677.1|7.3e-1457.83hypothetical protein Csa_6G374700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG08G006120.1ClCG08G006120.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG08G006120Cla013897Watermelon (97103) v1wcgwmB400
ClCG08G006120Cla97C08G148880Watermelon (97103) v2wcgwmbB336
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
ClCG08G006120Cucurbita moschata (Rifu)cmowcgB026
ClCG08G006120Cucurbita moschata (Rifu)cmowcgB265
ClCG08G006120Cucurbita moschata (Rifu)cmowcgB680
ClCG08G006120Wild cucumber (PI 183967)cpiwcgB534
ClCG08G006120Melon (DHL92) v3.5.1mewcgB301
ClCG08G006120Cucurbita pepo (Zucchini)cpewcgB180
ClCG08G006120Cucurbita pepo (Zucchini)cpewcgB415
ClCG08G006120Cucurbita pepo (Zucchini)cpewcgB710
ClCG08G006120Bottle gourd (USVL1VR-Ls)lsiwcgB439
ClCG08G006120Melon (DHL92) v3.6.1medwcgB293
ClCG08G006120Silver-seed gourdcarwcgB0066
ClCG08G006120Silver-seed gourdcarwcgB0803
ClCG08G006120Cucumber (Chinese Long) v3cucwcgB527
ClCG08G006120Wax gourdwcgwgoB624
ClCG08G006120Cucurbita maxima (Rimu)cmawcgB034
ClCG08G006120Cucurbita maxima (Rimu)cmawcgB273
ClCG08G006120Cucurbita maxima (Rimu)cmawcgB678