CSPI06G18430 (gene) Wild cucumber (PI 183967)

Overview
NameCSPI06G18430
Typegene
OrganismCucumis sativus (Wild cucumber (PI 183967))
DescriptionUnknown protein
LocationChr6 : 16798477 .. 16798683 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTGGAGGGGACGGTGGCGGAAGCGTCGAACCCTGCGGTTCAAATGACGATGGGATACAAAGGTGGGTGTAGAAAAATGATTTCTGTGATTCCAAAGCAGAGACAGTTAGTGAAGACAATGATGTATCACTCCATAAAGTGTTTTATTATATCATTCTTTCGTCTATCGTTCTCCACTGCTACCGGTACCGGAGCTCCTCCGTAG

mRNA sequence

ATGGTGGAGGGGACGGTGGCGGAAGCGTCGAACCCTGCGGTTCAAATGACGATGGGATACAAAGGTGGGTGTAGAAAAATGATTTCTGTGATTCCAAAGCAGAGACAGTTAGTGAAGACAATGATGTATCACTCCATAAAGTGTTTTATTATATCATTCTTTCGTCTATCGTTCTCCACTGCTACCGGTACCGGAGCTCCTCCGTAG

Coding sequence (CDS)

ATGGTGGAGGGGACGGTGGCGGAAGCGTCGAACCCTGCGGTTCAAATGACGATGGGATACAAAGGTGGGTGTAGAAAAATGATTTCTGTGATTCCAAAGCAGAGACAGTTAGTGAAGACAATGATGTATCACTCCATAAAGTGTTTTATTATATCATTCTTTCGTCTATCGTTCTCCACTGCTACCGGTACCGGAGCTCCTCCGTAG
Homology
[Close]
BLAST of CSPI06G18430 vs. TrEMBL
Match: A0A0A0KH01_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 7.3e-07
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 

Query: 1  MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRQLVKTMMYHSIKCFIISFF 55
          +VE    EAS+  VQM MGYK G  KM SVIP +R+LVK MMY SIK F+IS F
Sbjct: 34 VVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVISRF 87

[Close]
BLAST of CSPI06G18430 vs. NCBI nr
Match: gi|700192473|gb|KGN47677.1| (hypothetical protein Csa_6G374700 [Cucumis sativus])

HSP 1 Score: 60.8 bits (146), Expect = 1.0e-06
Identity = 33/54 (61.11%), Postives = 38/54 (70.37%), Query Frame = 1 

Query: 1  MVEGTVAEASNPAVQMTMGYKGGCRKMISVIPKQRQLVKTMMYHSIKCFIISFF 55
          +VE    EAS+  VQM MGYK G  KM SVIP +R+LVK MMY SIK F+IS F
Sbjct: 34 VVEAVTVEASDRVVQMAMGYKTGGPKMKSVIPMKRKLVKRMMYESIKNFVISRF 87

The following BLAST results are available for this feature:
BLAST of CSPI06G18430 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CSPI06G18430 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH01_CUCSA7.3e-0761.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G374700 PE=4 SV=1[more]
BLAST of CSPI06G18430 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CSPI06G18430 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192473|gb|KGN47677.1|1.0e-0661.11hypothetical protein Csa_6G374700 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CSPI06G18430.1CSPI06G18430.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CSPI06G18430Cla013897Watermelon (97103) v1cpiwmB483
CSPI06G18430ClCG08G006110Watermelon (Charleston Gray)cpiwcgB534
CSPI06G18430Lsi08G004780Bottle gourd (USVL1VR-Ls)cpilsiB490
CSPI06G18430CsaV3_6G031320Cucumber (Chinese Long) v3cpicucB363
CSPI06G18430Cla97C08G148880Watermelon (97103) v2cpiwmbB524
CSPI06G18430Bhi04G001467Wax gourdcpiwgoB578
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CSPI06G18430Cucumber (Gy14) v2cgybcpiB191
CSPI06G18430Cucumber (Gy14) v2cgybcpiB287
CSPI06G18430Wild cucumber (PI 183967)cpicpiB166
CSPI06G18430Cucumber (Gy14) v1cgycpiB077
CSPI06G18430Cucumber (Chinese Long) v2cpicuB313
CSPI06G18430Melon (DHL92) v3.5.1cpimeB505