Cla97C03G057970 (gene) Watermelon (97103) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla97C03G057970
Type	gene
Organism	Citrullus lanatus (Watermelon (97103) v2)
Description	Small nuclear ribonucleoprotein
Location	Cla97Chr03 : 7167217 .. 7167555 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTGTAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGACGTAACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTATCGGTTTAG

mRNA sequence

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTGTAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGACGTAACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTATCGGTTTAG

Coding sequence (CDS)

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGATTTTAGATCGTGTAGGAAAGGTAAGAAAGCTGCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTAGGCAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGACGCAGTAGAGTATCGTAGCACTCGACGTAACTCGCCTTCTCCGATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGTCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCACTGCTATCGGTTTAG

Protein sequence

MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV

Homology

[Close]

BLAST of Cla97C03G057970 vs. NCBI nr
Match: XP_011649337.1 (PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_1G025880 [Cucumis sativus])

HSP 1 Score: 220.7 bits (561), Expect = 2.5e-54
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNVESNPE LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Cla97C03G057970 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 215.3 bits (547), Expect = 1.0e-52
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ GSNVESNP+ LDRVGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Cla97C03G057970 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo])

HSP 1 Score: 214.5 bits (545), Expect = 1.8e-52
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN E LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Cla97C03G057970 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 213.4 bits (542), Expect = 4.0e-52
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ G NVESNP+ LDRVGKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Cla97C03G057970 vs. NCBI nr
Match: XP_023001494.1 (uncharacterized protein LOC111495614 [Cucurbita maxima])

HSP 1 Score: 210.3 bits (534), Expect = 3.4e-51
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           M+QESGGSMVQ GSNVESNP+ LDRVGKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRST R+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Cla97C03G057970 vs. TrEMBL
Match: tr|A0A0A0LSZ5|A0A0A0LSZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.7e-54
Identity = 108/112 (96.43%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNVESNPE LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Cla97C03G057970 vs. TrEMBL
Match: tr|A0A1S3BAH4|A0A1S3BAH4_CUCME (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 214.5 bits (545), Expect = 1.2e-52
Identity = 106/112 (94.64%), Postives = 108/112 (96.43%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN E LD +GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRR+SPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of Cla97C03G057970 vs. TrEMBL
Match: tr|A0A061GCV7|A0A061GCV7_THECC (Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_029454 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 4.4e-39
Identity = 82/112 (73.21%), Postives = 95/112 (84.82%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQE G S++Q GS+ + N    D V +VRKLLFRRML+GIKDGRFFLG F+CIDKQGNI
Sbjct: 29  MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCIDKQGNI 88

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD++EYRSTR +SPSPMEQRCLGLILIP SCR SCHVD +I+EQL+LL V
Sbjct: 89  ILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLLKV 140

[Close]

BLAST of Cla97C03G057970 vs. TrEMBL
Match: tr|A0A061GKU0|A0A061GKU0_THECC (Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_029454 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 1.3e-38
Identity = 81/110 (73.64%), Postives = 94/110 (85.45%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQE G S++Q GS+ + N    D V +VRKLLFRRML+GIKDGRFFLG F+CIDKQGNI
Sbjct: 1   MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL 111
           ILQD++EYRSTR +SPSPMEQRCLGLILIP SCR SCHVD +I+EQL+LL
Sbjct: 61  ILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLL 110

[Close]

BLAST of Cla97C03G057970 vs. TrEMBL
Match: tr|A0A0D2RE93|A0A0D2RE93_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G045800 PE=4 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 1.7e-38
Identity = 79/112 (70.54%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQE G S++Q G++  SN    D V +VRKLLFRRML+GIKDGRFFLG F+C+DKQGNI
Sbjct: 1   MEQEVGESLIQLGNSDGSNSSSSDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCLDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD +EYRSTRR+SPSPMEQRCLGL+LIP+SC+ SCHVD +++EQL+LL V
Sbjct: 61  ILQDTIEYRSTRRSSPSPMEQRCLGLVLIPSSCQNSCHVDCSVEEQLSLLKV 112

[Close]

BLAST of Cla97C03G057970 vs. Swiss-Prot
Match: sp|Q55A45|RSMB_DICDI (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 2.9e-06
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0


Query: 23  LDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQ- 82
           + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ 
Sbjct: 4   MPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEK 63

Query: 83  RCLGLILIPNSCRVSCHVDSTIDEQLAL 110
           R LG+ILI     VS  V++   E+  L
Sbjct: 64  RTLGMILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of Cla97C03G057970 vs. Swiss-Prot
Match: sp|Q6GQ67|LMD1A_XENLA (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-a PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.3e-05
Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 3   QESGGSMVQDGSNVESNPEILDRV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 62
           +E+G S     S  +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPSAGDSDAEPGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 63  LQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD 101
           L  A E+     + P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of Cla97C03G057970 vs. Swiss-Prot
Match: sp|A2BIG9|LSMD1_DANRE (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=naa38 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 7.3e-05
Identity = 29/74 (39.19%), Postives = 41/74 (55.41%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLI 87
           K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +  +S S  E R LGL 
Sbjct: 27  KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKS-TDSLSQGEPRVLGLA 86

Query: 88  LIPNSCRVSCHVDS 102
           +IP    VS  V++
Sbjct: 87  MIPGHHVVSIEVET 99

[Close]

BLAST of Cla97C03G057970 vs. Swiss-Prot
Match: sp|A4IGZ4|LSMD1_XENTR (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 47.4 bits (111), Expect = 1.2e-04
Identity = 34/99 (34.34%), Postives = 48/99 (48.48%), Query Frame = 0


Query: 3   QESGGSMVQDGSNVESNPEILDRV-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 62
           +E+G S        +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPGAGDSDAEAGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 63  LQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVD 101
           L  A E+     + P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of Cla97C03G057970 vs. Swiss-Prot
Match: sp|Q6NU60|LMD1B_XENLA (N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-b PE=3 SV=1)

HSP 1 Score: 45.8 bits (107), Expect = 3.6e-04
Identity = 28/73 (38.36%), Postives = 38/73 (52.05%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRNSPSPMEQRCLGLI 87
           K+  LL R M I + DGR  +G F C D+  N+IL  A E+     +S    E R LGL 
Sbjct: 32  KLESLLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-SDSFRIREPRVLGLA 91

Query: 88  LIPNSCRVSCHVD 101
           ++P    VS  V+
Sbjct: 92  MVPGHHIVSIQVE 103

[Close]

BLAST of Cla97C03G057970 vs. TAIR10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 151.8 bits (382), Expect = 2.6e-37
Identity = 74/112 (66.07%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPEILDRVGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQ +  S     S  E +    D + ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNI
Sbjct: 1   MEQAAERSSTIVASTSEGSD--FDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRNSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD VEYRS RR+SPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Sbjct: 61  ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

The following BLAST results are available for this feature:

BLAST of Cla97C03G057970 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649337.1	2.5e-54	96.43	PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hy...	[more]
XP_023520042.1	1.0e-52	94.64	uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]	[more]
XP_008444477.1	1.8e-52	94.64	PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]	[more]
XP_022927243.1	4.0e-52	93.75	uncharacterized protein LOC111434149 [Cucurbita moschata]	[more]
XP_023001494.1	3.4e-51	91.96	uncharacterized protein LOC111495614 [Cucurbita maxima]	[more]

BLAST of Cla97C03G057970 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSZ5\|A0A0A0LSZ5_CUCSA	1.7e-54	96.43	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1	[more]
tr\|A0A1S3BAH4\|A0A1S3BAH4_CUCME	1.2e-52	94.64	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]
tr\|A0A061GCV7\|A0A061GCV7_THECC	4.4e-39	73.21	Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao OX=3...	[more]
tr\|A0A061GKU0\|A0A061GKU0_THECC	1.3e-38	73.64	Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao OX=3...	[more]
tr\|A0A0D2RE93\|A0A0D2RE93_GOSRA	1.7e-38	70.54	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G045800 PE=4 ...	[more]

BLAST of Cla97C03G057970 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q55A45\|RSMB_DICDI	2.9e-06	32.95	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
sp\|Q6GQ67\|LMD1A_XENLA	7.3e-05	35.35	N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]
sp\|A2BIG9\|LSMD1_DANRE	7.3e-05	39.19	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=n...	[more]
sp\|A4IGZ4\|LSMD1_XENTR	1.2e-04	34.34	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
sp\|Q6NU60\|LMD1B_XENLA	3.6e-04	38.36	N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]

BLAST of Cla97C03G057970 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18372.1	2.6e-37	66.07	Small nuclear ribonucleoprotein family protein	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0031417	NatC complex

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR034110	LSMD1
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031417	NatC complex
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla97C03G057970.1	Cla97C03G057970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 23..106 e-value: 1.7E-17 score: 65.0
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 19..111
None	No IPR available	PANTHER	PTHR10701:SF9	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN	coord: 19..111
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 30..89 e-value: 1.2E-7 score: 31.2
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 28..100 e-value: 3.4878E-25 score: 90.6941
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 25..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla97C03G057970	Cla019570	Watermelon (97103) v1	wmwmbB124
Cla97C03G057970	Csa1G025880	Cucumber (Chinese Long) v2	cuwmbB051
Cla97C03G057970	MELO3C002751	Melon (DHL92) v3.5.1	mewmbB154
Cla97C03G057970	ClCG03G006700	Watermelon (Charleston Gray)	wcgwmbB186
Cla97C03G057970	CSPI01G04670	Wild cucumber (PI 183967)	cpiwmbB052
Cla97C03G057970	Cucsa.111840	Cucumber (Gy14) v1	cgywmbB154
Cla97C03G057970	CmaCh13G005240	Cucurbita maxima (Rimu)	cmawmbB226
Cla97C03G057970	CmoCh13G005530	Cucurbita moschata (Rifu)	cmowmbB210
Cla97C03G057970	Lsi02G009030	Bottle gourd (USVL1VR-Ls)	lsiwmbB181
Cla97C03G057970	CsGy1G004550	Cucumber (Gy14) v2	cgybwmbB050
Cla97C03G057970	Carg25443	Silver-seed gourd	carwmbB0210
Cla97C03G057970	CsaV3_1G004630	Cucumber (Chinese Long) v3	cucwmbB051
Cla97C03G057970	Bhi08G001673	Wax gourd	wgowmbB471

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla97C03G057970	Watermelon (97103) v2	wmbwmbB015
Cla97C03G057970	Silver-seed gourd	carwmbB0309
Cla97C03G057970	Silver-seed gourd	carwmbB0447
Cla97C03G057970	Silver-seed gourd	carwmbB0765
Cla97C03G057970	Cucumber (Gy14) v2	cgybwmbB429
Cla97C03G057970	Cucumber (Gy14) v1	cgywmbB024
Cla97C03G057970	Cucurbita maxima (Rimu)	cmawmbB416
Cla97C03G057970	Cucurbita maxima (Rimu)	cmawmbB682
Cla97C03G057970	Cucurbita maxima (Rimu)	cmawmbB887
Cla97C03G057970	Cucurbita moschata (Rifu)	cmowmbB396
Cla97C03G057970	Cucurbita moschata (Rifu)	cmowmbB655
Cla97C03G057970	Cucurbita moschata (Rifu)	cmowmbB857
Cla97C03G057970	Wild cucumber (PI 183967)	cpiwmbB477
Cla97C03G057970	Cucumber (Chinese Long) v3	cucwmbB470
Cla97C03G057970	Cucumber (Chinese Long) v2	cuwmbB453
Cla97C03G057970	Bottle gourd (USVL1VR-Ls)	lsiwmbB130
Cla97C03G057970	Melon (DHL92) v3.6.1	medwmbB143
Cla97C03G057970	Melon (DHL92) v3.6.1	medwmbB523
Cla97C03G057970	Melon (DHL92) v3.5.1	mewmbB530
Cla97C03G057970	Watermelon (Charleston Gray)	wcgwmbB104
Cla97C03G057970	Watermelon (97103) v1	wmwmbB261
Cla97C03G057970	Wax gourd	wgowmbB422