Csa1G025880 (gene) Cucumber (Chinese Long) v2
The following sequences are available for this feature:
Legend: five_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.TATGTTAGTGTATGTAAAAGTGTGTATATTTTTTTGATTACAAGAGGTAGAGATTGTTGAGATGCGTTTTTGATTTAGATCCTATTGTTACTCCTCCCCGCTCTCTCCATCTCTCTCTCTTTCATCCACGAGAAGCCAAGAATCACAATCGGCTCCCAAGTTCCCCTCTGCTCCGCCGTCCCTGTATGACTCTACTTACTCCCTTTTAATTACCTTACCAACATGTTTCCCTTTTTCTACTTACTCCATTTCCTTCGATCCTTCACGATTTCCTGCTCATTCTAAACTGATCCTTTCTTTCTCACCCCCCATCCCATTATTGCCTTTCTTTTAGGCCTCACCATGATTTTCTTTTATGTTTTATTACAAATCCAACCTGAATCAGACCACCCTCTTATTGGGCCAATGGTTCAAGGCCATTTTCATATATTAACTTGGACATTTAGGTGTTTTAAGTTTTAGTCGATGCTTTCCATGATACAATACTGTGCTACTCAACTCAATTTACACATGATTCTCAATTATGAAAACAATGGATTAATCTCTGGCACTTCGATGCTGGGTATATGGTTATTGGTTATTAGTTATTATGATTTGTTGTTTTTTGTGTTTCATACTTCATGACCTGCAGGCTTCTTGATGTATTCTTCTAAAACTAGATTGTTGAATCCCATATGCTTGCTATTGAATGTGGATTCTAATTCCTTACCCATAATTGCTTTGAAACCTGCTTCCATATTCACTTTAGTTTTACCTATTTCCTTTAGTGCAAAGGAAATTGTGCTTTCTTTGGCTTTACCATGTCTTTATCGAAACACTCATGCCTAAAAGAGGCACAACTTGCATTAATTAGCCATGTCAAGAGCTTTAGTTCAATTGAGTAGTTCTCTTCTCTTTATTCCTCCACCTTCCCCCTCTCTCTGTACCTTCCACTGGGCCTCCTTCAATACATCCCTGTTGATCATTGTGAGGGACATTCTTTTGCTGCTGTTTTCTTTTAATATAACAACTGTGAGATGGGAATCCAACCTCCGACCTCTAGGATAGAGAAGGTTATGTCAATTACAATGGAGCTGAGCACACTTTGGCATCTCTAGCAAAGTTGTCATCATTTCCATCCATTATCTATTGCTTGAATTTGCACTTATATATGGTAGTTCCTCATCTGGGGATTGTTGTTTTGGTGAACACAGTTCTATGCGTAATTGGGATGCAGCTCTTAAGATCGATGTTTTTTATTATGGAATGTGCAATTAGGACTTGATCTTTCCTTCCATTTGTTTTTCATTCGTTGCTGTTGCTGATGTTATAGAGGCTGCTCCCTTTTTCTTTGAGTGGATTCTCTGTCTCTTGTGTTGAGCATTCATTACTTTTACGGCTTTGATCTTTTTCCTTTCGACAAAATCTTCAATCCAGTTTTTCCCTGCAATTTCAACCCCCTTTTTTCACTCAGATTACGCTTTAGTTGCAATTCTGATAATATTATTGGTTTTGTTCATCAACTACAACTATCTTTCCACATATAGGGATCAGTTGAAGTAACCATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAGCAAATATAAGATGAAGCCTGAGATTAAGAAGAGATGAAAAAAATGTGCACGCTTCTTTGATGGATTTGACTGTTTATATTGTTACAGAAAAATTCTAAAACATCTTGATGTTTTTAGTGGAAATATGGGATTAGGAAATACGATTTGTTTCTCTTATGGATAAGATATTGTCGCTTTCTTTATTAAGTTGAAGAGTGGATGCAAAGTAGGAGGAACCTTTGAAAAGATTGTGGAAGAAACCCGAAGGCTTGATAAAGTTATTGTTTTTTAGGGAAAATTATCCCAAGTTTGGAATAAC ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAG ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAG MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV*
BLAST of Csa1G025880 vs. TrEMBL
Match: A0A0A0LSZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025880 PE=4 SV=1) HSP 1 Score: 226.5 bits (576), Expect = 1.6e-56 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1
BLAST of Csa1G025880 vs. TrEMBL
Match: A0A061GCV7_THECC (Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao GN=TCM_029454 PE=4 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 6.3e-40 Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 1
BLAST of Csa1G025880 vs. TrEMBL
Match: A0A061GKU0_THECC (Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao GN=TCM_029454 PE=4 SV=1) HSP 1 Score: 169.9 bits (429), Expect = 1.8e-39 Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 1
BLAST of Csa1G025880 vs. TrEMBL
Match: A0A0D2RE93_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G045800 PE=4 SV=1) HSP 1 Score: 169.5 bits (428), Expect = 2.4e-39 Identity = 80/112 (71.43%), Postives = 97/112 (86.61%), Query Frame = 1
BLAST of Csa1G025880 vs. TrEMBL
Match: A0A0D2ULJ4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_011G045800 PE=4 SV=1) HSP 1 Score: 167.9 bits (424), Expect = 6.9e-39 Identity = 79/110 (71.82%), Postives = 96/110 (87.27%), Query Frame = 1
BLAST of Csa1G025880 vs. TAIR10
Match: AT4G18372.1 (AT4G18372.1 Small nuclear ribonucleoprotein family protein) HSP 1 Score: 152.5 bits (384), Expect = 1.5e-37 Identity = 76/112 (67.86%), Postives = 87/112 (77.68%), Query Frame = 1
BLAST of Csa1G025880 vs. NCBI nr
Match: gi|778656582|ref|XP_011649337.1| (PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus]) HSP 1 Score: 226.5 bits (576), Expect = 2.4e-56 Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 1
BLAST of Csa1G025880 vs. NCBI nr
Match: gi|659068447|ref|XP_008444468.1| (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]) HSP 1 Score: 217.2 bits (552), Expect = 1.4e-53 Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 1
BLAST of Csa1G025880 vs. NCBI nr
Match: gi|590622413|ref|XP_007025043.1| (Small nuclear ribonucleoprotein family protein isoform 2 [Theobroma cacao]) HSP 1 Score: 171.4 bits (433), Expect = 9.0e-40 Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 1
BLAST of Csa1G025880 vs. NCBI nr
Match: gi|590622409|ref|XP_007025042.1| (Small nuclear ribonucleoprotein family protein isoform 1 [Theobroma cacao]) HSP 1 Score: 169.9 bits (429), Expect = 2.6e-39 Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 1
BLAST of Csa1G025880 vs. NCBI nr
Match: gi|763801914|gb|KJB68852.1| (hypothetical protein B456_011G045800 [Gossypium raimondii]) HSP 1 Score: 169.5 bits (428), Expect = 3.4e-39 Identity = 80/112 (71.43%), Postives = 97/112 (86.61%), Query Frame = 1
The following BLAST results are available for this feature:
GO Assignments
This gene is annotated with the following GO terms.
This gene is associated with the following unigenes:
The following mRNA feature(s) are a part of this gene:
The following transcribed_cluster feature(s) are associated with this gene:
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
The following gene(s) are orthologous to this gene:
The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene: None |