CsGy1G004550 (gene) Cucumber (Gy14) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsGy1G004550
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v2)
Description	Small nuclear ribonucleoprotein
Location	Chr1 : 2900153 .. 2902048 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACACCTATGTTAGTGTATGTAAAAGTGTGTATATTTTTTTGATTACAAGAGGTAGAGATTGTTGAGATGCGTTTTTGATTTAGATCCTATTGTTACTCCTCCCCGCTCTCTCCATCTCTCTCTCTTTCATCCACGAGAAGCCAAGAATCACAATCGGCTCCCAAGTTCCCCTCTGCTCCGCCGTCCCTGTATGACTCTACTTACTCCCTTTTAATTACCTTACCAACATGTTTCCCTTTTTCTACTTACTCCATTTCCTTCGATCCTTCACGATTTCCTGCTCATTCTAAACTGATCCTTTCTTTCTCACCCCCCATCCCATTATTGCCTTTCTTTTAGGCCTCACCATGATTTTCTTTTATGTTTTATTACAAATCCAACCTGAATCAGACCACCCTCTTATTGGGCCAATGGTTCAAGGCCATTTTCATATATTAACTTGGACATTTAGGTGTTTTAAGTTTTAGTCGATGCTTTCCATGATACAATACTGTGCTACTCAACTCAATTTACACATGATTCTCAATTATGAAAACAATGGATTAATCTCTGGCACTTCGATGCTGGGTATATGGTTATTGGTTATTAGTTATTATGATTTGTTGTTTTTTGTGTTTCATACTTCATGACCTGCAGGCTTCTTGATGTATTCTTCTAAAACTAGATTGTTGAATCCCATATGCTTGCTATTGAATGTGGATTCTAATTCCTTACCCATAATTGCTTTGAAACCTGCTTCCATATTCACTTTAGTTTTACCTATTTCCTTTAGTGCAAAGGAAATTGTGCTTTCTTTGGCTTTACCATGTCTTTATCGAAACACTCATGCCTAAAAGAGGCACAACTTGCATTAATTAGCCATGTCAAGAGCTTTAGTTCAATTGAGTAGTTCTCTTCTCTTTATTCCTCCACCTTCCCCCTCTCTCTGTACCTTCCACTGGGCCTCCTTCAATACATCCCTGTTGATCATTGTGAGGGACATTCTTTTGCTGCTGTTTTCTTTTAATATAACAACTGTGAGATGGGAATCCAACCTCCGACCTCTAGGATAGAGAAGGTTATGTCAATTACAATGGAGCTGAGCACACTTTGGCATCTCTAGCAAAGTTGTCATCATTTCCATCCATTATCTATTGCTTGAATTTGCACTTATATATGGTAGTTCCTCATCTGGGGATTGTTGTTTTGGTGAACACAGTTCTATGCGTAATTGGGATGCAGCTCTTAAGATCGATGTTTTTTATTATGGAATGTGCAATTAGGACTTGATCTTTCCTTCCATTTGTTTTTCATTCGTTGCTGTTGCTGATGTTATAGAGGCTGCTCCCTTTTTCTTTGAGTGGATTCTCTGTCTCTTGTGTTGAGCATTCATTACTTTTACGGCTTTGATCTTTTTCCTTTCGACAAAATCTTCAATCCAGTTTTTCCCTGCAATTTCAACCCCCTTTTTTCACTCAGATTACGCTTTAGTTGCAATTCTGATAATATTATTGGTTTTGTTCATCAACTACAACTATCTTTCCACATATAGGGATCAGTTGAAGTAACCATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAG

mRNA sequence

ATGGACACCTATATCCTATTGTTACTCCTCCCCGCTCTCTCCATCTCTCTCTCTTTCATCCACGAGAAGCCAAGAATCACAATCGGCTCCCAAGTTCCCCTCTGCTCCGCCGTCCCTATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAG

Coding sequence (CDS)

ATGGACACCTATATCCTATTGTTACTCCTCCCCGCTCTCTCCATCTCTCTCTCTTTCATCCACGAGAAGCCAAGAATCACAATCGGCTCCCAAGTTCCCCTCTGCTCCGCCGTCCCTATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAG

Protein sequence

MDTYILLLLLPALSISLSFIHEKPRITIGSQVPLCSAVPMEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV

Homology

[Close]

BLAST of CsGy1G004550 vs. NCBI nr
Match: XP_011649337.1 (PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_1G025880 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 2.1e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 40  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 99
           MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 100 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 152
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo])

HSP 1 Score: 218.8 bits (556), Expect = 1.3e-53
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 40  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 99
           MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 100 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 152
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.9 bits (551), Expect = 4.9e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 40  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 99
           MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 100 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 152
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 214.9 bits (546), Expect = 1.8e-52
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 40  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 99
           MEQESGGSMVQ G NVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 100 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 152
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. NCBI nr
Match: XP_023001494.1 (uncharacterized protein LOC111495614 [Cucurbita maxima])

HSP 1 Score: 211.8 bits (538), Expect = 1.6e-51
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 40  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 99
           M+QESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 100 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 152
           ILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. TAIR10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 154.1 bits (388), Expect = 7.0e-38
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 40  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 99
           MEQ +  S     S  E +    D I ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNI
Sbjct: 1   MEQAAERSSTIVASTSEGS--DFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 60

Query: 100 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 152
           ILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Sbjct: 61  ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

[Close]

BLAST of CsGy1G004550 vs. Swiss-Prot
Match: sp|Q55A45|RSMB_DICDI (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 4.0e-06
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 67  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGL 126
           K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+
Sbjct: 9   KMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGM 68

Query: 127 ILIPNSCRVSCHVDSTIDEQLAL 149
           ILI     VS  V++   E+  L
Sbjct: 69  ILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of CsGy1G004550 vs. Swiss-Prot
Match: sp|Q6GQ67|LMD1A_XENLA (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-a PE=3 SV=1)

HSP 1 Score: 50.1 bits (118), Expect = 2.6e-05
Identity = 36/99 (36.36%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 42  QESGGSMVQDGSNVESNPESLDHI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 101
           +E+G S     S  +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPSAGDSDAEPGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 102 LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 140
           L  A E+     S P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CsGy1G004550 vs. Swiss-Prot
Match: sp|A4IGZ4|LSMD1_XENTR (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 49.3 bits (116), Expect = 4.4e-05
Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 42  QESGGSMVQDGSNVESNPESLDHI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 101
           +E+G S        +S+ E+ D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPGAGDSDAEAGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 102 LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 140
           L  A E+     S P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CsGy1G004550 vs. Swiss-Prot
Match: sp|A2BIG9|LSMD1_DANRE (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=naa38 PE=3 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 9.8e-05
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 67  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI 126
           K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +   S S  E R LGL 
Sbjct: 27  KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKS-TDSLSQGEPRVLGLA 86

Query: 127 LIPNSCRVSCHVDS 141
           +IP    VS  V++
Sbjct: 87  MIPGHHVVSIEVET 99

[Close]

BLAST of CsGy1G004550 vs. Swiss-Prot
Match: sp|Q6NU60|LMD1B_XENLA (N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-b PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 3.7e-04
Identity = 33/87 (37.93%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 53  SNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRR 112
           S+VES  ++  H  K+  LL R M I + DGR  +G F C D+  N+IL  A E+     
Sbjct: 21  SDVESG-DTARH--KLESLLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-S 80

Query: 113 SSPSPMEQRCLGLILIPNSCRVSCHVD 140
            S    E R LGL ++P    VS  V+
Sbjct: 81  DSFRIREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CsGy1G004550 vs. TrEMBL
Match: tr|A0A0A0LSZ5|A0A0A0LSZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.4e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 40  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 99
           MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 100 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 152
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. TrEMBL
Match: tr|A0A1S3BAH4|A0A1S3BAH4_CUCME (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 8.5e-54
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 40  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 99
           MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 100 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 152
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsGy1G004550 vs. TrEMBL
Match: tr|A0A061GCV7|A0A061GCV7_THECC (Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_029454 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.4e-40
Identity = 85/118 (72.03%), Postives = 100/118 (84.75%), Query Frame = 0


Query: 34  LCSAVPMEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCI 93
           LC++  MEQE G S++Q GS+ + N  S D + +VRKLLFRRML+GIKDGRFFLG F+CI
Sbjct: 25  LCTS--MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCI 84

Query: 94  DKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 152
           DKQGNIILQD++EYRSTR SSPSPMEQRCLGLILIP SCR SCHVD +I+EQL+LL V
Sbjct: 85  DKQGNIILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLLKV 140

[Close]

BLAST of CsGy1G004550 vs. TrEMBL
Match: tr|A0A061GKU0|A0A061GKU0_THECC (Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_029454 PE=4 SV=1)

HSP 1 Score: 171.8 bits (434), Expect = 1.2e-39
Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 40  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 99
           MEQE G S++Q GS+ + N  S D + +VRKLLFRRML+GIKDGRFFLG F+CIDKQGNI
Sbjct: 1   MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCIDKQGNI 60

Query: 100 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL 150
           ILQD++EYRSTR SSPSPMEQRCLGLILIP SCR SCHVD +I+EQL+LL
Sbjct: 61  ILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLL 110

[Close]

BLAST of CsGy1G004550 vs. TrEMBL
Match: tr|A0A0D2RE93|A0A0D2RE93_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G045800 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 2.0e-39
Identity = 80/112 (71.43%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 40  MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 99
           MEQE G S++Q G++  SN  S D + +VRKLLFRRML+GIKDGRFFLG F+C+DKQGNI
Sbjct: 1   MEQEVGESLIQLGNSDGSNSSSSDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCLDKQGNI 60

Query: 100 ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 152
           ILQD +EYRSTRRSSPSPMEQRCLGL+LIP+SC+ SCHVD +++EQL+LL V
Sbjct: 61  ILQDTIEYRSTRRSSPSPMEQRCLGLVLIPSSCQNSCHVDCSVEEQLSLLKV 112

The following BLAST results are available for this feature:

BLAST of CsGy1G004550 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649337.1	2.1e-56	100.00	PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hy...	[more]
XP_008444477.1	1.3e-53	97.32	PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]	[more]
XP_023520042.1	4.9e-53	94.64	uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]	[more]
XP_022927243.1	1.8e-52	93.75	uncharacterized protein LOC111434149 [Cucurbita moschata]	[more]
XP_023001494.1	1.6e-51	91.96	uncharacterized protein LOC111495614 [Cucurbita maxima]	[more]

BLAST of CsGy1G004550 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18372.1	7.0e-38	67.86	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CsGy1G004550 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q55A45\|RSMB_DICDI	4.0e-06	34.94	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
sp\|Q6GQ67\|LMD1A_XENLA	2.6e-05	36.36	N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]
sp\|A4IGZ4\|LSMD1_XENTR	4.4e-05	35.35	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
sp\|A2BIG9\|LSMD1_DANRE	9.8e-05	39.19	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=n...	[more]
sp\|Q6NU60\|LMD1B_XENLA	3.7e-04	37.93	N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]

BLAST of CsGy1G004550 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSZ5\|A0A0A0LSZ5_CUCSA	1.4e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1	[more]
tr\|A0A1S3BAH4\|A0A1S3BAH4_CUCME	8.5e-54	97.32	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]
tr\|A0A061GCV7\|A0A061GCV7_THECC	2.4e-40	72.03	Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao OX=3...	[more]
tr\|A0A061GKU0\|A0A061GKU0_THECC	1.2e-39	74.55	Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao OX=3...	[more]
tr\|A0A0D2RE93\|A0A0D2RE93_GOSRA	2.0e-39	71.43	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G045800 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0031417	NatC complex

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR034110	LSMD1
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0031417	NatC complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsGy1G004550.1	CsGy1G004550.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber Gy14 genome (v2)
Date Performed: 2018-09-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 69..128 e-value: 2.6E-7 score: 30.1
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 62..145 e-value: 5.4E-17 score: 63.3
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 57..150
None	No IPR available	PANTHER	PTHR10701:SF9	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN	coord: 57..150
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 67..139 e-value: 3.0042E-25 score: 92.2349
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 64..140

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsGy1G004550	Cla019570	Watermelon (97103) v1	cgybwmB030
CsGy1G004550	Csa1G025880	Cucumber (Chinese Long) v2	cgybcuB001
CsGy1G004550	MELO3C002751	Melon (DHL92) v3.5.1	cgybmeB033
CsGy1G004550	ClCG03G006700	Watermelon (Charleston Gray)	cgybwcgB050
CsGy1G004550	CSPI01G04670	Wild cucumber (PI 183967)	cgybcpiB001
CsGy1G004550	Lsi02G009030	Bottle gourd (USVL1VR-Ls)	cgyblsiB025
CsGy1G004550	CsaV3_1G004630	Cucumber (Chinese Long) v3	cgybcucB002
CsGy1G004550	Cla97C03G057970	Watermelon (97103) v2	cgybwmbB050
CsGy1G004550	Bhi08G001673	Wax gourd	cgybwgoB062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsGy1G004550	Watermelon (97103) v2	cgybwmbB047
CsGy1G004550	Wax gourd	cgybwgoB059
CsGy1G004550	Bottle gourd (USVL1VR-Ls)	cgyblsiB034
CsGy1G004550	Melon (DHL92) v3.5.1	cgybmeB030
CsGy1G004550	Watermelon (Charleston Gray)	cgybwcgB049
CsGy1G004550	Watermelon (97103) v1	cgybwmB029