CsaV3_1G004630 (gene) Cucumber (Chinese Long) v3 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CsaV3_1G004630
Type	gene
Organism	Cucumis sativus (Cucumber (Chinese Long) v3)
Description	Small nuclear ribonucleoprotein family protein
Location	chr1 : 2928736 .. 2931065 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAAATTGAAAACTAATAATAAAAAGAAAATGTAGATAGGAAAGAAATAAATTTGAATATAAAAATAGTGTGGATAGAGATTAGGGTTTAAAAACCAAATGGACACCTATGTTAGTGTATGTAAAAGTGTGTATATTTTTTTGATTACAAGAGGTAGAGATTGTTGAGATGCGTTTTTGATTTAGATCCTATTGTTACTCCTCCCCGCTCTCTCCATCTCTCTCTCTTTCATCCACGAGAAGCCAAGAATCACAATCGGCTCCCAAGTTCCCCTCTGCTCCGCCGTCCCTGTATGACTCTACTTACTCCCTTTTAATTACCTTACCAACATGTTTCCCTTTTTCTACTTACTCCATTTCCTTCGATCCTTCACGATTTCCTGCTCATTCTAAACTGATCCTTTCTTTCTCACCCCCCATCCCATTATTGCCTTTCTTTTAGGCCTCACCATGATTTTCTTTTATGTTTTATTACAAATCCAACCTGAATCAGACCACCCTCTTATTGGGCCAATGGTTCAAGGCCATTTTCATATATTAACTTGGACATTTAGGTGTTTTAAGTTTTAGTCGATGCTTTCCATGATACAATACTGTGCTACTCAACTCAATTTACACATGATTCTCAATTATGAAAACAATGGATTAATCTCTGGCACTTCGATGCTGGGTATATGGTTATTGGTTATTAGTTATTATGATTTGTTGTTTTTTGTGTTTCATACTTCATGACCTGCAGGCTTCTTGATGTATTCTTCTAAAACTAGATTGTTGAATCCCATATGCTTGCTATTGAATGTGGATTCTAATTCCTTACCCATAATTGCTTTGAAACCTGCTTCCATATTCACTTTAGTTTTACCTATTTCCTTTAGTGCAAAGGAAATTGTGCTTTCTTTGGCTTTACCATGTCTTTATCGAAACACTCATGCCTAAAAGAGGCACAACTTGCATTAATTAGCCATGTCAAGAGCTTTAGTTCAATTGAGTAGTTCTCTTCTCTTTATTCCTCCACCTTCCCCCTCTCTCTGTACCTTCCACTGGGCCTCCTTCAATACATCCCTGTTGATCATTGTGAGGGACATTCTTTTGCTGCTGTTTTCTTTTAATATAACAACTGTGAGATGGGAATCCAACCTCCGACCTCTAGGATAGAGAAGGTTATGTCAATTACAATGGAGCTGAGCACACTTTGGCATCTCTAGCAAAGTTGTCATCATTTCCATCCATTATCTATTGCTTGAATTTGCACTTATATATGGTAGTTCCTCATCTGGGGATTGTTGTTTTGGTGAACACAGTTCTATGCGTAATTGGGATGCAGCTCTTAAGATCGATGTTTTTTATTATGGAATGTGCAATTAGGACTTGATCTTTCCTTCCATTTGTTTTTCATTCGTTGCTGTTGCTGATGTTATAGAGGCTGCTCCCTTTTTCTTTGAGTGGATTCTCTGTCTCTTGTGTTGAGCATTCATTACTTTTACGGCTTTGATCTTTTTCCTTTCGACAAAATCTTCAATCCAGTTTTTCCCTGCAATTTCAACCCCCTTTTTTCACTCAGATTACGCTTTAGTTGCAATTCTGATAATATTATTGGTTTTGTTCATCAACTACAACTATCTTTCCACATATAGGGATCAGTTGAAGTAACCATAGATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAGCAAATATAAGATGAAGCCTGAGATTAAGAAGAGATGAAAAAAATGTGCACGCTTCTTTGATGGATTTGACTGTTTATATTGTTACAGAAAAATTCTAAAACATCTTGATGTTTTTAGTGGAAATATGGGATTAGGAAATACGATTTGTTTCTCTTATGGATAAGATATTGTCGCTTTCTTTATTAAGTTGAAGAGTGGATGCAAAGTAGGAGGAACCTTTGAAAAGATTGTGGAAGAAACCCGAAGGCTTGATAAAGTTATTGTTTTTTAGGGAAAATTATCCCAAGTTTGGAATAACATGTGTTTCGTTAAAGTTTAAAAGAACGTACCTTTCG

mRNA sequence

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAG

Coding sequence (CDS)

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGATGGGAGCAATGTTGAGTCTAACCCAGAGAGTTTAGATCACATAGGAAAGGTGAGAAAGCTGCTGTTTCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGAAACTTTTACTGCATTGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAG

Protein sequence

MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV

Homology

[Close]

BLAST of CsaV3_1G004630 vs. NCBI nr
Match: XP_011649337.1 (PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_1G025880 [Cucumis sativus])

HSP 1 Score: 228.0 bits (580), Expect = 1.6e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsaV3_1G004630 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo])

HSP 1 Score: 218.8 bits (556), Expect = 9.6e-54
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsaV3_1G004630 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 216.9 bits (551), Expect = 3.6e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsaV3_1G004630 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 214.9 bits (546), Expect = 1.4e-52
Identity = 105/112 (93.75%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQ G NVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsaV3_1G004630 vs. NCBI nr
Match: XP_023001494.1 (uncharacterized protein LOC111495614 [Cucurbita maxima])

HSP 1 Score: 211.8 bits (538), Expect = 1.2e-51
Identity = 103/112 (91.96%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           M+QESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRML+GIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsaV3_1G004630 vs. TAIR10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 154.1 bits (388), Expect = 5.3e-38
Identity = 76/112 (67.86%), Postives = 89/112 (79.46%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQ +  S     S  E +    D I ++RKLLFR+ML+GIKDGRFFLGNF+CIDKQGNI
Sbjct: 1   MEQAAERSSTIVASTSEGS--DFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Sbjct: 61  ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

[Close]

BLAST of CsaV3_1G004630 vs. Swiss-Prot
Match: sp|Q55A45|RSMB_DICDI (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 53.5 bits (127), Expect = 1.7e-06
Identity = 29/83 (34.94%), Postives = 45/83 (54.22%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQ-RCLGL 87
           K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ R LG+
Sbjct: 9   KMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEKRTLGM 68

Query: 88  ILIPNSCRVSCHVDSTIDEQLAL 110
           ILI     VS  V++   E+  L
Sbjct: 69  ILIRGETVVSMSVEAPPPEEAKL 91

[Close]

BLAST of CsaV3_1G004630 vs. Swiss-Prot
Match: sp|Q6GQ67|LMD1A_XENLA (N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-a PE=3 SV=1)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 36/99 (36.36%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 3   QESGGSMVQDGSNVESNPESLDHI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 62
           +E+G S     S  +S+ E  D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPSAGDSDAEPGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 63  LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 101
           L  A E+     S P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CsaV3_1G004630 vs. Swiss-Prot
Match: sp|A4IGZ4|LSMD1_XENTR (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 48.9 bits (115), Expect = 4.3e-05
Identity = 35/99 (35.35%), Postives = 49/99 (49.49%), Query Frame = 0


Query: 3   QESGGSMVQDGSNVESNPESLDHI-GKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNII 62
           +E+G S        +S+ E+ D    K+  LL R M I + DGR  +G F C D+  N+I
Sbjct: 6   EENGCSRQSSPGAGDSDAEAGDTARHKLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVI 65

Query: 63  LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVD 101
           L  A E+     S P   E R LGL ++P    VS  V+
Sbjct: 66  LGSAQEFLRPSDSFP-VREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CsaV3_1G004630 vs. Swiss-Prot
Match: sp|A2BIG9|LSMD1_DANRE (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=naa38 PE=3 SV=1)

HSP 1 Score: 48.5 bits (114), Expect = 5.6e-05
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 28  KVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI 87
           K+  LL + M I + DGR  +G F C D+  N+IL  A E+  +   S S  E R LGL 
Sbjct: 27  KLENLLNKSMRIRMTDGRTLVGLFLCTDRDCNVILGSAQEFLKS-TDSLSQGEPRVLGLA 86

Query: 88  LIPNSCRVSCHVDS 102
           +IP    VS  V++
Sbjct: 87  MIPGHHVVSIEVET 99

[Close]

BLAST of CsaV3_1G004630 vs. Swiss-Prot
Match: sp|Q6NU60|LMD1B_XENLA (N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355 GN=naa38-b PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-04
Identity = 33/87 (37.93%), Postives = 45/87 (51.72%), Query Frame = 0


Query: 14  SNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNIILQDAVEYRSTRR 73
           S+VES  ++  H  K+  LL R M I + DGR  +G F C D+  N+IL  A E+     
Sbjct: 21  SDVESG-DTARH--KLESLLNRNMRIQMTDGRSLIGCFLCTDRDCNVILGSAQEFLRP-S 80

Query: 74  SSPSPMEQRCLGLILIPNSCRVSCHVD 101
            S    E R LGL ++P    VS  V+
Sbjct: 81  DSFRIREPRVLGLAMVPGHHIVSIQVE 103

[Close]

BLAST of CsaV3_1G004630 vs. TrEMBL
Match: tr|A0A0A0LSZ5|A0A0A0LSZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 1.0e-56
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsaV3_1G004630 vs. TrEMBL
Match: tr|A0A1S3BAH4|A0A1S3BAH4_CUCME (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 6.3e-54
Identity = 109/112 (97.32%), Postives = 109/112 (97.32%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQESGGSMVQDGSN ESN ESLD IGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

[Close]

BLAST of CsaV3_1G004630 vs. TrEMBL
Match: tr|A0A061GCV7|A0A061GCV7_THECC (Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_029454 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 4.0e-40
Identity = 83/112 (74.11%), Postives = 96/112 (85.71%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQE G S++Q GS+ + N  S D + +VRKLLFRRML+GIKDGRFFLG F+CIDKQGNI
Sbjct: 29  MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCIDKQGNI 88

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD++EYRSTR SSPSPMEQRCLGLILIP SCR SCHVD +I+EQL+LL V
Sbjct: 89  ILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLLKV 140

[Close]

BLAST of CsaV3_1G004630 vs. TrEMBL
Match: tr|A0A061GKU0|A0A061GKU0_THECC (Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_029454 PE=4 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 1.2e-39
Identity = 82/110 (74.55%), Postives = 95/110 (86.36%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQE G S++Q GS+ + N  S D + +VRKLLFRRML+GIKDGRFFLG F+CIDKQGNI
Sbjct: 1   MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL 111
           ILQD++EYRSTR SSPSPMEQRCLGLILIP SCR SCHVD +I+EQL+LL
Sbjct: 61  ILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLL 110

[Close]

BLAST of CsaV3_1G004630 vs. TrEMBL
Match: tr|A0A0D2RE93|A0A0D2RE93_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G045800 PE=4 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.5e-39
Identity = 80/112 (71.43%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60
           MEQE G S++Q G++  SN  S D + +VRKLLFRRML+GIKDGRFFLG F+C+DKQGNI
Sbjct: 1   MEQEVGESLIQLGNSDGSNSSSSDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCLDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD +EYRSTRRSSPSPMEQRCLGL+LIP+SC+ SCHVD +++EQL+LL V
Sbjct: 61  ILQDTIEYRSTRRSSPSPMEQRCLGLVLIPSSCQNSCHVDCSVEEQLSLLKV 112

The following BLAST results are available for this feature:

BLAST of CsaV3_1G004630 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011649337.1	1.6e-56	100.00	PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hy...	[more]
XP_008444477.1	9.6e-54	97.32	PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo]	[more]
XP_023520042.1	3.6e-53	94.64	uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo]	[more]
XP_022927243.1	1.4e-52	93.75	uncharacterized protein LOC111434149 [Cucurbita moschata]	[more]
XP_023001494.1	1.2e-51	91.96	uncharacterized protein LOC111495614 [Cucurbita maxima]	[more]

BLAST of CsaV3_1G004630 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G18372.1	5.3e-38	67.86	Small nuclear ribonucleoprotein family protein	[more]

BLAST of CsaV3_1G004630 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q55A45\|RSMB_DICDI	1.7e-06	34.94	Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum...	[more]
sp\|Q6GQ67\|LMD1A_XENLA	2.5e-05	36.36	N-alpha-acetyltransferase 38-A, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]
sp\|A4IGZ4\|LSMD1_XENTR	4.3e-05	35.35	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83...	[more]
sp\|A2BIG9\|LSMD1_DANRE	5.6e-05	39.19	N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Danio rerio OX=7955 GN=n...	[more]
sp\|Q6NU60\|LMD1B_XENLA	2.8e-04	37.93	N-alpha-acetyltransferase 38-B, NatC auxiliary subunit OS=Xenopus laevis OX=8355...	[more]

BLAST of CsaV3_1G004630 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A0A0LSZ5\|A0A0A0LSZ5_CUCSA	1.0e-56	100.00	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1	[more]
tr\|A0A1S3BAH4\|A0A1S3BAH4_CUCME	6.3e-54	97.32	uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=...	[more]
tr\|A0A061GCV7\|A0A061GCV7_THECC	4.0e-40	74.11	Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao OX=3...	[more]
tr\|A0A061GKU0\|A0A061GKU0_THECC	1.2e-39	74.55	Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao OX=3...	[more]
tr\|A0A0D2RE93\|A0A0D2RE93_GOSRA	1.5e-39	71.43	Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G045800 PE=4 ...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **Cellular Component**
Term	Definition
GO:0031417	NatC complex

Vocabulary: **INTERPRO**
Term	Definition
IPR010920	LSM_dom_sf
IPR034110	LSMD1
IPR001163	LSM_dom_euk/arc

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0030529	intracellular ribonucleoprotein complex
cellular_component	GO:0019013	viral nucleocapsid
cellular_component	GO:0031417	NatC complex
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CsaV3_1G004630.1	CsaV3_1G004630.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber chineselong genome (v3)
Date Performed: 2019-03-04


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	GENE3D	G3DSA:2.30.30.100		coord: 23..106 e-value: 2.3E-17 score: 64.5
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..22
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..21
None	No IPR available	PANTHER	PTHR10701:SF9	SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEIN	coord: 19..111
None	No IPR available	PANTHER	PTHR10701	SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N	coord: 19..111
IPR001163	LSM domain, eukaryotic/archaea-type	PFAM	PF01423	LSM	coord: 30..89 e-value: 1.2E-7 score: 31.2
IPR034110	LSM domain containing 1	CDD	cd06168	LSMD1	coord: 28..100 e-value: 1.35801E-25 score: 91.8497
IPR010920	LSM domain superfamily	SUPERFAMILY	SSF50182	Sm-like ribonucleoproteins	coord: 25..101

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CsaV3_1G004630	CSPI01G04670	Wild cucumber (PI 183967)	cpicucB001
CsaV3_1G004630	Cucsa.111840	Cucumber (Gy14) v1	cgycucB143
CsaV3_1G004630	CsGy1G004550	Cucumber (Gy14) v2	cgybcucB002
CsaV3_1G004630	Cla019570	Watermelon (97103) v1	cucwmB035
CsaV3_1G004630	MELO3C002751	Melon (DHL92) v3.5.1	cucmeB036
CsaV3_1G004630	ClCG03G006700	Watermelon (Charleston Gray)	cucwcgB059
CsaV3_1G004630	Lsi02G009030	Bottle gourd (USVL1VR-Ls)	cuclsiB030
CsaV3_1G004630	Cla97C03G057970	Watermelon (97103) v2	cucwmbB051
CsaV3_1G004630	Bhi08G001673	Wax gourd	cucwgoB068

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CsaV3_1G004630	Cucurbita maxima (Rimu)	cmacucB0060
CsaV3_1G004630	Cucurbita maxima (Rimu)	cmacucB0101
CsaV3_1G004630	Cucurbita moschata (Rifu)	cmocucB0046
CsaV3_1G004630	Cucurbita moschata (Rifu)	cmocucB0091
CsaV3_1G004630	Cucurbita pepo (Zucchini)	cpecucB0444
CsaV3_1G004630	Cucurbita pepo (Zucchini)	cpecucB0815
CsaV3_1G004630	Bottle gourd (USVL1VR-Ls)	cuclsiB082
CsaV3_1G004630	Melon (DHL92) v3.6.1	cucmedB051
CsaV3_1G004630	Watermelon (Charleston Gray)	cucwcgB089
CsaV3_1G004630	Watermelon (97103) v1	cucwmB106