CU166788 (transcribed_cluster) Cucumber (Chinese Long) v2

NameCU166788
Typetranscribed_cluster
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionSmall nuclear ribonucleoprotein
LocationChr1 : 2903756 .. 2903998 (-)
Sequence length243
The following sequences are available for this feature:

transcribed_cluster sequence

TCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGGCGTAGCTCACCTTCTCCAATGGAACAACGGTGCCTTGGTCTTATTCTTATACCCAACTCTTGCCGTGTATCCTGTCATGTGGATAGTACCATTGATGAACAATTGGCATTGCTATCAGTTTAGCAAATATAAGATGAAGCCTGAGATTAAGAAGAGATAGAAAAAAATGTGCACGCTTCTTTGATGGATTTGACTGTTTATATTGTTA
BLAST of CU166788 vs. TrEMBL
Match: A0A0A0LSZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 6.7e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 3

Query: 3   LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 62
           LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 62  LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

Query: 63  122
           
Sbjct: 122 112

Query: 123 156
           
Sbjct: 182 112

BLAST of CU166788 vs. TrEMBL
Match: I3SG12_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 94.0 bits (232), Expect = 9.0e-17
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 3

Query: 3   LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 62
           LQDAVEYRSTRRSSPSPMEQRCLGLILIP+SCR +CHVD +IDEQL+LLS+
Sbjct: 58  LQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRATCHVDCSIDEQLSLLSL 108

Query: 63  122
           
Sbjct: 118 108

Query: 123 156
           
Sbjct: 178 108

BLAST of CU166788 vs. TrEMBL
Match: A0A067G741_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033666mg PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 3

Query: 3   LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV*Q 62
           LQDAVEYRSTRR+SPSPMEQRCLG+ILIP+SCR SCHVD +IDEQL+LL V Q
Sbjct: 62  LQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114

Query: 63  122
           
Sbjct: 122 114

Query: 123 162
           
Sbjct: 182 114

BLAST of CU166788 vs. TrEMBL
Match: W9QV54_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_005333 PE=4 SV=1)

HSP 1 Score: 93.2 bits (230), Expect = 1.5e-16
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 3

Query: 3   LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 62
           LQDAVEYRSTRRSSPSPMEQRCLGLILIP+SCR SCHVD +++EQL+LLS+
Sbjct: 54  LQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRSSCHVDCSVEEQLSLLSI 104

Query: 63  122
           
Sbjct: 114 104

Query: 123 156
           
Sbjct: 174 104

BLAST of CU166788 vs. TrEMBL
Match: A0A059C635_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02425 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 2.0e-16
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 3

Query: 3   LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV*Q 62
           LQDAVEYRSTRRSSPSPMEQRCLGLILIP+SCR SCHVD  I+EQL+LLS+ Q
Sbjct: 63  LQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRTSCHVDCFIEEQLSLLSLNQ 115

Query: 63  122
           
Sbjct: 123 115

Query: 123 162
           
Sbjct: 183 115

BLAST of CU166788 vs. NCBI nr
Match: gi|778656582|ref|XP_011649337.1| (PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus])

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 3

Query: 3   LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 62
           LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 62  LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

Query: 63  122
           
Sbjct: 122 112

Query: 123 156
           
Sbjct: 182 112

BLAST of CU166788 vs. NCBI nr
Match: gi|659068447|ref|XP_008444468.1| (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo])

HSP 1 Score: 106.7 bits (265), Expect = 1.9e-20
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 3

Query: 3   LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 62
           LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 62  LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

Query: 63  122
           
Sbjct: 122 112

Query: 123 156
           
Sbjct: 182 112

BLAST of CU166788 vs. NCBI nr
Match: gi|388502276|gb|AFK39204.1| (unknown [Lotus japonicus])

HSP 1 Score: 96.3 bits (238), Expect = 2.6e-17
Identity = 44/51 (86.27%), Postives = 49/51 (96.08%), Query Frame = 3

Query: 3   LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 62
           LQDAVEYRSTRRSSPSPMEQRCLGLILIP+SCR +CHVD +IDEQL+LLS+
Sbjct: 58  LQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRATCHVDCSIDEQLSLLSL 108

Query: 63  122
           
Sbjct: 118 108

Query: 123 156
           
Sbjct: 178 108

BLAST of CU166788 vs. NCBI nr
Match: gi|703089800|ref|XP_010093906.1| (hypothetical protein L484_005333 [Morus notabilis])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 43/51 (84.31%), Postives = 49/51 (96.08%), Query Frame = 3

Query: 3   LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 62
           LQDAVEYRSTRRSSPSPMEQRCLGLILIP+SCR SCHVD +++EQL+LLS+
Sbjct: 54  LQDAVEYRSTRRSSPSPMEQRCLGLILIPSSCRSSCHVDCSVEEQLSLLSI 104

Query: 63  122
           
Sbjct: 114 104

Query: 123 156
           
Sbjct: 174 104

BLAST of CU166788 vs. NCBI nr
Match: gi|568827362|ref|XP_006468032.1| (PREDICTED: uncharacterized protein LOC102616346 [Citrus sinensis])

HSP 1 Score: 95.5 bits (236), Expect = 4.4e-17
Identity = 44/53 (83.02%), Postives = 49/53 (92.45%), Query Frame = 3

Query: 3   LQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV*Q 62
           LQDAVEYRSTRR+SPSPMEQRCLG+ILIP+SCR SCHVD +IDEQL+LL V Q
Sbjct: 62  LQDAVEYRSTRRTSPSPMEQRCLGIILIPSSCRTSCHVDCSIDEQLSLLKVDQ 114

Query: 63  122
           
Sbjct: 122 114

Query: 123 162
           
Sbjct: 182 114

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0LSZ5_CUCSA6.7e-20100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G025880 PE=4 SV=1[more]
I3SG12_LOTJA9.0e-1786.27Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
A0A067G741_CITSI1.5e-1683.02Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g033666mg PE=4 SV=1[more]
W9QV54_9ROSA1.5e-1684.31Uncharacterized protein OS=Morus notabilis GN=L484_005333 PE=4 SV=1[more]
A0A059C635_EUCGR2.0e-1684.91Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_E02425 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|778656582|ref|XP_011649337.1|1.9e-20100.00PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus][more]
gi|659068447|ref|XP_008444468.1|1.9e-20100.00PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo][more]
gi|388502276|gb|AFK39204.1|2.6e-1786.27unknown [Lotus japonicus][more]
gi|703089800|ref|XP_010093906.1|4.4e-1784.31hypothetical protein L484_005333 [Morus notabilis][more]
gi|568827362|ref|XP_006468032.1|4.4e-1783.02PREDICTED: uncharacterized protein LOC102616346 [Citrus sinensis][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Csa1G025880Csa1G025880gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
H0105069H0105069EST