Carg25443 (gene) Silver-seed gourd

NameCarg25443
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionSmall nuclear ribonucleoprotein family protein
LocationCucurbita_argyrosperma_scaffold_256 : 18941 .. 19279 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

mRNA sequence

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

Coding sequence (CDS)

ATGGAACAAGAATCAGGAGGATCCATGGTTCAGGTTGGTAGCAATGTTGAGTCTAATCCAGACAGTTTAGATCGTGTAGGAAAGGTGAGAAAGCTTCTGTTCCGTCGAATGCTCATAGGTATTAAAGATGGAAGGTTTTTCTTGGGCTCCTTTTACTGCATGGACAAGCAAGGAAATATCATCCTTCAAGATGCAGTAGAGTATCGTAGCACTCGACGTAGCTCACCCTCTCCGATGGAACAACGGTGCCTAGGTCTTATTCTTATCCCTAACTCTTGCCGTGTATCTTGTCATGTAGATAGTACCATTGATGAACAATTGGCGCTGTTATCTGTTTAG

Protein sequence

MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
BLAST of Carg25443 vs. NCBI nr
Match: XP_023520042.1 (uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 225.3 bits (573), Expect = 1.0e-55
Identity = 112/112 (100.00%), Postives = 112/112 (100.00%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

BLAST of Carg25443 vs. NCBI nr
Match: XP_022927243.1 (uncharacterized protein LOC111434149 [Cucurbita moschata])

HSP 1 Score: 223.4 bits (568), Expect = 3.9e-55
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQVG NVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MEQESGGSMVQVGCNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

BLAST of Carg25443 vs. NCBI nr
Match: XP_023001494.1 (uncharacterized protein LOC111495614 [Cucurbita maxima])

HSP 1 Score: 220.3 bits (560), Expect = 3.3e-54
Identity = 109/112 (97.32%), Postives = 111/112 (99.11%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           M+QESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRML+GIKDGRFFLGSFYCMDKQGNI
Sbjct: 1   MDQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLLGIKDGRFFLGSFYCMDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRST RSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTWRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

BLAST of Carg25443 vs. NCBI nr
Match: XP_011649337.1 (PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hypothetical protein Csa_1G025880 [Cucumis sativus])

HSP 1 Score: 216.1 bits (549), Expect = 6.1e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

BLAST of Carg25443 vs. NCBI nr
Match: XP_008444477.1 (PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo])

HSP 1 Score: 209.9 bits (533), Expect = 4.4e-51
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSN ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

BLAST of Carg25443 vs. TAIR10
Match: AT4G18372.1 (Small nuclear ribonucleoprotein family protein)

HSP 1 Score: 152.5 bits (384), Expect = 1.5e-37
Identity = 74/112 (66.07%), Postives = 90/112 (80.36%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQ +  S   V S  E +    D + ++RKLLFR+ML+GIKDGRFFLG+F+C+DKQGNI
Sbjct: 1   MEQAAERSSTIVASTSEGS--DFDPISRLRKLLFRQMLVGIKDGRFFLGNFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD VEYRS RRSSPSP EQRCLG+ILIP+SCR SCHVD +IDEQL+L+ +
Sbjct: 61  ILQDTVEYRSIRRSSPSPTEQRCLGMILIPSSCRTSCHVDCSIDEQLSLIQL 110

BLAST of Carg25443 vs. Swiss-Prot
Match: sp|Q55A45|RSMB_DICDI (Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum OX=44689 GN=snrpb PE=3 SV=1)

HSP 1 Score: 52.4 bits (124), Expect = 3.8e-06
Identity = 29/88 (32.95%), Postives = 47/88 (53.41%), Query Frame = 0

Query: 23  LDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQ- 82
           + +  K+ + +  RM + I+DGR  +G F   DK  N+++ DA E+R  R+      E+ 
Sbjct: 4   MPKSSKMLQYINYRMRVTIQDGRVIVGRFLAFDKHMNVVICDAEEFRRIRQKGKEDREEK 63

Query: 83  RCLGLILIPNSCRVSCHVDSTIDEQLAL 110
           R LG+ILI     VS  V++   E+  L
Sbjct: 64  RTLGMILIRGETVVSMSVEAPPPEEAKL 91

BLAST of Carg25443 vs. Swiss-Prot
Match: sp|A4IGZ4|LSMD1_XENTR (N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=8364 GN=naa38 PE=3 SV=2)

HSP 1 Score: 49.7 bits (117), Expect = 2.5e-05
Identity = 29/73 (39.73%), Postives = 38/73 (52.05%), Query Frame = 0

Query: 28  KVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTRRSSPSPMEQRCLGLI 87
           K+  LL R M I + DGR  +G F C D+  N+IL  A E+     S P   E R LGL 
Sbjct: 32  KLESLLNRNMRIEMTDGRSLIGCFLCTDRDCNVILGSAQEFLRPSDSFP-VREPRVLGLA 91

Query: 88  LIPNSCRVSCHVD 101
           ++P    VS  V+
Sbjct: 92  MVPGHHIVSIQVE 103

BLAST of Carg25443 vs. Swiss-Prot
Match: sp|Q17QN3|RSMN_BOVIN (Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0

Query: 26  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 85
           VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHVD 101
           E+R LGL+L+     VS  V+
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

BLAST of Carg25443 vs. Swiss-Prot
Match: sp|P63162|RSMN_HUMAN (Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=SNRPN PE=1 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0

Query: 26  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 85
           VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHVD 101
           E+R LGL+L+     VS  V+
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

BLAST of Carg25443 vs. Swiss-Prot
Match: sp|Q60HD3|RSMN_MACFA (Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9541 GN=SNRPN PE=2 SV=1)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-05
Identity = 31/81 (38.27%), Postives = 43/81 (53.09%), Query Frame = 0

Query: 26  VGKVRKLLFR---RMLIGIKDGRFFLGSFYCMDKQGNIILQDAVEYRSTR---RSSPSPM 85
           VGK  K+L     RM   ++DGR F+G+F   DK  N+IL D  E+R  +      P   
Sbjct: 3   VGKSSKMLQHIDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNAKQPERE 62

Query: 86  EQRCLGLILIPNSCRVSCHVD 101
           E+R LGL+L+     VS  V+
Sbjct: 63  EKRVLGLVLLRGENLVSMTVE 83

BLAST of Carg25443 vs. TrEMBL
Match: tr|A0A0A0LSZ5|A0A0A0LSZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1)

HSP 1 Score: 216.1 bits (549), Expect = 4.1e-53
Identity = 106/112 (94.64%), Postives = 110/112 (98.21%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSNVESNP+SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNVESNPESLDHIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

BLAST of Carg25443 vs. TrEMBL
Match: tr|A0A1S3BAH4|A0A1S3BAH4_CUCME (uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.9e-51
Identity = 104/112 (92.86%), Postives = 108/112 (96.43%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQESGGSMVQ GSN ESN +SLD +GKVRKLLFRRMLIGIKDGRFFLG+FYC+DKQGNI
Sbjct: 1   MEQESGGSMVQDGSNFESNSESLDCIGKVRKLLFRRMLIGIKDGRFFLGNFYCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV
Sbjct: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 112

BLAST of Carg25443 vs. TrEMBL
Match: tr|A0A061GCV7|A0A061GCV7_THECC (Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao OX=3641 GN=TCM_029454 PE=4 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 2.3e-40
Identity = 83/112 (74.11%), Postives = 98/112 (87.50%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQE G S++Q+GS+ + N  S D V +VRKLLFRRML+GIKDGRFFLG+F+C+DKQGNI
Sbjct: 29  MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCIDKQGNI 88

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD++EYRSTR SSPSPMEQRCLGLILIP SCR SCHVD +I+EQL+LL V
Sbjct: 89  ILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLLKV 140

BLAST of Carg25443 vs. TrEMBL
Match: tr|A0A0D2RE93|A0A0D2RE93_GOSRA (Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G045800 PE=4 SV=1)

HSP 1 Score: 172.9 bits (437), Expect = 3.9e-40
Identity = 81/112 (72.32%), Postives = 99/112 (88.39%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQE G S++Q+G++  SN  S D V +VRKLLFRRML+GIKDGRFFLG+F+C+DKQGNI
Sbjct: 1   MEQEVGESLIQLGNSDGSNSSSSDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCLDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALLSV 113
           ILQD +EYRSTRRSSPSPMEQRCLGL+LIP+SC+ SCHVD +++EQL+LL V
Sbjct: 61  ILQDTIEYRSTRRSSPSPMEQRCLGLVLIPSSCQNSCHVDCSVEEQLSLLKV 112

BLAST of Carg25443 vs. TrEMBL
Match: tr|A0A061GKU0|A0A061GKU0_THECC (Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao OX=3641 GN=TCM_029454 PE=4 SV=1)

HSP 1 Score: 172.6 bits (436), Expect = 5.2e-40
Identity = 82/110 (74.55%), Postives = 97/110 (88.18%), Query Frame = 0

Query: 1   MEQESGGSMVQVGSNVESNPDSLDRVGKVRKLLFRRMLIGIKDGRFFLGSFYCMDKQGNI 60
           MEQE G S++Q+GS+ + N  S D V +VRKLLFRRML+GIKDGRFFLG+F+C+DKQGNI
Sbjct: 1   MEQEVGESLIQLGSSDDPNSSSTDPVTRVRKLLFRRMLVGIKDGRFFLGTFHCIDKQGNI 60

Query: 61  ILQDAVEYRSTRRSSPSPMEQRCLGLILIPNSCRVSCHVDSTIDEQLALL 111
           ILQD++EYRSTR SSPSPMEQRCLGLILIP SCR SCHVD +I+EQL+LL
Sbjct: 61  ILQDSIEYRSTRHSSPSPMEQRCLGLILIPFSCRTSCHVDCSINEQLSLL 110

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_023520042.11.0e-55100.00uncharacterized protein LOC111783348 [Cucurbita pepo subsp. pepo][more]
XP_022927243.13.9e-5599.11uncharacterized protein LOC111434149 [Cucurbita moschata][more]
XP_023001494.13.3e-5497.32uncharacterized protein LOC111495614 [Cucurbita maxima][more]
XP_011649337.16.1e-5394.64PREDICTED: uncharacterized protein LOC101206200 [Cucumis sativus] >KGN63907.1 hy... [more]
XP_008444477.14.4e-5192.86PREDICTED: uncharacterized protein LOC103487784 [Cucumis melo][more]
Match NameE-valueIdentityDescription
AT4G18372.11.5e-3766.07Small nuclear ribonucleoprotein family protein[more]
Match NameE-valueIdentityDescription
sp|Q55A45|RSMB_DICDI3.8e-0632.95Small nuclear ribonucleoprotein-associated protein B OS=Dictyostelium discoideum... [more]
sp|A4IGZ4|LSMD1_XENTR2.5e-0539.73N-alpha-acetyltransferase 38, NatC auxiliary subunit OS=Xenopus tropicalis OX=83... [more]
sp|Q17QN3|RSMN_BOVIN3.3e-0538.27Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus OX=9913 GN=SN... [more]
sp|P63162|RSMN_HUMAN3.3e-0538.27Small nuclear ribonucleoprotein-associated protein N OS=Homo sapiens OX=9606 GN=... [more]
sp|Q60HD3|RSMN_MACFA3.3e-0538.27Small nuclear ribonucleoprotein-associated protein N OS=Macaca fascicularis OX=9... [more]
Match NameE-valueIdentityDescription
tr|A0A0A0LSZ5|A0A0A0LSZ5_CUCSA4.1e-5394.64Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G025880 PE=4 SV=1[more]
tr|A0A1S3BAH4|A0A1S3BAH4_CUCME2.9e-5192.86uncharacterized protein LOC103487784 OS=Cucumis melo OX=3656 GN=LOC103487784 PE=... [more]
tr|A0A061GCV7|A0A061GCV7_THECC2.3e-4074.11Small nuclear ribonucleoprotein family protein isoform 2 OS=Theobroma cacao OX=3... [more]
tr|A0A0D2RE93|A0A0D2RE93_GOSRA3.9e-4072.32Uncharacterized protein OS=Gossypium raimondii OX=29730 GN=B456_011G045800 PE=4 ... [more]
tr|A0A061GKU0|A0A061GKU0_THECC5.2e-4074.55Small nuclear ribonucleoprotein family protein isoform 1 OS=Theobroma cacao OX=3... [more]
The following terms have been associated with this gene:
Vocabulary: Cellular Component
TermDefinition
GO:0031417NatC complex
Vocabulary: INTERPRO
TermDefinition
IPR010920LSM_dom_sf
IPR034110LSMD1
IPR001163LSM_dom_euk/arc
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
cellular_component GO:0031417 NatC complex
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg25443-RACarg25443-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001163LSM domain, eukaryotic/archaea-typePFAMPF01423LSMcoord: 30..89
e-value: 2.7E-7
score: 30.1
NoneNo IPR availableGENE3DG3DSA:2.30.30.100coord: 22..106
e-value: 1.8E-17
score: 64.9
NoneNo IPR availablePANTHERPTHR10701:SF9SMALL NUCLEAR RIBONUCLEOPROTEIN FAMILY PROTEINcoord: 19..111
NoneNo IPR availablePANTHERPTHR10701SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND Ncoord: 19..111
IPR034110LSM domain containing 1CDDcd06168LSMD1coord: 28..100
e-value: 1.20834E-24
score: 89.1533
IPR010920LSM domain superfamilySUPERFAMILYSSF50182Sm-like ribonucleoproteinscoord: 26..101

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Carg25443Melon (DHL92) v3.6.1carmedB0217