Cla97C03G057330 (gene) Watermelon (97103) v2

Overview
NameCla97C03G057330
Typegene
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionprotein LSD1-like isoform X1
LocationCla97Chr03 : 6018647 .. 6020822 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTGTCAGTGCTTCCGAGGGTTATTTCAGATTTTGTGTTTGCGAATCTTCGTCTTGGTTTTGAGATTCGAAGCATTTAATTATTTCCCATCTCTGGCCCTTTATACATCTGATTGAACTTCTGTTGATTGAATTCAAAACTTAAGCTGACATTTTTCTTTTGTGAGTGAATCAATTTGGTGGTTGCTTCCCACTTCTTATAACGGTGAATATGTTAACCTAAGTTAGCAGGAAAACTCTTTCTAAAATTAATCCAATTCACATCTGTGCAGTGTGTGTTATTAATCCGCATACACAATTGTATTCACACGTAGTTTCAGTTCATGGAATCGATTTTCATCCAACAAAAGCGCATAGAAGTTGGGGCATTCTTGCTAGCATGTTTAATTGCAAGTCCCAAATATTGTAATTGTTCTCACTGGAAACGTTTTGATCTGCAGCCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGGTTCCTTCTCTTTTCCTTCCTTCTTTTTAGGTTTTTCTATTATTTTCTTCCTCAAAAGTTGTCTTGTTCATATGCTGTTGGGTTTTTGCTAATTTTTAAGAGCCCCAATTCCCATGTATGTTGGTTTCCAAATGCCATTAGCACTTCCAAACTCTATGCTCTTCAATTCTGTTTTCTTTCTACTGCGTCCTCTTTCATTAGAGGGTCAAGTGTTCGGTTTTAACTCTGAATATCTTTTTCTTGTGCTAGTTCTGGGTGGTGCCTGTGTACCCCATTATGTGATTGTGCCTCCAAACATTAATGCTCTACATAAAACCAAATATTGTAGGATTTATGATACTTTTCAGATGGGTCATAGATGAGTTTAGGTGGTCTTACAGACATTGAAATCTGAATCATTTTCCCCCTTTCCTGCATTCAAAGTATCCACATCTTAGCCACCAAGTACAATTGTTGAGTTCGATCAACTCATCCTTAGGACGAGCCAACACTAGACCAGTTTATAAATTAAATAACTGTATACAGCCTGAAATCCAAATGATCATTACTTTTTCCATTTCCATTTCTTTTCAATACATGCTTGTATCTGGATGTTAAAAGCAAATTTTGGCTTTCCAGAAGGGTTTCTACTATGTGCGTGTAATTGTCCAAGTATTCTGTCCTTCCCGTTGTATTAATAGGTACTCTATTGTAGATTGATTGAATTTTGAAGATTTTAGCTGATGGGATTAGATTAGAGTCTAATTCTCCTTGAAAACTCTCATTTCCTAGAATTTGGGTTCAGTGGATGTAATCAATCATTTCTAGAATCTGCTGAAAAAATGAAATTCATGTTTAGAAGAAAAATACTTCAGCATAACATTTTTTGGCAGTTCAAATCTATATTGTTCTGAAAAGTTCACGTCTGTCCCAAGGCAGTTCAAGTTTATCTATACAATTTTTACTTAATTAGTCTTTATAACGACTTGCTGTCAATGTCTTATGATTCAGCTTTTCCTTTTCTTTTATTAACACCTCTTCATTCTCCTTTCAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTATGTCACTCCACATTCTGGCAAAGTTCTTGCTTGGAATATGCTTAAATACATATCGTACAGTCTAAATCTTTATAGTTGTCTCCTTCATTCATGGTTAAATTACAAATTTCAGTCTATATGGTTTGAAGAAAGTTAGAATTTAGTTTTTATGGTTTGATAAAACCTCATAAATAGTTCTTGTGGATTTTAATTATGCTTTTGTTTGCGAGTTCACATTTATGGAAACGAGGGTGACGGTTACGGTAATTTCAACTGTTTCTTTGCTTTGATGCTTGATTTTTTTTATTCATCGGCTTTAAGTGGCTGTGCAGGTGCATAACAGGCGTCCACCGTGGTCTGTCCAGCAGGGACAAGGAGCCCCTCCTACCAACTTTGTCCAGTAG

mRNA sequence

ATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTCCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTGCATAACAGGCGTCCACCGTGGTCTGTCCAGCAGGGACAAGGAGCCCCTCCTACCAACTTTGTCCAGTAG

Coding sequence (CDS)

ATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTCCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTGCATAACAGGCGTCCACCGTGGTCTGTCCAGCAGGGACAAGGAGCCCCTCCTACCAACTTTGTCCAGTAG

Protein sequence

MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQGAPPTNFVQ
Homology
[Close]
BLAST of Cla97C03G057330 vs. NCBI nr
Match: XP_004146601.1 (PREDICTED: protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_1G073830 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 6.7e-43
Identity = 125/131 (95.42%), Postives = 126/131 (96.18%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120
           SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVHQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Cla97C03G057330 vs. NCBI nr
Match: XP_023001758.1 (protein LOL2 [Cucurbita maxima])

HSP 1 Score: 176.4 bits (446), Expect = 6.3e-41
Identity = 121/131 (92.37%), Postives = 125/131 (95.42%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLP-LPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           M++HEI+KDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120
           SCCSTVN+VLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTN VQ
Sbjct: 121 GQAAPPTNSVQ 131

[Close]
BLAST of Cla97C03G057330 vs. NCBI nr
Match: XP_008442544.1 (PREDICTED: protein LOL2 isoform X4 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPP-PPLSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120
           S CSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Cla97C03G057330 vs. NCBI nr
Match: XP_011653178.1 (PREDICTED: protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-39
Identity = 120/132 (90.91%), Postives = 122/132 (92.42%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPP--LSSDMAQMVCGTCRRLLKYLKGARCVQ 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPPPP   S+DMAQMVCGTCRRLLKYLKGAR VQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ 120
           CSCCSTVNFVL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSV 
Sbjct: 61  CSCCSTVNFVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVH 120

Query: 121 QGQGAPPTNFVQ 131
           QGQ APPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]
BLAST of Cla97C03G057330 vs. NCBI nr
Match: XP_008442535.1 (PREDICTED: protein LOL2 isoform X3 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 121/132 (91.67%), Postives = 122/132 (92.42%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPLSS--DMAQMVCGTCRRLLKYLKGARCVQ 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P  S  DMAQMVCGTCRRLLKYLKGAR VQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ 120
           CS CSTVNFVLEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ 120

Query: 121 QGQGAPPTNFVQ 131
           QGQ APPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]
BLAST of Cla97C03G057330 vs. TrEMBL
Match: tr|A0A0A0LXE3|A0A0A0LXE3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.4e-43
Identity = 125/131 (95.42%), Postives = 126/131 (96.18%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120
           SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVHQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Cla97C03G057330 vs. TrEMBL
Match: tr|A0A1S3B6Q2|A0A1S3B6Q2_CUCME (protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.1e-41
Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPP-PPLSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120
           S CSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Cla97C03G057330 vs. TrEMBL
Match: tr|A0A1S3B6K2|A0A1S3B6K2_CUCME (protein LOL2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.6e-39
Identity = 121/132 (91.67%), Postives = 122/132 (92.42%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPLSS--DMAQMVCGTCRRLLKYLKGARCVQ 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P  S  DMAQMVCGTCRRLLKYLKGAR VQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ 120
           CS CSTVNFVLEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ 120

Query: 121 QGQGAPPTNFVQ 131
           QGQ APPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]
BLAST of Cla97C03G057330 vs. TrEMBL
Match: tr|A0A1S3B6N7|A0A1S3B6N7_CUCME (protein LOL2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.0e-28
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1  MDVHEIDKDEDDGPPPGWEPITPPLPLPP-PPLSSDMAQMVCGTCRRLLKYLKGARCVQC 60
          MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61 SCCSTVNFVLEAH 73
          S CSTVNFVLEAH
Sbjct: 61 SWCSTVNFVLEAH 73

[Close]
BLAST of Cla97C03G057330 vs. TrEMBL
Match: tr|A0A1S3B5V8|A0A1S3B5V8_CUCME (protein LOL2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-26
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 0 

Query: 1  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPLSS--DMAQMVCGTCRRLLKYLKGARCVQ 60
          MDVHEI+KDEDDGPPPGWEPITP LPLPP P  S  DMAQMVCGTCRRLLKYLKGAR VQ
Sbjct: 1  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61 CSCCSTVNFVLEA 72
          CS CSTVNFVLEA
Sbjct: 61 CSWCSTVNFVLEA 73

[Close]
BLAST of Cla97C03G057330 vs. Swiss-Prot
Match: sp|Q704V3|LOL5_ORYSJ (Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.2e-08
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 16  PGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEA 72
           P  +   P +P PP P L+ ++ QMVCG+CR LL Y +GA  V C+CC T+N+VLEA
Sbjct: 47  PCLQDSVPLVPPPPSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEA 103

[Close]
BLAST of Cla97C03G057330 vs. Swiss-Prot
Match: sp|O65426|LOL2_ARATH (Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-07
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 26  PLPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHXXXXXXXXXXXXX 85
           P P      + AQMVCG+CRRLL YL+G++ V+CS C TVN VL   XXXXXXXXXXXXX
Sbjct: 48  PNPTTVEIPEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLXXXXXXXXXXXXXXXX 107

Query: 86  XXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQG 121
           XXXXXXXXXXXXXXXXXXX      +RPPWS QQG
Sbjct: 108 XXXXXXXXXXXXXXXXXXXXXXXXXKRPPWSEQQG 142

[Close]
BLAST of Cla97C03G057330 vs. TAIR10
Match: AT4G21610.1 (lsd one like 2)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-08
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 26  PLPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHXXXXXXXXXXXXX 85
           P P      + AQMVCG+CRRLL YL+G++ V+CS C TVN VL   XXXXXXXXXXXXX
Sbjct: 48  PNPTTVEIPEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLXXXXXXXXXXXXXXXX 107

Query: 86  XXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQG 121
           XXXXXXXXXXXXXXXXXXX      +RPPWS QQG
Sbjct: 108 XXXXXXXXXXXXXXXXXXXXXXXXXKRPPWSEQQG 142

The following BLAST results are available for this feature:
BLAST of Cla97C03G057330 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146601.16.7e-4395.42PREDICTED: protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical pr... [more]
XP_023001758.16.3e-4192.37protein LOL2 [Cucurbita maxima][more]
XP_008442544.11.1e-4093.89PREDICTED: protein LOL2 isoform X4 [Cucumis melo][more]
XP_011653178.12.0e-3990.91PREDICTED: protein LOL2 isoform X1 [Cucumis sativus][more]
XP_008442535.11.0e-3891.67PREDICTED: protein LOL2 isoform X3 [Cucumis melo][more]
BLAST of Cla97C03G057330 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXE3|A0A0A0LXE3_CUCSA4.4e-4395.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1[more]
tr|A0A1S3B6Q2|A0A1S3B6Q2_CUCME7.1e-4193.89protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1[more]
tr|A0A1S3B6K2|A0A1S3B6K2_CUCME6.6e-3991.67protein LOL2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1[more]
tr|A0A1S3B6N7|A0A1S3B6N7_CUCME4.0e-2890.41protein LOL2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1[more]
tr|A0A1S3B5V8|A0A1S3B5V8_CUCME2.9e-2687.67protein LOL2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1[more]
BLAST of Cla97C03G057330 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q704V3|LOL5_ORYSJ6.2e-0850.88Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1[more]
sp|O65426|LOL2_ARATH4.0e-0768.42Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1[more]
BLAST of Cla97C03G057330 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21610.12.2e-0868.42lsd one like 2[more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005735Znf_LSD1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0010618 aerenchyma formation
biological_process GO:0009626 plant-type hypersensitive response
biological_process GO:0010602 regulation of 1-aminocyclopropane-1-carboxylate metabolic process
biological_process GO:0010104 regulation of ethylene-activated signaling pathway
biological_process GO:0010310 regulation of hydrogen peroxide metabolic process
biological_process GO:0043067 regulation of programmed cell death
biological_process GO:0001666 response to hypoxia
biological_process GO:0002240 response to molecule of oomycetes origin
biological_process GO:0009751 response to salicylic acid
biological_process GO:0000303 response to superoxide
biological_process GO:0009617 response to bacterium
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla97C03G057330.1Cla97C03G057330.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005735Zinc finger, LSD1-typePFAMPF06943zf-LSD1coord: 79..103
e-value: 5.4E-11
score: 42.0
coord: 41..65
e-value: 1.3E-6
score: 28.0
IPR005735Zinc finger, LSD1-typeTIGRFAMTIGR01053TIGR01053coord: 38..68
e-value: 2.3E-12
score: 44.3
coord: 76..105
e-value: 3.3E-12
score: 43.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..31
NoneNo IPR availablePANTHERPTHR31747:SF4PROTEIN LOL2coord: 4..127
NoneNo IPR availablePANTHERPTHR31747FAMILY NOT NAMEDcoord: 4..127

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla97C03G057330Cla019503Watermelon (97103) v1wmwmbB124
Cla97C03G057330Csa1G073830Cucumber (Chinese Long) v2cuwmbB032
Cla97C03G057330MELO3C002600Melon (DHL92) v3.5.1mewmbB156
Cla97C03G057330ClCG03G006020Watermelon (Charleston Gray)wcgwmbB186
Cla97C03G057330CSPI01G12090Wild cucumber (PI 183967)cpiwmbB032
Cla97C03G057330Cucsa.126650Cucumber (Gy14) v1cgywmbB200
Cla97C03G057330CmaCh13G006470Cucurbita maxima (Rimu)cmawmbB228
Cla97C03G057330CmoCh13G006650Cucurbita moschata (Rifu)cmowmbB212
Cla97C03G057330CmoCh07G000380Cucurbita moschata (Rifu)cmowmbB857
Cla97C03G057330Lsi02G007490Bottle gourd (USVL1VR-Ls)lsiwmbB176
Cla97C03G057330CsGy1G012110Cucumber (Gy14) v2cgybwmbB032
Cla97C03G057330MELO3C002600.2Melon (DHL92) v3.6.1medwmbB145
Cla97C03G057330Carg21497Silver-seed gourdcarwmbB0999
Cla97C03G057330CsaV3_1G012280Cucumber (Chinese Long) v3cucwmbB030
Cla97C03G057330Bhi08G001280Wax gourdwgowmbB477
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Cla97C03G057330Watermelon (97103) v2wmbwmbB068
Cla97C03G057330Silver-seed gourdcarwmbB0157
Cla97C03G057330Cucurbita maxima (Rimu)cmawmbB025
Cla97C03G057330Cucurbita maxima (Rimu)cmawmbB413
Cla97C03G057330Cucurbita moschata (Rifu)cmowmbB013
Cla97C03G057330Cucurbita moschata (Rifu)cmowmbB394
Cla97C03G057330Bottle gourd (USVL1VR-Ls)lsiwmbB278
Cla97C03G057330Watermelon (Charleston Gray)wcgwmbB071
Cla97C03G057330Watermelon (97103) v1wmwmbB370