CmoCh07G000380 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh07G000380
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Zinc finger protein LSD1
Location	Cmo_Chr07 : 264138 .. 270628 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGACAGCTTTCCTTCTTGGGGCTGCGACGTGATCGTTTCTGTAGATAATCAGTGTTCGCGCGAGGAGGATCGGGACAAGGTGATTTTTTCTTGATTTGGATTTTTGCTGTTTTTTTTTTTTTCCGGAGACTTGGGCTTGTAGACTTTTATGCTGCCCTAAGGAATTTTCATTGGATTGACTGGTACTTTTTAGTTTTGAGATGTCCTTTGCCCGGGCATTCATTCTTTTATGGTGCATCTATCCCAATTACACGCTGTTCTTTAATTTTGCAATCTTATGTACATACATACAACAATGAAGTAGTTTGCGTAGATTTTTCCCACAATAAGAGATTTTAGTATTGATCGAATAGGCTGTACAAAGAGGGCTGAGGACGAGAAGAGCTTCTTAACTATTGTTGAAAAAGGAAATGAGTAACGAAAATTTTCCGGTAACAAATAAGCAAAGAGAACCTTAATTGTCCCCGCAACTCTTTTAGATCCGTTTTTGTTCTCAAAATTTATTTGTGTGGTTGATCTACTTTTATCCCTCTGTTTCCTGGTTAAAATTTTCAATAATTAGGTCTACTTTAGTTTTGAAGCTTAATTTCTGTGTACCACATCGATCAATTTATGGCAGAAAGAGGGAGTATTTTTCTGATGGAATTTATATCCATGCTTGATCAATGGACTTATATAGATTATTGTTTAATATTGATTCTAGTTAAGGAAAACTTCTGCTTTATATGAAATTCATGTACATGGAGGGATGTTAGTTTATTTATTTTTATTTACTTCATTCTTGCATTTAGCATATGCTGTTCTTGGTTAACTAGTCCACTCTTAGTAAGCTCTTGATTTTCTCCCTTAATGTAGCAGCTATGCAGAGCCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGGGCTACTAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCCTGGTATACATTTTTTTTCTTATCTATTATTTCCCCCTTTTTTGTAGTTAAAAAGCGTCAATGAATTATAAAAATAAATGCAATGTGCTAAGTAAGATGATTATAATCTACTTGACTGACTATTTAATTTGGGCTGGAGGAAGAATGGTCAAGTGAGTGACTTCGTTTACTAATTCAAACATGGCATAGAATTCAATTGTGACTGTTTTCAACTCCTAATTCAATTATGACATGGATATGAAATTATTCAAAGTAATAGACATTTTGAGTGACATTCAAACAAAAGAAAATTATCACAAAATCTGAAAGGGTCTATTGGGACTCGAGACAGAAGGCAAAAAGAAAAAAGACTGTTTTTAGAGATTGAAGTCTACTTTTGTAATTAGGGTTTGGACTCGTTTTATGTGACTGATTTTTTATATGCCTTTATATGTTATTTCATTGTTTTATAACATATGTTCGTTTTCTCACCAAAAAAAAAAAACAGTTTCTCTCTCCTCTCTCTGCTAAATCTTGAACTTTTCTAGTAGTTTCATTTCAAGTATGTTGGCATTTGAGGGTTTTGGACTAGTTACCATCATATTCTATATGTTTTGCTTTCAGATATAGAGATCTTGTATCTGAAATAGGTTTTTCTTAACTGGACACAAAATTTAACCCAATAAAGGATGTACAAGTTCTCAACAATTTGGTCTTTTATTTCTTCTCATGGGTAAATGATTATTTCTTCATTTCTGATGAGCAAATATCTTCTGTGCATGATTATTGTGTGCATTGCACTTTCTCCCGATCTATCTATGTTTGAGTAATGCCCTAAATTCTCACTAGAGCTAATAGATAATCATTAGAAGAACCATACTGTTAAGACTATCAATAGATTTAAAGTGTAACATTAGACTGTCGATAGACTGAGAGGTGTGGAATTTGGCGTGTATATAGTTCTTGGACCAAGGTAACTAGCCCTTTTAGAATTTTTTTTGGTGGATGGTGTTGTTTTGGATAGCCTCTCTTCTGTCTTCCATTTTTTAAGATCCAGTTGTAATATTTGCTATGTTTAATGGGGTAAATTAGTTAAAGACAAGAATAAGGGGTGCATTTGTGATAGTTTTTTAAACAAAAAGTAAAATAAGCGATGAAGTAGACCATCTGTAAAATAGGATTACTGTGATCTGCAAAGGAAAAGGGTGTCATTATGGTATTTCCTTCTTTGTGCATTTCATGTAGAAGTGAGATCAGAATTTAGACAATCTCTTTTGCAATGGTGATTCTGATAGATGATTGTGATATAAGAATATTTTCATTTCATAAGGCACCAAGAAAAACAGGGCTGTGATATAGGCTGCTTTGCAAGTTTGAAGTCTTATGGATTTGGGCACAAGTAAACTTCTTCATAATGGAATATGTTCATGTGAAGAGGTTCCAAGTGGAAGATTAGTGTGTTTGTGGCCATTTGTGGAGTATCTCTTTTAATATTTGTAGGCCAAATCTATCAAATGCTCCCTTTGTAGGTAATTCACAATTCAGTCCTTATATCTTTTAAAATTCTTGATTTTACCCTTAATTTATTAAAAAATCTGATTTAAGTCTTTCCATGACAAAATCTAATAAAATTTATCAGAATTTTTTACCAGGTCTGATTTGAATTTGGCATCTATATTTGTATGCTTAGTTGATAGAGATGCAGAATATATGATAGTTGGCATAATAAATCTCATGAATTTAGGTAGTAGGCCCTTTCTTTTTGCACTCCGAATTAGTTTTAGGGACCCATTATCCTTTAGGCTGTCTCCTCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTTTTTGAATATTCTGTCCTACGTTTCCCAATAAAAAAAGGTAGTGAGCAGAACAAATGAGTTGAACCAGAATTGCTTATTCACGACTCTTGTTTTATTAGTTTCTAGCTTATTTTTTTTATTTCTTAAAAATTGACCATTAAGTTTTGATACAAGAGGTATGTAAACGTGTCTCCATTCCTTTTAGCATATGGACCCCAGTAACTGCTTTTAGTTGGTCATAGATATTTGTGGTGTGGTAACTCCTTCAAAGTTTATACCAAAAACTTGGGCCTTGCATTTGCAGGAACAGATATGGCTCAACTTATATGTAGAGGTTGCAGGACATTGCTTATGTATGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGCCATACAGTGAACCTTGCACCTGGTACGGAGTTTTTAAAAGTATTTGAATGTGATAGAGCCCCCATATGTATTTGAGCTTTGATTTATTTAGTGAACTAGGGATAGCAGTAAGACTTGGGCATTGAGATGATTGAGTGATTGATTTTCTCCTGTAATTCTCTTGGTTCTTTTTCATTTCCTCATCTTTGCTCTCTTCCTTTACTTCGTACGCTCTTGTATTCTTCAAGGGAAAAAGTATATAATATCTTTTAAAGTAGGTTCTGCTTTGCTTGACAACAAAAAAATGGTTATGTTGTTGCTAGCCAATTTTCTCAAGCACTTCTGTTGTATTGCACTTTTTTTTCCAATTATTTCGATAAGGATTTGCTCTAAATCTTCTCATTATTACTATTGATGCAACCTAGAGGAATCGTTTCTTAGTTGTTTTTCTGGGATGGTCTGCTTGGGAAATGAAACCTTTCCCAATTGGGATGTGGGATCTTATTTATGCCAATTCTGGTCTTGTTTATGCTGGTTCCTGCCTTATGCTATTTATTATTAGATGCTCAAAGTTTTCTGATGTTATAGCAGTTAGCTAGGTTACTGAGTGCTAATGTTTGGGTGTTGTGACTATTTAAAAAAAAAGCTACGAACCAGGTGGCACATGTTAACTGTGGAAACTGTCGAACAACACTCATCTTTCCCTATGGAGCTCCATCTGTCAAGTGTGCGATTTGTCACTATGTTACTAATGTTGGTGTAAGTATAATTCATTTACTTCGTGTGGCTGTAGAAATTTCTAGATGTTCTTAGTTAGGTGAGTCAACTGAATGTCATGGGTTGGAAGTACTCTCTTGATATGAAGCCTTACTTTTCTTCCGTATGCCTCCATTGACCCCATTAACCCAAAGATTAAGCTGATAGGTTATAGTAAATTTAACACTCTCCTTAACTTGTGGGCTTGATAATTTGTAGAAGACCCAGCAAGTGGAAAACAATATTAATTGAGGAGGAAATGACATTATAGGGAATCAAACACAGGGCCTCCTACTCTTATTCCATGTCAATACCATAACATTTATAAATCACCAATTATCCCAAAAGGTTTAATTAATGGGTTATGAGAAATTTAATCTCATATCAATACCATAACATTTATAAATACCTAACTAGCAAGTTTTGACTTTGAAAAGCAACTTAGGCTAGTTTCGATGTGATTTGAGTAAAACTTGTCTAGCTTGAGAGGATACAACTAGATTTTGAGGTCCAAACTAAGGTGGTACAGTTTGTAGCAGTCTTATACTTGTTAAATTCCTAAATAATCATTTTTTTCTGCAATTGGGTTGATTGGAAATATCAAGGAAGAACTAAAATGTAGAAAACTTTAGAAACACGTAAGCATTCAAGACATTTAGTTTATGAACTTTTCATGAACCGGAAGTGGTACAATTACGATCTGTTAAATGCTTATGAATACATTTTATCGCCTGATATTTATTTCTGTTCTTCATGCCTTTTCCATTTATACCTCTTTGCAGATGTCCAACGTGAGGGTTCCTATTCCAGTGCACAGACGAAATGGAACAATTAGCTCTGGGATGCCCCCTGCATCATCAGTATGCTCTCAAGCTTTTCATTTCCTACGTCCTTCCTTTCAGGCCTCTGCGTGTGGGGGGCTATTATTTTTATTCTACGGCATAATTGATTTGGTATAACTATTTTCATTTGTTGCAGTCTCAGAGCCAAACTGTTGTAGTTGAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTAAGTACTCATGCTGTTCATTCGGTTGTTTTTCCTTTACCCTCCGGAATCGTCTTTCTCTGGTTCATTATGAACTACAGACTGTGTTGACTCTTAATATTCTGAACGATAGGTGAGCAATCTTGTTGTCGGTGTCACGACGGATAAAAGGTAACGTGGTGGAGAAGATGGTTGATGGCATTTACTATTATCGGTTTAAAAAGGATGGGAGGAAGCGATCTATATATATATATCTTTAGTACATTACTATACTGCTTGGGATATGAATATGGTTTTGGAAATTTCTGTATAGTTTGTCTCTGGATTTTCCCTCGAAGTCACCATTCATTATTGAGTCAACGTCAATTTGAGGTTCAGATAAGTTTTTACCCTGGGAATGTGATGTATATTGTGGACCAGAAGAATTGGATATATAGTGTGATTTTCTGTACCGAATCATTGAGCTGTCTCGCAAGTAAAAATATTATACATCCATTTTATCCCCCTTAGGTAAATGAGTATAAACCCTGTCTTGTAATTCTGTTTCCTTGATTGGTGATATGATATGCATTTCGAATTTCATTGGTTTTGTTCATATCTTTTAAGCATTCATCTCTCTTCCTATCTCTACTCTACTTTCTGCAGATTGTTTGTATCAGTCTACTTGCAACTACTAATTGTAAGGTTCCATTCTAGCTTTTCTTTCCTCTATTTCTGTTGTGATTTCCAATTCTGATTTTAATGCTAATATAATGATGTACCATATCCTTGATGATTTTGTACCGTTAAATTATCATATTTTTAT

mRNA sequence

ATGACTGACAGCTTTCCTTCTTGGGGCTGCGACGTGATCGTTTCTGTAGATAATCAGTGTTCGCGCGAGGAGGATCGGGACAAGTCCACTCTTAGTAAGCTCTTGATTTTCTCCCTTAATGTAGCAGCTATGCAGAGCCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGGGCTACTAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCCTGGAACAGATATGGCTCAACTTATATGTAGAGGTTGCAGGACATTGCTTATGTATGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGCCATACAGTGAACCTTGCACCTGCTACGAACCAGGTGGCACATGTTAACTGTGGAAACTGTCGAACAACACTCATCTTTCCCTATGGAGCTCCATCTGTCAAGTGTGCGATTTGTCACTATGTTACTAATGTTGGTATGTCCAACGTGAGGGTTCCTATTCCAGTGCACAGACGAAATGGAACAATTAGCTCTGGGATGCCCCCTGCATCATCATCTCAGAGCCAAACTGTTGTAGTTGAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATCTTGTTGTCGGTGTCACGACGGATAAAAGGTAACGTGGTGGAGAAGATGGTTGATGGCATTTACTATTATCGGTTTAAAAAGGATGGGAGGAAGCGATCTATATATATATATCTTTAGTACATTACTATACTGCTTGGGATATGAATATGGTTTTGGAAATTTCTGTATAGTTTGTCTCTGGATTTTCCCTCGAAGTCACCATTCATTATTGAGTCAACGTCAATTTGAGGTTCAGATAAGTTTTTACCCTGGGAATGTGATGTATATTGTGGACCAGAAGAATTGGATATATAGTGTGATTTTCTGTACCGAATCATTGAGCTGTCTCGCAAGTAAAAATATTATACATCCATTTTATCCCCCTTAGGTAAATGAGTATAAACCCTGTCTTGTAATTCTGTTTCCTTGATTGGTGATATGATATGCATTTCGAATTTCATTGGTTTTGTTCATATCTTTTAAGCATTCATCTCTCTTCCTATCTCTACTCTACTTTCTGCAGATTGTTTGTATCAGTCTACTTGCAACTACTAATTGTAAGGTTCCATTCTAGCTTTTCTTTCCTCTATTTCTGTTGTGATTTCCAATTCTGATTTTAATGCTAATATAATGATGTACCATATCCTTGATGATTTTGTACCGTTAAATTATCATATTTTTAT

Coding sequence (CDS)

ATGACTGACAGCTTTCCTTCTTGGGGCTGCGACGTGATCGTTTCTGTAGATAATCAGTGTTCGCGCGAGGAGGATCGGGACAAGTCCACTCTTAGTAAGCTCTTGATTTTCTCCCTTAATGTAGCAGCTATGCAGAGCCAACTTGTATGCAGTGGGTGTAGGAGCATTCTTCTTTATCCTGGAGGGGCTACTAATGTATGCTGTGCATTATGCAATACAGTCACCTCAGTTCCTCCTCCTGGAACAGATATGGCTCAACTTATATGTAGAGGTTGCAGGACATTGCTTATGTATGCACGTGGGGCAACAAGTGTTAGATGCTCATGCTGCCATACAGTGAACCTTGCACCTGCTACGAACCAGGTGGCACATGTTAACTGTGGAAACTGTCGAACAACACTCATCTTTCCCTATGGAGCTCCATCTGTCAAGTGTGCGATTTGTCACTATGTTACTAATGTTGGTATGTCCAACGTGAGGGTTCCTATTCCAGTGCACAGACGAAATGGAACAATTAGCTCTGGGATGCCCCCTGCATCATCATCTCAGAGCCAAACTGTTGTAGTTGAGAACCCTATGTCTGTTGATGAAAGTGGCAAATTGGTGAGCAATCTTGTTGTCGGTGTCACGACGGATAAAAGGTAA

Homology

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BLAST of CmoCh07G000380 vs. Swiss-Prot
Match: LSD1_ARATH (Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1)

HSP 1 Score: 241.1 bits (614), Expect = 1.1e-62
Identity = 126/192 (65.62%), Postives = 149/192 (77.60%), Query Frame = 1


Query: 39  LNVAAMQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICRGCRTLL 98
           + VA MQ QLVC GCR++L+YP GA+NV CALCNT+  VPPP    DMA +IC GCRT+L
Sbjct: 1   MKVADMQDQLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTML 60

Query: 99  MYARGATSVRCSCCHTVNLAPA-TNQVAH--------VNCGNCRTTLIFPYGAPSVKCAI 158
           MY RGA+SVRCSCC T NL PA +NQVAH        +NCG+CRTTL++PYGA SVKCA+
Sbjct: 61  MYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAV 120

Query: 159 CHYVTNVGMSNVRVPIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLV 215
           C +VTNV MSN RVP+P +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLV
Sbjct: 121 CQFVTNVNMSNGRVPLPTNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLV 180

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BLAST of CmoCh07G000380 vs. Swiss-Prot
Match: LOL3_ORYSJ (Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 3.4e-56
Identity = 112/186 (60.22%), Postives = 132/186 (70.97%), Query Frame = 1


Query: 44  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGT--DMAQLICRGCRTLLMYARG 103
           MQSQ+VC GCRS+L YP GA +VCCALC  +T+VPPP    +MA LIC GCRTLLMY R 
Sbjct: 1   MQSQIVCHGCRSVLRYPSGAPSVCCALCQAITTVPPPAPVMEMAHLICGGCRTLLMYTRN 60

Query: 104 ATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVR- 163
           A +VRCSCC TVNL    N +AHV+CG CRTTL++PYGAPSVKCAICHY+TN GM+ V  
Sbjct: 61  ADTVRCSCCSTVNLVRPVNNIAHVSCGQCRTTLMYPYGAPSVKCAICHYITNTGMNTVAP 120

Query: 164 VPIPVHRRNGTISSGMP-------------PASSSQSQTVVVENPMSVDESGKLVSNLVV 214
            P P+   +G+  +  P             P S  Q+ TVVVENPM+VDE GKLVSN+VV
Sbjct: 121 TPSPMPTSSGSSYNAPPSGSSYNAPPPTSAPTSRPQNVTVVVENPMTVDEKGKLVSNVVV 180

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BLAST of CmoCh07G000380 vs. Swiss-Prot
Match: LOL2_ORYSJ (Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1)

HSP 1 Score: 214.2 bits (544), Expect = 1.4e-54
Identity = 106/169 (62.72%), Postives = 131/169 (77.51%), Query Frame = 1


Query: 44  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPP-PGTDMAQLICRGCRTLLMYARGA 103
           MQSQ+VC GCR+ILLYP GA +VCCA+C+ V+S  P PG D+A LIC GCRTLLMY R A
Sbjct: 1   MQSQIVCHGCRNILLYPRGAPSVCCAVCHAVSSTAPSPGMDIAHLICGGCRTLLMYTRNA 60

Query: 104 TSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVP 163
           TSVRCSCC TVNL    + +AH+NCG C+T L++PYGAPSVKCAIC+++TN GM+ +R  
Sbjct: 61  TSVRCSCCDTVNLVRPVSSIAHLNCGQCQTVLMYPYGAPSVKCAICNFITNTGMNTMR-H 120

Query: 164 IPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNLVVGVTT 212
           +P +  + T  S   P + SQ+ TVVVENPM+VD  GKLVSN+VVGVTT
Sbjct: 121 LPPNGTSYTAPSTSAPTTQSQNVTVVVENPMTVDAKGKLVSNVVVGVTT 168

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BLAST of CmoCh07G000380 vs. Swiss-Prot
Match: LSD1_ORYSJ (Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.4e-46
Identity = 84/113 (74.34%), Postives = 100/113 (88.50%), Query Frame = 1


Query: 45  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGATS 104
           QSQLVCSGCR++L+YP GAT+VCCA+C+TVT+VP PGT+MAQL+C GC TLLMY RGATS
Sbjct: 63  QSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCGGCHTLLMYIRGATS 122

Query: 105 VRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMS 158
           V+CSCCHTVNLA   NQVAHVNCGNCR  L++ YGA SVKCA+C++VT+VG S
Sbjct: 123 VQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARSVKCAVCNFVTSVGAS 175

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BLAST of CmoCh07G000380 vs. Swiss-Prot
Match: LOL1_ARATH (Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 4.2e-46
Identity = 84/113 (74.34%), Postives = 99/113 (87.61%), Query Frame = 1


Query: 45  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGATS 104
           QSQLVCSGCR++L+YP GAT+VCCA+CN VT+VPPPGT+MAQL+C GC TLLMY RGATS
Sbjct: 32  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 91

Query: 105 VRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMS 158
           V+CSCCHTVNLA   NQVAHVNCGNC   L++ YGA SVKCA+C++VT+VG S
Sbjct: 92  VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGS 144

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BLAST of CmoCh07G000380 vs. TrEMBL
Match: A0A0A0KJ18_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526320 PE=4 SV=1)

HSP 1 Score: 342.0 bits (876), Expect = 5.1e-91
Identity = 166/171 (97.08%), Postives = 170/171 (99.42%), Query Frame = 1


Query: 44  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGAT 103
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLIC GCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 104 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPI 163
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTL+FPYGAPSVKCAICHYVTNVG+SNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 164 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 215
           PVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSN+VVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

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BLAST of CmoCh07G000380 vs. TrEMBL
Match: M5WHS3_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012421mg PE=4 SV=1)

HSP 1 Score: 299.3 bits (765), Expect = 3.8e-78
Identity = 145/171 (84.80%), Postives = 159/171 (92.98%), Query Frame = 1


Query: 44  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGAT 103
           MQSQLVCSGCRSILLYP GATNVCCALCN +T VPPPGT+MAQLIC GCRTLLM+ RGAT
Sbjct: 1   MQSQLVCSGCRSILLYPRGATNVCCALCNIITPVPPPGTEMAQLICGGCRTLLMHTRGAT 60

Query: 104 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPI 163
           SVRCSCCHTVNLAPA++QVAHVNCGNCRTTL++PYGAPSVKCA+CHYVTNVGM+N+RVPI
Sbjct: 61  SVRCSCCHTVNLAPASSQVAHVNCGNCRTTLMYPYGAPSVKCAVCHYVTNVGMTNMRVPI 120

Query: 164 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 215
           PVHR NGT +SG  P S+S SQTVVVENPMSVDESGKLVSN+VVGVTT K+
Sbjct: 121 PVHRPNGTANSGTAP-STSASQTVVVENPMSVDESGKLVSNVVVGVTTGKK 170

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BLAST of CmoCh07G000380 vs. TrEMBL
Match: G7L9L5_MEDTR (LSD1-type zinc finger protein OS=Medicago truncatula GN=MTR_8g089310 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-75
Identity = 140/178 (78.65%), Postives = 157/178 (88.20%), Query Frame = 1


Query: 42  AAMQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARG 101
           AAMQSQLVC+GCR+ LLYP GATNVCCALCNT+T+VPPPG DM+QL C GCRTLLMY RG
Sbjct: 46  AAMQSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRG 105

Query: 102 ATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRV 161
           ATSVRCSCCHTVNLAP +NQVAHV CGNCRTTL++PYGAPSVKCA+CHY+TN+ MSN R+
Sbjct: 106 ATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRL 165

Query: 162 PIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 215
           PIP HR +GT  SGM P++S     SQSQTVVVENPMSVD SGKLVSN+VVGVTTDK+
Sbjct: 166 PIPGHRPHGTTDSGMLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 223

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BLAST of CmoCh07G000380 vs. TrEMBL
Match: G7L9L4_MEDTR (LSD1-type zinc finger protein OS=Medicago truncatula GN=MTR_8g089310 PE=4 SV=2)

HSP 1 Score: 290.4 bits (742), Expect = 1.8e-75
Identity = 140/178 (78.65%), Postives = 157/178 (88.20%), Query Frame = 1


Query: 42  AAMQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARG 101
           AAMQSQLVC+GCR+ LLYP GATNVCCALCNT+T+VPPPG DM+QL C GCRTLLMY RG
Sbjct: 12  AAMQSQLVCNGCRNTLLYPRGATNVCCALCNTITAVPPPGMDMSQLYCGGCRTLLMYTRG 71

Query: 102 ATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRV 161
           ATSVRCSCCHTVNLAP +NQVAHV CGNCRTTL++PYGAPSVKCA+CHY+TN+ MSN R+
Sbjct: 72  ATSVRCSCCHTVNLAPVSNQVAHVPCGNCRTTLMYPYGAPSVKCAVCHYITNINMSNGRL 131

Query: 162 PIPVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 215
           PIP HR +GT  SGM P++S     SQSQTVVVENPMSVD SGKLVSN+VVGVTTDK+
Sbjct: 132 PIPGHRPHGTTDSGMLPSTSTSMPQSQSQTVVVENPMSVDSSGKLVSNVVVGVTTDKK 189

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BLAST of CmoCh07G000380 vs. TrEMBL
Match: A0A061G6R7_THECC (LSD1 zinc finger family protein isoform 1 OS=Theobroma cacao GN=TCM_026947 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 5.1e-75
Identity = 138/171 (80.70%), Postives = 154/171 (90.06%), Query Frame = 1


Query: 44  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGAT 103
           MQSQLVCSGCRSILLYP GA NVCCALCNTVT VPPPG DMAQLIC GCRTLLMY RGAT
Sbjct: 1   MQSQLVCSGCRSILLYPRGAANVCCALCNTVTQVPPPGNDMAQLICGGCRTLLMYTRGAT 60

Query: 104 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPI 163
           SVRCSCCHT+N A A+NQ+AH+NCG+CRTTL++PYGAPSVKCA+C YVTNVGM NVRVP+
Sbjct: 61  SVRCSCCHTINFAQASNQIAHINCGHCRTTLMYPYGAPSVKCAVCQYVTNVGMGNVRVPL 120

Query: 164 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 215
           PV+R NG  ++G  P S+S SQTVVVENPMSVDESGKLV+N+VVGVTTDK+
Sbjct: 121 PVNRPNGVAATGTTP-STSTSQTVVVENPMSVDESGKLVTNVVVGVTTDKK 170

[Close]

BLAST of CmoCh07G000380 vs. TAIR10
Match: AT1G32540.1 (AT1G32540.1 lsd one like 1)

HSP 1 Score: 186.0 bits (471), Expect = 2.4e-47
Identity = 84/113 (74.34%), Postives = 99/113 (87.61%), Query Frame = 1


Query: 45  QSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGATS 104
           QSQLVCSGCR++L+YP GAT+VCCA+CN VT+VPPPGT+MAQL+C GC TLLMY RGATS
Sbjct: 65  QSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLVCGGCHTLLMYIRGATS 124

Query: 105 VRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMS 158
           V+CSCCHTVNLA   NQVAHVNCGNC   L++ YGA SVKCA+C++VT+VG S
Sbjct: 125 VQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQYGARSVKCAVCNFVTSVGGS 177

[Close]

BLAST of CmoCh07G000380 vs. TAIR10
Match: AT4G20380.8 (AT4G20380.8 LSD1 zinc finger family protein)

HSP 1 Score: 159.5 bits (402), Expect = 2.4e-39
Identity = 91/175 (52.00%), Postives = 120/175 (68.57%), Query Frame = 1


Query: 46  SQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPG-TDMAQLICRGCRTLLMYARGATS 105
           + ++C GCR++L+Y  GA++V C+ C T   VP    T +   I +  +T L+   G  +
Sbjct: 44  AHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPESSFTLLFDNILKVLKTKLLDGPGGLA 103

Query: 106 VRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPIP 165
                 H    AP++ QVA +NCG+CRTTL++PYGA SVKCA+C +VTNV MSN RVP+P
Sbjct: 104 HSNQVAH----APSS-QVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLP 163

Query: 166 VHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 215
            +R NGT     PP++S     SQ+QTVVVENPMSVDESGKLVSN+VVGVTTDK+
Sbjct: 164 TNRPNGT---ACPPSTSTSTPPSQTQTVVVENPMSVDESGKLVSNVVVGVTTDKK 210

[Close]

BLAST of CmoCh07G000380 vs. TAIR10
Match: AT4G21610.1 (AT4G21610.1 lsd one like 2)

HSP 1 Score: 92.4 bits (228), Expect = 3.6e-19
Identity = 49/111 (44.14%), Postives = 68/111 (61.26%), Query Frame = 1


Query: 52  GCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGATSVRCSCCH 111
           G  S +L P   T +  A+    T+V  P  + AQ++C  CR LL Y RG+  V+CS C 
Sbjct: 29  GWESAVLPPPIVT-ITAAVNPNPTTVEIP--EKAQMVCGSCRRLLSYLRGSKHVKCSSCQ 88

Query: 112 TVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVP 163
           TVNL    NQV  VNC NC+  L++PYGAP+V+C+ C+ VT++  +N R P
Sbjct: 89  TVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of CmoCh07G000380 vs. NCBI nr
Match: gi|778722610|ref|XP_011658526.1| (PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 [Cucumis sativus])

HSP 1 Score: 345.9 bits (886), Expect = 5.1e-92
Identity = 174/204 (85.29%), Postives = 183/204 (89.71%), Query Frame = 1


Query: 11  DVIVSVDNQCSREEDRDKSTLSKLLIFSLNVAAMQSQLVCSGCRSILLYPGGATNVCCAL 70
           D+IVS++N+ SR    +               AMQSQLVCSGCRSILLYPGGATNVCCAL
Sbjct: 218 DLIVSLENRWSRGGSGE---------------AMQSQLVCSGCRSILLYPGGATNVCCAL 277

Query: 71  CNTVTSVPPPGTDMAQLICRGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNC 130
           CNTVTSVPPPGTDMAQLIC GCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNC
Sbjct: 278 CNTVTSVPPPGTDMAQLICGGCRTLLMYARGATSVRCSCCHTVNLAPATNQVAHVNCGNC 337

Query: 131 RTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPIPVHRRNGTISSGMPPASSSQSQTVVVE 190
           RTTL+FPYGAPSVKCAICHYVTNVG+SNVRVPIPVHRRNGTISSGMPP+SSSQSQTVVVE
Sbjct: 338 RTTLVFPYGAPSVKCAICHYVTNVGISNVRVPIPVHRRNGTISSGMPPSSSSQSQTVVVE 397

Query: 191 NPMSVDESGKLVSNLVVGVTTDKR 215
           NPMSVDESGKLVSN+VVGVTTDKR
Sbjct: 398 NPMSVDESGKLVSNVVVGVTTDKR 406

[Close]

BLAST of CmoCh07G000380 vs. NCBI nr
Match: gi|659078006|ref|XP_008439499.1| (PREDICTED: protein LSD1 [Cucumis melo])

HSP 1 Score: 342.0 bits (876), Expect = 7.3e-91
Identity = 166/171 (97.08%), Postives = 170/171 (99.42%), Query Frame = 1


Query: 44  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGAT 103
           MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLIC GCRTLLMYARGAT
Sbjct: 1   MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICGGCRTLLMYARGAT 60

Query: 104 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPI 163
           SVRCSCCHTVNLAPATNQVAHVNCGNCRTTL+FPYGAPSVKCAICHYVTNVG+SNVRVPI
Sbjct: 61  SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLVFPYGAPSVKCAICHYVTNVGISNVRVPI 120

Query: 164 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 215
           PVHRRNGTISSGMPP+SSSQSQTVVVENPMSVDESGKLVSN+VVGVTTDKR
Sbjct: 121 PVHRRNGTISSGMPPSSSSQSQTVVVENPMSVDESGKLVSNVVVGVTTDKR 171

[Close]

BLAST of CmoCh07G000380 vs. NCBI nr
Match: gi|645238477|ref|XP_008225697.1| (PREDICTED: protein LSD1 [Prunus mume])

HSP 1 Score: 302.8 bits (774), Expect = 4.9e-79
Identity = 147/176 (83.52%), Postives = 162/176 (92.05%), Query Frame = 1


Query: 44  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGAT 103
           MQSQLVCSGCRSILLYP GATNVCCALCN +T VPPPGT+MAQLIC GCRTLLM+ RGAT
Sbjct: 1   MQSQLVCSGCRSILLYPRGATNVCCALCNIITPVPPPGTEMAQLICGGCRTLLMHTRGAT 60

Query: 104 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPI 163
           SVRCSCCHTVNLAPA++QVAHVNCGNCRTTL++PYGAPSVKCA+CHYVTNVGM+N+RVPI
Sbjct: 61  SVRCSCCHTVNLAPASSQVAHVNCGNCRTTLMYPYGAPSVKCAVCHYVTNVGMTNMRVPI 120

Query: 164 PVHRRNGTISSGMPPASS-----SQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 215
           PVHR NGT +SGM P++S     SQSQTVVVENPMSVDESGKLVSN+VVGVTT K+
Sbjct: 121 PVHRPNGTANSGMAPSTSAAMPHSQSQTVVVENPMSVDESGKLVSNVVVGVTTGKK 176

[Close]

BLAST of CmoCh07G000380 vs. NCBI nr
Match: gi|658027410|ref|XP_008349140.1| (PREDICTED: protein LSD1-like [Malus domestica])

HSP 1 Score: 301.6 bits (771), Expect = 1.1e-78
Identity = 146/176 (82.95%), Postives = 162/176 (92.05%), Query Frame = 1


Query: 39  LNVAAMQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMY 98
           L +AAMQSQLVCSGCRSILLYP GATNVCCALCN +T VPPPGT+MAQLIC GCRTLLM+
Sbjct: 3   LKIAAMQSQLVCSGCRSILLYPRGATNVCCALCNIITPVPPPGTEMAQLICGGCRTLLMH 62

Query: 99  ARGATSVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSN 158
            RGATSVRC+CCHTVNLAPA++QVAH+NCGNCRTTL++PYGAPSVKCA+C YVTNVGMSN
Sbjct: 63  TRGATSVRCACCHTVNLAPASSQVAHINCGNCRTTLMYPYGAPSVKCALCQYVTNVGMSN 122

Query: 159 VRVPIPVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 215
           +RVPIP HR NGT +SGM P S+S SQTVVVENPMSVDESGKLVSN+VVGVTT K+
Sbjct: 123 MRVPIPAHRPNGTTNSGMVP-STSASQTVVVENPMSVDESGKLVSNVVVGVTTGKK 177

[Close]

BLAST of CmoCh07G000380 vs. NCBI nr
Match: gi|595875076|ref|XP_007212162.1| (hypothetical protein PRUPE_ppa012421mg [Prunus persica])

HSP 1 Score: 299.3 bits (765), Expect = 5.4e-78
Identity = 145/171 (84.80%), Postives = 159/171 (92.98%), Query Frame = 1


Query: 44  MQSQLVCSGCRSILLYPGGATNVCCALCNTVTSVPPPGTDMAQLICRGCRTLLMYARGAT 103
           MQSQLVCSGCRSILLYP GATNVCCALCN +T VPPPGT+MAQLIC GCRTLLM+ RGAT
Sbjct: 1   MQSQLVCSGCRSILLYPRGATNVCCALCNIITPVPPPGTEMAQLICGGCRTLLMHTRGAT 60

Query: 104 SVRCSCCHTVNLAPATNQVAHVNCGNCRTTLIFPYGAPSVKCAICHYVTNVGMSNVRVPI 163
           SVRCSCCHTVNLAPA++QVAHVNCGNCRTTL++PYGAPSVKCA+CHYVTNVGM+N+RVPI
Sbjct: 61  SVRCSCCHTVNLAPASSQVAHVNCGNCRTTLMYPYGAPSVKCAVCHYVTNVGMTNMRVPI 120

Query: 164 PVHRRNGTISSGMPPASSSQSQTVVVENPMSVDESGKLVSNLVVGVTTDKR 215
           PVHR NGT +SG  P S+S SQTVVVENPMSVDESGKLVSN+VVGVTT K+
Sbjct: 121 PVHRPNGTANSGTAP-STSASQTVVVENPMSVDESGKLVSNVVVGVTTGKK 170

The following BLAST results are available for this feature:

BLAST of CmoCh07G000380 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LSD1_ARATH	1.1e-62	65.63	Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1	[more]
LOL3_ORYSJ	3.4e-56	60.22	Protein LOL3 OS=Oryza sativa subsp. japonica GN=LOL3 PE=2 SV=1	[more]
LOL2_ORYSJ	1.4e-54	62.72	Protein LOL2 OS=Oryza sativa subsp. japonica GN=LOL2 PE=2 SV=1	[more]
LSD1_ORYSJ	1.4e-46	74.34	Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1	[more]
LOL1_ARATH	4.2e-46	74.34	Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1	[more]

BLAST of CmoCh07G000380 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KJ18_CUCSA	5.1e-91	97.08	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G526320 PE=4 SV=1	[more]
M5WHS3_PRUPE	3.8e-78	84.80	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa012421mg PE=4 SV=1	[more]
G7L9L5_MEDTR	1.8e-75	78.65	LSD1-type zinc finger protein OS=Medicago truncatula GN=MTR_8g089310 PE=4 SV=1	[more]
G7L9L4_MEDTR	1.8e-75	78.65	LSD1-type zinc finger protein OS=Medicago truncatula GN=MTR_8g089310 PE=4 SV=2	[more]
A0A061G6R7_THECC	5.1e-75	80.70	LSD1 zinc finger family protein isoform 1 OS=Theobroma cacao GN=TCM_026947 PE=4 ...	[more]

BLAST of CmoCh07G000380 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G32540.1	2.4e-47	74.34	lsd one like 1	[more]
AT4G20380.8	2.4e-39	52.00	LSD1 zinc finger family protein	[more]
AT4G21610.1	3.6e-19	44.14	lsd one like 2	[more]

BLAST of CmoCh07G000380 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778722610\|ref\|XP_011658526.1\|	5.1e-92	85.29	PREDICTED: vacuolar protein sorting-associated protein 2 homolog 2 [Cucumis sati...	[more]
gi\|659078006\|ref\|XP_008439499.1\|	7.3e-91	97.08	PREDICTED: protein LSD1 [Cucumis melo]	[more]
gi\|645238477\|ref\|XP_008225697.1\|	4.9e-79	83.52	PREDICTED: protein LSD1 [Prunus mume]	[more]
gi\|658027410\|ref\|XP_008349140.1\|	1.1e-78	82.95	PREDICTED: protein LSD1-like [Malus domestica]	[more]
gi\|595875076\|ref\|XP_007212162.1\|	5.4e-78	84.80	hypothetical protein PRUPE_ppa012421mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005735	Znf_LSD1
IPR011031	Multihaem_cyt

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010618	aerenchyma formation
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:0009651	response to salt stress
biological_process	GO:0009743	response to carbohydrate
biological_process	GO:0009733	response to auxin
biological_process	GO:0009737	response to abscisic acid
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0006914	autophagy
biological_process	GO:0000303	response to superoxide
biological_process	GO:0009751	response to salicylic acid
biological_process	GO:0002240	response to molecule of oomycetes origin
biological_process	GO:0001666	response to hypoxia
biological_process	GO:0043067	regulation of programmed cell death
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0010104	regulation of ethylene-activated signaling pathway
biological_process	GO:0010602	regulation of 1-aminocyclopropane-1-carboxylate metabolic process
biological_process	GO:0009863	salicylic acid mediated signaling pathway
cellular_component	GO:0005667	transcription factor complex
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0016787	hydrolase activity
molecular_function	GO:0003700	transcription factor activity, sequence-specific DNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh07G000380.1	CmoCh07G000380.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 50..74 score: 4.9E-10coord: 89..113 score: 6.6E-12coord: 127..151 score: 1.2
IPR005735	Zinc finger, LSD1-type	TIGRFAMs	TIGR01053	TIGR01053	coord: 124..154 score: 3.4E-11coord: 47..77 score: 8.9E-12coord: 86..115 score: 9.1
IPR011031	Multihaem cytochrome	unknown	SSF48695	Multiheme cytochromes	coord: 50..150 score: 2.5
None	No IPR available	GENE3D	G3DSA:3.90.10.10		coord: 28..150 score: 4.
None	No IPR available	PANTHER	PTHR31747	FAMILY NOT NAMED	coord: 42..214 score: 2.5E
None	No IPR available	PANTHER	PTHR31747:SF3	PROTEIN LSD1	coord: 42..214 score: 2.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh07G000380	Cucsa.048600	Cucumber (Gy14) v1	cgycmoB0043
CmoCh07G000380	Cla009861	Watermelon (97103) v1	cmowmB816
CmoCh07G000380	Cla019503	Watermelon (97103) v1	cmowmB809
CmoCh07G000380	Csa6G526320	Cucumber (Chinese Long) v2	cmocuB865
CmoCh07G000380	MELO3C007039	Melon (DHL92) v3.5.1	cmomeB782
CmoCh07G000380	ClCG03G006020	Watermelon (Charleston Gray)	cmowcgB760
CmoCh07G000380	ClCG01G025450	Watermelon (Charleston Gray)	cmowcgB755
CmoCh07G000380	CSPI06G37190	Wild cucumber (PI 183967)	cmocpiB873
CmoCh07G000380	Cp4.1LG19g05490	Cucurbita pepo (Zucchini)	cmocpeB817
CmoCh07G000380	MELO3C007039.2	Melon (DHL92) v3.6.1	cmomedB886
CmoCh07G000380	CsaV3_6G052700	Cucumber (Chinese Long) v3	cmocucB1019
CmoCh07G000380	Cla97C01G025590	Watermelon (97103) v2	cmowmbB849
CmoCh07G000380	Cla97C03G057330	Watermelon (97103) v2	cmowmbB857
CmoCh07G000380	Bhi03G000183	Wax gourd	cmowgoB1062

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh07G000380	Cucurbita moschata (Rifu)	cmocmoB459
CmoCh07G000380	Cucurbita maxima (Rimu)	cmacmoB672
CmoCh07G000380	Cucurbita maxima (Rimu)	cmacmoB875
CmoCh07G000380	Cucurbita pepo (Zucchini)	cmocpeB801
CmoCh07G000380	Bottle gourd (USVL1VR-Ls)	cmolsiB770
CmoCh07G000380	Bottle gourd (USVL1VR-Ls)	cmolsiB774
CmoCh07G000380	Cucumber (Gy14) v2	cgybcmoB843
CmoCh07G000380	Silver-seed gourd	carcmoB0410
CmoCh07G000380	Silver-seed gourd	carcmoB0996