Cla019503 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla019503
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Zinc finger protein LSD1 (AHRD V1 **-- F8RP38_PEA); contains Interpro domain(s) IPR005735 Zinc finger, LSD1-type
Location	Chr3 : 5959267 .. 5961442 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTGTCAGTGCTTCCGAGGGTTATTTCAGATTTTGTGTTTGCGAATCTTCGTCTTGGTTTTGAGATTCGAAGCATTTAATTATTTCCCATCTCTGGCCCTTTATACATCTGATTGAACTTCTGTTGATTGAATTCAAAACTTAAGCTGACATTTTTCTTTTGTGAGTGAATCAATTTGGTGGTTGCTTCCCACTTCTTATAACGGTGAATATGTTAACCTAAGTTAGCAGGAAAACTCTTTCTAAAATTAATCCAATTCACATCTGTGCAGTGTGTGTTATTAATCCGCATACACAATTGTATTCACACGTAGTTTCAGTTCATGGAATCGATTTTCATCCAACAAAAGCGCATAGAAGTTGGGGCATTCTTGCTAGCATGTTTAATTGCAAGTCCCAAATATTGTAATTGTTCTCACTGGAAACGTTTTGATCTGCAGCCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGGTTCCTTCTCTTTTCCTTCCTTCTTTTTAGGTTTTTCTATTATTTTCTTCCTCAAAAGTTGTCTTGTTCATATGCTGTTGGGTTTTTGCTAATTTTTAAGAGCCCCAATTCCCATGTATGTTGGTTTCCAAATGCCATTAGCACTTCCAAACTCTATGCTCTTCAATTCTGTTTTCTTTCTACTGCGTCCTCTTTCATTAGAGGGTCAAGTGTTCGGTTTTAACTCTGAATATCTTTTTCTTGTGCTAGTTCTGGGTGGTGCCTGTGTACCCCATTATGTGATTGTGCCTCCAAACATTAATGCTCTACATAAAACCAAATATTGTAGGATTTATGATACTTTTCAGATGGGTCATAGATGAGTTTAGGTGGTCTTACAGACATTGAAATCTGAATCATTTTCCCCCTTTCCTGCATTCAAAGTATCCACATCTTAGCCACCAAGTACAATTGTTGAGTTCGATCAACTCATCCTTAGGACGAGCCAACACTAGACCAGTTTATAAATTAAATAACTGTATACAGCCTGAAATCCAAATGATCATTACTTTTTCCATTTCCATTTCTTTTCAATACATGCTTGTATCTGGATGTTAAAAGCAAATTTTGGCTTTCCAGAAGGGTTTCTACTATGTGCGTGTAATTGTCCAAGTATTCTGTCCTTCCCGTTGTATTAATAGGTACTCTATTGTAGATTGATTGAATTTTGAAGATTTTAGCTGATGGGATTAGATTAGAGTCTAATTCTCCTTGAAAACTCTCATTTCCTAGAATTTGGGTTCAGTGGATGTAATCAATCATTTCTAGAATCTGCTGAAAAAATGAAATTCATGTTTAGAAGAAAAATACTTCAGCATAACATTTTTTGGCAGTTCAAATCTATATTGTTCTGAAAAGTTCACGTCTGTCCCAAGGCAGTTCAAGTTTATCTATACAATTTTTACTTAATTAGTCTTTATAACGACTTGCTGTCAATGTCTTATGATTCAGCTTTTCCTTTTCTTTTATTAACACCTCTTCATTCTCCTTTCAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTATGTCACTCCACATTCTGGCAAAGTTCTTGCTTGGAATATGCTTAAATACATATCGTACAGTCTAAATCTTTATAGTTGTCTCCTTCATTCATGGTTAAATTACAAATTTCAGTCTATATGGTTTGAAGAAAGTTAGAATTTAGTTTTTATGGTTTGATAAAACCTCATAAATAGTTCTTGTGGATTTTAATTATGCTTTTGTTTGCGAGTTCACATTTATGGAAACGAGGGTGACGGTTACGGTAATTTCAACTGTTTCTTTGCTTTGATGCTTGATTTTTTTTATTCATCGGCTTTAAGTGGCTGTGCAGGTGCATAACAGGCGTCCACCGTGGTCTGTCCAGCAGGGACAAGGAGCCCCTCCTACCAACTTTGTCCAGTAG

mRNA sequence

ATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTCCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTGCATAACAGGCGTCCACCGTGGTCTGTCCAGCAGGGACAAGGAGCCCCTCCTACCAACTTTGTCCAGTAG

Coding sequence (CDS)

ATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTCCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTGCATAACAGGCGTCCACCGTGGTCTGTCCAGCAGGGACAAGGAGCCCCTCCTACCAACTTTGTCCAGTAG

Protein sequence

MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQGAPPTNFVQ

Homology

[Close]

BLAST of Cla019503 vs. Swiss-Prot
Match: LOL2_ARATH (Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.1e-36
Identity = 71/126 (56.35%), Postives = 91/126 (72.22%), Query Frame = 1


Query: 5   EIDKDEDDGPPPGWEPITPPLPLP-------PPPLSSDM---AQMVCGTCRRLLKYLKGA 64
           E +++E++GPPPGWE    P P+        P P + ++   AQMVCG+CRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP 121
           + V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of Cla019503 vs. Swiss-Prot
Match: LOL5_ORYSJ (Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 2.0e-27
Identity = 58/105 (55.24%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 16  PGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEV 75
           P  +   P +P PP P L+ ++ QMVCG+CR LL Y +GA  V C+CC T+N+VLEAHEV
Sbjct: 47  PCLQDSVPLVPPPPSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEV 106

Query: 76  GQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           G+V CG CA LLMYP+GA +V+CS C  VTEIG  N R   S++Q
Sbjct: 107 GKVHCGHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQ 151

[Close]

BLAST of Cla019503 vs. Swiss-Prot
Match: LOL1_ARATH (Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 4.4e-22
Identity = 45/78 (57.69%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 30  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYP 89
           PP  ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLMY 
Sbjct: 65  PPPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLMYQ 124

Query: 90  YGASSVRCSSCTSVTEIG 108
           YGA SV+C+ C  VT +G
Sbjct: 125 YGARSVKCAVCNFVTSVG 142

HSP 2 Score: 38.9 bits (89), Expect = 5.0e-02
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = 1


Query: 76  QVKCGSCAVLLMYPYGASSVRCSSCTSVTEI 107
           Q+ C  C  LLMYP GA+SV C+ C +VT +
Sbjct: 34  QLVCSGCRNLLMYPVGATSVCCAVCNAVTAV 64

[Close]

BLAST of Cla019503 vs. Swiss-Prot
Match: LSD1_ARATH (Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1)

HSP 1 Score: 102.1 bits (253), Expect = 4.8e-21
Identity = 48/111 (43.24%), Postives = 61/111 (54.95%), Query Frame = 1


Query: 27  LPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFV---------LEAHEVGQV 86
           +PPPP   DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V Q+
Sbjct: 39  VPPPPPPHDMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVAQI 98

Query: 87  KCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ--GQGAPPT 127
            CG C   LMYPYGASSV+C+ C  VT + + N R P    +  G   PP+
Sbjct: 99  NCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

HSP 2 Score: 72.8 bits (177), Expect = 3.1e-12
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1


Query: 38  QMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEA---HEVGQVKCGSCAVLLMYPYGASS 97
           Q+VC  CR LL Y +GA  V+C+ C+T+N V      H++  + CG C  +LMY  GASS
Sbjct: 9   QLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASS 68

Query: 98  VRCSSCTSVTEIGVHNRR 113
           VRCS C +   +  H+ +
Sbjct: 69  VRCSCCQTTNLVPAHSNQ 86

[Close]

BLAST of Cla019503 vs. Swiss-Prot
Match: LSD1_ORYSJ (Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.3e-21
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1


Query: 30  PPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYP 89
           P   ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY 
Sbjct: 96  PAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQ 155

Query: 90  YGASSVRCSSCTSVTEIG 108
           YGA SV+C+ C  VT +G
Sbjct: 156 YGARSVKCAVCNFVTSVG 173

HSP 2 Score: 76.3 bits (186), Expect = 2.8e-13
Identity = 40/83 (48.19%), Postives = 49/83 (59.04%), Query Frame = 1


Query: 22  TPPLPLPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFV-LEAHEVGQVKCG 81
           TPP+P  PP  +   +Q+VC  CR LL Y  GA  V C+ CSTV  V     E+ Q+ CG
Sbjct: 51  TPPVPFTPP--NGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVCG 110

Query: 82  SCAVLLMYPYGASSVRCSSCTSV 104
            C  LLMY  GA+SV+CS C +V
Sbjct: 111 GCHTLLMYIRGATSVQCSCCHTV 131

[Close]

BLAST of Cla019503 vs. TrEMBL
Match: A0A0A0LXE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 9.7e-69
Identity = 125/131 (95.42%), Postives = 126/131 (96.18%), Query Frame = 1


Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of Cla019503 vs. TrEMBL
Match: V4W8M3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017149mg PE=4 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-49
Identity = 93/124 (75.00%), Postives = 107/124 (86.29%), Query Frame = 1


Query: 7   DKDEDDGPPPGWEPITPPLPLPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVN 66
           +++E+ GPPPGW+PI PPLP+P P   S+MAQMVCG+CR+LL Y +GAR V+CSCC TVN
Sbjct: 13  EENEEAGPPPGWQPIPPPLPVPSP---SEMAQMVCGSCRQLLAYPRGARHVKCSCCQTVN 72

Query: 67  FVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQGAPPT 126
           FVLEAH+VGQVKC SCAVLLMYPYGASSVRCSSC  VTEIG HNRR PWSVQQGQ APP+
Sbjct: 73  FVLEAHQVGQVKCASCAVLLMYPYGASSVRCSSCRFVTEIGDHNRRAPWSVQQGQSAPPS 132

Query: 127 NFVQ 131
           N V+
Sbjct: 133 NTVR 133

[Close]

BLAST of Cla019503 vs. TrEMBL
Match: A0A061GEH3_THECC (Lsd one like 2 OS=Theobroma cacao GN=TCM_029880 PE=4 SV=1)

HSP 1 Score: 194.9 bits (494), Expect = 6.1e-47
Identity = 88/118 (74.58%), Postives = 100/118 (84.75%), Query Frame = 1


Query: 8   KDEDDGPPPGWEPITPPLPLPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNF 67
           ++E++GPPPGW+ I PP   P PP SS+MAQMVCG+CR+LL Y +GAR  +CSCC TVNF
Sbjct: 16  EEEEEGPPPGWQSIPPP---PQPPPSSEMAQMVCGSCRQLLSYPRGARQAKCSCCETVNF 75

Query: 68  VLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQGAPP 126
           VLEAH+VG VKCGSCAVLLMYP+GASSVRCSSC  VTEIG HNRRPPWSVQQGQ  PP
Sbjct: 76  VLEAHQVGLVKCGSCAVLLMYPFGASSVRCSSCQFVTEIGAHNRRPPWSVQQGQPTPP 130

[Close]

BLAST of Cla019503 vs. TrEMBL
Match: A0A072UPT8_MEDTR (LSD1-type zinc finger protein OS=Medicago truncatula GN=MTR_4g088850 PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 4.0e-46
Identity = 88/124 (70.97%), Postives = 100/124 (80.65%), Query Frame = 1


Query: 4   HEIDKDEDDGPPPGWEPITPPL-PLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQCSC 63
           H+++K++DDGPPPGW+PI PP  P PPPP L S  AQMVCG+CRRLL Y  GA+ V+CSC
Sbjct: 6   HQVNKEDDDGPPPGWQPIPPPQRPRPPPPSLPSGFAQMVCGSCRRLLSYPPGAKHVKCSC 65

Query: 64  CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQ 123
           C TVN VLEA +VGQVKCGSCAVLLMYPYGA  VRCSSC  VTEIG  N+RPPWSVQQ +
Sbjct: 66  CQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQVRCSSCRFVTEIGADNKRPPWSVQQSK 125

Query: 124 GAPP 126
             PP
Sbjct: 126 PTPP 129

[Close]

BLAST of Cla019503 vs. TrEMBL
Match: B9H2V4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04310g PE=4 SV=2)

HSP 1 Score: 186.4 bits (472), Expect = 2.2e-44
Identity = 88/129 (68.22%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 2   DVHEIDKDEDDGPPPGW-----EPITPPLPLPPPPLSSDMAQMVCGTCRRLLKYLKGARC 61
           D+ E +++E++GPPPGW     EP  PP P PPPP  S++ QMVCG+CRRLL Y KG R 
Sbjct: 7   DMAEAEEEEEEGPPPGWQSFPPEPSLPPPPTPPPP-PSELGQMVCGSCRRLLSYPKGVRH 66

Query: 62  VQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWS 121
           VQC CC  +NFVLEAHEVGQVKCGSC VLLMYPYGASSVRCSSC  VTEIG  NRRPPWS
Sbjct: 67  VQCQCCQMINFVLEAHEVGQVKCGSCDVLLMYPYGASSVRCSSCRFVTEIGEQNRRPPWS 126

Query: 122 VQQGQGAPP 126
           V QG    P
Sbjct: 127 VIQGYPPRP 134

[Close]

BLAST of Cla019503 vs. NCBI nr
Match: gi|449457731|ref|XP_004146601.1| (PREDICTED: protein LOL2 isoform X2 [Cucumis sativus])

HSP 1 Score: 267.3 bits (682), Expect = 1.4e-68
Identity = 125/131 (95.42%), Postives = 126/131 (96.18%), Query Frame = 1


Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of Cla019503 vs. NCBI nr
Match: gi|778658738|ref|XP_011653178.1| (PREDICTED: protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 263.5 bits (672), Expect = 2.0e-67
Identity = 123/132 (93.18%), Postives = 125/132 (94.70%), Query Frame = 1


Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPL--SSDMAQMVCGTCRRLLKYLKGARCVQ 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPPPP   S+DMAQMVCGTCRRLLKYLKGAR VQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 
Sbjct: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120

Query: 121 QGQGAPPTNFVQ 131
           QGQ APPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]

BLAST of Cla019503 vs. NCBI nr
Match: gi|659068064|ref|XP_008442544.1| (PREDICTED: protein LOL2 isoform X4 [Cucumis melo])

HSP 1 Score: 260.0 bits (663), Expect = 2.2e-66
Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 1


Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120
           S CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]

BLAST of Cla019503 vs. NCBI nr
Match: gi|659068062|ref|XP_008442535.1| (PREDICTED: protein LOL2 isoform X3 [Cucumis melo])

HSP 1 Score: 256.9 bits (655), Expect = 1.9e-65
Identity = 122/132 (92.42%), Postives = 123/132 (93.18%), Query Frame = 1


Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPLSS--DMAQMVCGTCRRLLKYLKGARCVQ 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P  S  DMAQMVCGTCRRLLKYLKGAR VQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120
           CS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120

Query: 121 QGQGAPPTNFVQ 131
           QGQ APPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]

BLAST of Cla019503 vs. NCBI nr
Match: gi|659068060|ref|XP_008442526.1| (PREDICTED: protein LOL2 isoform X2 [Cucumis melo])

HSP 1 Score: 213.8 bits (543), Expect = 1.8e-52
Identity = 105/130 (80.77%), Postives = 109/130 (83.85%), Query Frame = 1


Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHN--------- 117
           S CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG+ +         
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGIRHGCVETNPSH 120

The following BLAST results are available for this feature:

BLAST of Cla019503 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LOL2_ARATH	3.1e-36	56.35	Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=1 SV=1	[more]
LOL5_ORYSJ	2.0e-27	55.24	Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1	[more]
LOL1_ARATH	4.4e-22	57.69	Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1	[more]
LSD1_ARATH	4.8e-21	43.24	Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1	[more]
LSD1_ORYSJ	6.3e-21	55.13	Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1	[more]

BLAST of Cla019503 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXE3_CUCSA	9.7e-69	95.42	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073830 PE=4 SV=1	[more]
V4W8M3_9ROSI	1.7e-49	75.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017149mg PE=4 SV=1	[more]
A0A061GEH3_THECC	6.1e-47	74.58	Lsd one like 2 OS=Theobroma cacao GN=TCM_029880 PE=4 SV=1	[more]
A0A072UPT8_MEDTR	4.0e-46	70.97	LSD1-type zinc finger protein OS=Medicago truncatula GN=MTR_4g088850 PE=4 SV=1	[more]
B9H2V4_POPTR	2.2e-44	68.22	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04310g PE=4 SV=2	[more]

BLAST of Cla019503 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449457731\|ref\|XP_004146601.1\|	1.4e-68	95.42	PREDICTED: protein LOL2 isoform X2 [Cucumis sativus]	[more]
gi\|778658738\|ref\|XP_011653178.1\|	2.0e-67	93.18	PREDICTED: protein LOL2 isoform X1 [Cucumis sativus]	[more]
gi\|659068064\|ref\|XP_008442544.1\|	2.2e-66	93.89	PREDICTED: protein LOL2 isoform X4 [Cucumis melo]	[more]
gi\|659068062\|ref\|XP_008442535.1\|	1.9e-65	92.42	PREDICTED: protein LOL2 isoform X3 [Cucumis melo]	[more]
gi\|659068060\|ref\|XP_008442526.1\|	1.8e-52	80.77	PREDICTED: protein LOL2 isoform X2 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005735	Znf_LSD1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0009626	plant-type hypersensitive response
biological_process	GO:0009617	response to bacterium
biological_process	GO:0000303	response to superoxide
biological_process	GO:0009751	response to salicylic acid
biological_process	GO:0002240	response to molecule of oomycetes origin
biological_process	GO:0001666	response to hypoxia
biological_process	GO:0043067	regulation of programmed cell death
biological_process	GO:0010310	regulation of hydrogen peroxide metabolic process
biological_process	GO:0010104	regulation of ethylene-activated signaling pathway
biological_process	GO:0010602	regulation of 1-aminocyclopropane-1-carboxylate metabolic process
biological_process	GO:0010618	aerenchyma formation
biological_process	GO:0007034	vacuolar transport
biological_process	GO:0000226	microtubule cytoskeleton organization
biological_process	GO:0016572	histone phosphorylation
biological_process	GO:0051567	histone H3-K9 methylation
biological_process	GO:0006260	DNA replication
biological_process	GO:0006306	DNA methylation
biological_process	GO:0000911	cytokinesis by cell plate formation
biological_process	GO:0008283	cell proliferation
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0000815	ESCRT III complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU68987	watermelon EST collection version 2.0	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla019503	Cla019503.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU68987	WMU68987	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 41..65 score: 8.3E-7coord: 79..103 score: 6.1
IPR005735	Zinc finger, LSD1-type	TIGRFAMs	TIGR01053	TIGR01053	coord: 76..105 score: 3.3E-12coord: 38..68 score: 2.3
None	No IPR available	PANTHER	PTHR31747	FAMILY NOT NAMED	coord: 1..121 score: 1.8
None	No IPR available	PANTHER	PTHR31747:SF4	PROTEIN LOL2	coord: 1..121 score: 1.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla019503	Cla97C03G057330	Watermelon (97103) v2	wmwmbB124
Cla019503	Csa1G073830	Cucumber (Chinese Long) v2	cuwmB008
Cla019503	MELO3C002600	Melon (DHL92) v3.5.1	mewmB149
Cla019503	ClCG03G006020	Watermelon (Charleston Gray)	wcgwmB223
Cla019503	CSPI01G12090	Wild cucumber (PI 183967)	cpiwmB010
Cla019503	Cucsa.126650	Cucumber (Gy14) v1	cgywmB205
Cla019503	CmaCh07G000360	Cucurbita maxima (Rimu)	cmawmB819
Cla019503	CmaCh03G014730	Cucurbita maxima (Rimu)	cmawmB622
Cla019503	CmaCh13G006470	Cucurbita maxima (Rimu)	cmawmB188
Cla019503	CmoCh13G006650	Cucurbita moschata (Rifu)	cmowmB176
Cla019503	CmoCh07G000380	Cucurbita moschata (Rifu)	cmowmB809
Cla019503	Lsi02G007490	Bottle gourd (USVL1VR-Ls)	lsiwmB184
Cla019503	Cp4.1LG10g06590	Cucurbita pepo (Zucchini)	cpewmB069
Cla019503	Cp4.1LG19g05490	Cucurbita pepo (Zucchini)	cpewmB478
Cla019503	Cp4.1LG20g04270	Cucurbita pepo (Zucchini)	cpewmB503
Cla019503	CsGy1G012110	Cucumber (Gy14) v2	cgybwmB010
Cla019503	MELO3C002600.2	Melon (DHL92) v3.6.1	medwmB145
Cla019503	Carg19340	Silver-seed gourd	carwmB0291
Cla019503	Carg21497	Silver-seed gourd	carwmB0948
Cla019503	CsaV3_1G012280	Cucumber (Chinese Long) v3	cucwmB013
Cla019503	Bhi08G001280	Wax gourd	wgowmB478

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla019503	Silver-seed gourd	carwmB0142
Cla019503	Watermelon (97103) v2	wmwmbB117
Cla019503	Watermelon (97103) v1	wmwmB095
Cla019503	Cucurbita maxima (Rimu)	cmawmB025
Cla019503	Cucurbita maxima (Rimu)	cmawmB367
Cla019503	Cucurbita moschata (Rifu)	cmowmB017
Cla019503	Cucurbita moschata (Rifu)	cmowmB360
Cla019503	Watermelon (Charleston Gray)	wcgwmB092
Cla019503	Cucurbita pepo (Zucchini)	cpewmB025
Cla019503	Cucurbita pepo (Zucchini)	cpewmB764
Cla019503	Bottle gourd (USVL1VR-Ls)	lsiwmB299