Csa1G073830 (gene) Cucumber (Chinese Long) v2

Overview
NameCsa1G073830
Typegene
OrganismCucumis. sativus (Cucumber (Chinese Long) v2)
DescriptionZinc finger protein LSD1; contains IPR005735 (Zinc finger, LSD1-type)
LocationChr1 : 7570432 .. 7573680 (-)
Genome Viewer
Gene Expression
   



Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTAAATGTTAAAACTAAAATGGCATAAGGGGAGAATTTGAGAAATTAGGGAGCCAATGCGCGGGACGCCGTTGTCCATGAAAACAGCAACACGATCGATTCTTAAGACCACAAATCCAGAGAATGGATGTTCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCCTCGCTGCCTCTACCACCGCCACCGCAACTTTCTTGTGAGTGCTTCCCAGGTTTATTTCAGATTTTGTGTTTTCGAATCTTCGTCTTGGTTTTGAGATTCGATGCATTTAATTTCTTTCTCATCGCTGTCTCTTTATACATTTGATTGAACTTCTGCTGCTTGACTTTAAAAACTTAAGCTGACATTTTTCTTTTGTAAATTTTTGGACAATATTTTCTTGTGTTCGTGTTTGTGAGCGAATTGATTGGGTGGTTTCTTCCCACTGCTTGTAACTCCCGAATATGTTAACCTAACTTAGTAGGAAAACTCTTTTTGAAATTTGTCCAATTCGAATCTATGCACTGTGCGTTATTAATCTGCTTAAACACAATTATAGTTCAGACATAGTTTCAGTTCAGGGAGTCGATGCTCATCCAACCAAAAGTGCAGAGAAGTTAAGAGGATTGTTGTTGAGTTTTTTGTATGATTGACCCAAATTTAGATCGGCTAATGTCAAATGATCCAGATTCTGAAAAACAATGAAAATTAACATTTTGCAGACACAGTACTCTACTTAACCTCTCCTTACTGCCCATTTTCTGTTGCGGGTTTGCAACTTTGCAAATTGATGAGACCTTGAACACGATTCCAATACACATCCCAATTTTTTCATAACAATTCAAACTTTTGCCTATTGTTTAAATTTTGTGATCCTATGAGTTTTCTAAAACCTGAAATCTTGTTCGGGGTCTCATCCATTCGCGATAGATGAAAACCTGCGATCGTGAATGGACAACAATTTAACTTTGGTTAGTGATTTTGTTGCGACTTAAGCAAAATGTTAGTTTTCATTGTTTATAGAATACATATCATTTGATATTAGTGCAACCAAATTTCAGTCAAAACCTCATTCCTGTTAGCATGTTATATTGCAAGTCCCAAATATTGTCATTATATGTACTTTACTTAAAATATCTCATTTGAAAACGTTTTGATCAGCAGCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGGTTCCTTCTCTTTCCTTCCTTCTTTTTAGTTTTTACTATCATTTTCTTTCTTAAAAGTTGTCTTGTTCATATGCCATTAGCCTTTTTCTAATTTTTCACCAATTCCTAGGAATGTCTATGTTGGTTCCAAAATGCCCTTGTACATCTGTTTTCTTTCGACTGCTTCCTATTTCATTAGCGGGTTGATTGTTTGGCTGTAGTTTTGAATATTTGTTTCACGTGGTAGTGCTGGCCTGCTGGGTGGTGCCTGTGGATTACTTTCTTTTGAGCTATATGTAATAATTGAGGAAACTAGTTATCGTGTTAATGATTTACGTTATGTGATTGTGCCTCCAGACATTAATGTTCTACATAAAACCAAGTATTGTAGGATCTACAATATTTTTCAGATGAGGGATAGATGAGTTTAGCCACCTTACAGACATTCAAATCTAAATAAATTTCCCTCATTCCTGCATTCAGGTTATCCTCACCCTTGTTGTCGGAGCCACCTATTATAATTGCTGAATTCCATCGTCCTAGCCTTGGGACAAGCCAACACTAGTCAAGTTTATAAATTAAATAATTGTTCATAGCCTGAAATCCAATTGATCACTACTTTGTCATTTTTTTTCATGATTTACTATTCAACATCGACTCAAGAAGTCTTCATCACAACTTGCTGTCAATGTCTTATGATTCAACTTTTCCTTTTCTTTTATTAATACCTTACATTCTCTTTCCAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTATGTCAATTTACATTCTGGCAAAGTTTTTTCTAGGAAAATATTTACAGTGGAGTCAAATCTTTCTGGTTGTCTCATTCATTCAATGTTGAAGCATGATTTGCTGGAAACGAGATTTTTCTTTAATCATTGGGTGATAAGTTTGTTCCTTGTCTAGAAGAAAATCTGATAAAGCATGGATGTGTTGAAACTAATCCTTCCAGTTCCCATCACTCAATGTGTTGGCAAGGACCATGGAGCAGAAGCCATTTTTCTACAGTCTCCTTGTTTGATGGAATTATATTGTAATGTGCAATATGGATCGAAGTAGATGCTTACCGAATTCATGCCAATTGATAGCATTAGAACTCTTTGAAAAAATATATATATATATAGTTTTAGTAGTACTTCGGTCCAAGTACTTTCAACATTGACTCACGTTTCTCTATTTTTAGAATACTCAAAATAGTCTTTATACTCTTAAATTTGCCTCAATTTGATTCTAATATTTTCAAAATGTCATTCCTTAAATACGTATATGTATATAAAAGCTCTTCATTTTCTAGGGAAACAAGGGTGATGATTTGGTATAATTTCAACTCTTTCTTGGCTTTGAAGCTTGATTGTTTATTAATTGTATGAATGAGAAACCCTGACTGACAGTAAATTTTAGCCTCTGACGGATTTAAATGGGTATGCAGGTTCATAATAGACGGCCACCGTGGTCTGTTCACCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAATAGAATTTGTTTTTCTGAGTTTCTTTTAGGAAAAGAGGTTTCATTTTCTGAGTTTTTCTTTTCCGTTGCAGCCTTAATCAGCAGGCAGAGAGAAGGAAAAGAGAACACTATCAATCATTACTACCTCTTTTGTTTCTTTATTATTAGCTATTGAGTTTATGTAAAGAAACTTAGGAACTCACCTTCCCAACTTCTAACGTTTTTTTTCTTTTTATCTTAAGTTTTTTTGACTTGTGACTTGACTTCTTGCTTTATGTTCATTTTTTTTAATGCTGCTGATTGGAGCCTTATTAGTTGCTGCCAATCTCTGAGGTGTACTTAATTGTAATTTGTAAATGATGAATCTTTTTTGTTGTCAAATTGTTGAGGTGTAATTTATTGA

mRNA sequence

ATGGATGTTCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCCTCGCTGCCTCTACCACCGCCACCGCAACTTTCTTCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTTCATAATAGACGGCCACCGTGGTCTGTTCACCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAATAG

Coding sequence (CDS)

ATGGATGTTCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCCTCGCTGCCTCTACCACCGCCACCGCAACTTTCTTCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTTCATAATAGACGGCCACCGTGGTCTGTTCACCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAATAG

Protein sequence

MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQGQAAPPTNFVQ*
Homology
[Close]
BLAST of Csa1G073830 vs. Swiss-Prot
Match: LOL2_ARATH (Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=1 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 4.1e-36
Identity = 73/130 (56.15%), Postives = 92/130 (70.77%), Query Frame = 1 

Query: 5   EIEKDEDDGPPPGWEPITPSLPLPPP---------PQLSS----DMAQMVCGTCRRLLKY 64
           E E++E++GPPPGWE    S  LPPP         P  ++    + AQMVCG+CRRLL Y
Sbjct: 17  EEEEEEEEGPPPGWE----SAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSY 76

Query: 65  LKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHN 122
           L+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N
Sbjct: 77  LRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENN 136

[Close]
BLAST of Csa1G073830 vs. Swiss-Prot
Match: LOL5_ORYSJ (Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.3e-29
Identity = 59/105 (56.19%), Postives = 72/105 (68.57%), Query Frame = 1 

Query: 16  PGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEV 75
           P  +   P +P PP P L+ ++ QMVCG+CR LL Y +GA YV C+CC T+N+VLEAHEV
Sbjct: 47  PCLQDSVPLVPPPPSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEV 106

Query: 76  GQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 121
           G+V CG CA LLMYP+GA +V+CS C  VTEIG  N R   S+ Q
Sbjct: 107 GKVHCGHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQ 151

[Close]
BLAST of Csa1G073830 vs. Swiss-Prot
Match: LOL1_ARATH (Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.3e-21
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 29  PPPQLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLM 88
           PPP   ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLM
Sbjct: 65  PPP--GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLM 124

Query: 89  YPYGASSVRCSSCTSVTEIG 109
           Y YGA SV+C+ C  VT +G
Sbjct: 125 YQYGARSVKCAVCNFVTSVG 142


HSP 2 Score: 38.9 bits (89), Expect = 5.1e-02
Identity = 16/31 (51.61%), Postives = 19/31 (61.29%), Query Frame = 1 

Query: 77  QVKCGSCAVLLMYPYGASSVRCSSCTSVTEI 108
           Q+ C  C  LLMYP GA+SV C+ C +VT +
Sbjct: 34  QLVCSGCRNLLMYPVGATSVCCAVCNAVTAV 64

[Close]
BLAST of Csa1G073830 vs. Swiss-Prot
Match: LSD1_ARATH (Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 6.4e-21
Identity = 50/114 (43.86%), Postives = 64/114 (56.14%), Query Frame = 1 

Query: 25  LPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEV 84
           +P PPPP    DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V
Sbjct: 39  VPPPPPPH---DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQV 98

Query: 85  GQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ--GQAAPPT 128
            Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P   ++  G A PP+
Sbjct: 99  AQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149


HSP 2 Score: 73.2 bits (178), Expect = 2.4e-12
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1 

Query: 39  QMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEA---HEVGQVKCGSCAVLLMYPYGASS 98
           Q+VC  CR LL Y +GA  V+C+ C+T+N V      H++  + CG C  +LMY  GASS
Sbjct: 9   QLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASS 68

Query: 99  VRCSSCTSVTEIGVHNRR 114
           VRCS C +   +  H+ +
Sbjct: 69  VRCSCCQTTNLVPAHSNQ 86

[Close]
BLAST of Csa1G073830 vs. Swiss-Prot
Match: LSD1_ORYSJ (Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 8.4e-21
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1 

Query: 31  PQLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYP 90
           P   ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY 
Sbjct: 96  PAPGTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQ 155

Query: 91  YGASSVRCSSCTSVTEIG 109
           YGA SV+C+ C  VT +G
Sbjct: 156 YGARSVKCAVCNFVTSVG 173


HSP 2 Score: 72.4 bits (176), Expect = 4.2e-12
Identity = 39/84 (46.43%), Postives = 47/84 (55.95%), Query Frame = 1 

Query: 22  TPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV-LEAHEVGQVKC 81
           TP +P  PP   +   +Q+VC  CR LL Y  GA  V C+ CSTV  V     E+ Q+ C
Sbjct: 51  TPPVPFTPP---NGAQSQLVCSGCRNLLMYPAGATSVCCAVCSTVTAVPAPGTEMAQLVC 110

Query: 82  GSCAVLLMYPYGASSVRCSSCTSV 105
           G C  LLMY  GA+SV+CS C +V
Sbjct: 111 GGCHTLLMYIRGATSVQCSCCHTV 131

[Close]
BLAST of Csa1G073830 vs. TrEMBL
Match: A0A0A0LXE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 285.0 bits (728), Expect = 4.6e-74
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 

Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120
           SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

Query: 121 GQAAPPTNFVQ 132
           GQAAPPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Csa1G073830 vs. TrEMBL
Match: V4W8M3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017149mg PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 6.6e-49
Identity = 92/125 (73.60%), Postives = 107/125 (85.60%), Query Frame = 1 

Query: 7   EKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTV 66
           E++E+ GPPPGW+PI P LP+P P    S+MAQMVCG+CR+LL Y +GAR+V+CSCC TV
Sbjct: 13  EENEEAGPPPGWQPIPPPLPVPSP----SEMAQMVCGSCRQLLAYPRGARHVKCSCCQTV 72

Query: 67  NFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQGQAAPP 126
           NFVLEAH+VGQVKC SCAVLLMYPYGASSVRCSSC  VTEIG HNRR PWSV QGQ+APP
Sbjct: 73  NFVLEAHQVGQVKCASCAVLLMYPYGASSVRCSSCRFVTEIGDHNRRAPWSVQQGQSAPP 132

Query: 127 TNFVQ 132
           +N V+
Sbjct: 133 SNTVR 133

[Close]
BLAST of Csa1G073830 vs. TrEMBL
Match: A0A072UPT8_MEDTR (LSD1-type zinc finger protein OS=Medicago truncatula GN=MTR_4g088850 PE=4 SV=1)

HSP 1 Score: 194.1 bits (492), Expect = 1.1e-46
Identity = 86/124 (69.35%), Postives = 98/124 (79.03%), Query Frame = 1 

Query: 4   HEIEKDEDDGPPPGWEPITP-SLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQCSC 63
           H++ K++DDGPPPGW+PI P   P PPPP L S  AQMVCG+CRRLL Y  GA++V+CSC
Sbjct: 6   HQVNKEDDDGPPPGWQPIPPPQRPRPPPPSLPSGFAQMVCGSCRRLLSYPPGAKHVKCSC 65

Query: 64  CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQGQ 123
           C TVN VLEA +VGQVKCGSCAVLLMYPYGA  VRCSSC  VTEIG  N+RPPWSV Q +
Sbjct: 66  CQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQVRCSSCRFVTEIGADNKRPPWSVQQSK 125

Query: 124 AAPP 127
             PP
Sbjct: 126 PTPP 129

[Close]
BLAST of Csa1G073830 vs. TrEMBL
Match: A0A061GEH3_THECC (Lsd one like 2 OS=Theobroma cacao GN=TCM_029880 PE=4 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 8.9e-46
Identity = 86/119 (72.27%), Postives = 99/119 (83.19%), Query Frame = 1 

Query: 8   KDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVN 67
           ++E++GPPPGW+    S+P PP P  SS+MAQMVCG+CR+LL Y +GAR  +CSCC TVN
Sbjct: 16  EEEEEGPPPGWQ----SIPPPPQPPPSSEMAQMVCGSCRQLLSYPRGARQAKCSCCETVN 75

Query: 68  FVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQGQAAPP 127
           FVLEAH+VG VKCGSCAVLLMYP+GASSVRCSSC  VTEIG HNRRPPWSV QGQ  PP
Sbjct: 76  FVLEAHQVGLVKCGSCAVLLMYPFGASSVRCSSCQFVTEIGAHNRRPPWSVQQGQPTPP 130

[Close]
BLAST of Csa1G073830 vs. TrEMBL
Match: B9H2V4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04310g PE=4 SV=2)

HSP 1 Score: 188.7 bits (478), Expect = 4.4e-45
Identity = 89/128 (69.53%), Postives = 100/128 (78.12%), Query Frame = 1 

Query: 2   DVHEIEKDEDDGPPPGWE--PITPSLPLPP-PPQLSSDMAQMVCGTCRRLLKYLKGARYV 61
           D+ E E++E++GPPPGW+  P  PSLP PP PP   S++ QMVCG+CRRLL Y KG R+V
Sbjct: 7   DMAEAEEEEEEGPPPGWQSFPPEPSLPPPPTPPPPPSELGQMVCGSCRRLLSYPKGVRHV 66

Query: 62  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 121
           QC CC  +NFVLEAHEVGQVKCGSC VLLMYPYGASSVRCSSC  VTEIG  NRRPPWSV
Sbjct: 67  QCQCCQMINFVLEAHEVGQVKCGSCDVLLMYPYGASSVRCSSCRFVTEIGEQNRRPPWSV 126

Query: 122 HQGQAAPP 127
            QG    P
Sbjct: 127 IQGYPPRP 134

[Close]
BLAST of Csa1G073830 vs. TAIR10
Match: AT4G21610.1 (AT4G21610.1 lsd one like 2)

HSP 1 Score: 152.1 bits (383), Expect = 2.3e-37
Identity = 73/130 (56.15%), Postives = 92/130 (70.77%), Query Frame = 1 

Query: 5   EIEKDEDDGPPPGWEPITPSLPLPPP---------PQLSS----DMAQMVCGTCRRLLKY 64
           E E++E++GPPPGWE    S  LPPP         P  ++    + AQMVCG+CRRLL Y
Sbjct: 17  EEEEEEEEGPPPGWE----SAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSY 76

Query: 65  LKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHN 122
           L+G+++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N
Sbjct: 77  LRGSKHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENN 136

[Close]
BLAST of Csa1G073830 vs. TAIR10
Match: AT1G32540.1 (AT1G32540.1 lsd one like 1)

HSP 1 Score: 104.0 bits (258), Expect = 7.3e-23
Identity = 46/80 (57.50%), Postives = 56/80 (70.00%), Query Frame = 1 

Query: 29  PPPQLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLM 88
           PPP   ++MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LLM
Sbjct: 98  PPP--GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLLM 157

Query: 89  YPYGASSVRCSSCTSVTEIG 109
           Y YGA SV+C+ C  VT +G
Sbjct: 158 YQYGARSVKCAVCNFVTSVG 175


HSP 2 Score: 40.0 bits (92), Expect = 1.3e-03
Identity = 18/44 (40.91%), Postives = 23/44 (52.27%), Query Frame = 1 

Query: 64  STVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEI 108
           + + FV       Q+ C  C  LLMYP GA+SV C+ C +VT +
Sbjct: 54  NNLRFVGSTSGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAV 97

[Close]
BLAST of Csa1G073830 vs. TAIR10
Match: AT4G20380.8 (AT4G20380.8 LSD1 zinc finger family protein)

HSP 1 Score: 93.6 bits (231), Expect = 9.8e-20
Identity = 53/140 (37.86%), Postives = 66/140 (47.14%), Query Frame = 1 

Query: 25  LPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE------------- 84
           +P PPPP    DMA ++CG CR +L Y +GA  V+CSCC T N V E             
Sbjct: 34  VPPPPPPH---DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPESSFTLLFDNILKV 93

Query: 85  ------------------AH----EVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGV 128
                             AH    +V Q+ CG C   LMYPYGASSV+C+ C  VT + +
Sbjct: 94  LKTKLLDGPGGLAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNM 153


HSP 2 Score: 70.1 bits (170), Expect = 1.2e-12
Identity = 32/66 (48.48%), Postives = 40/66 (60.61%), Query Frame = 1 

Query: 39  QMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEA---HEVGQVKCGSCAVLLMYPYGASS 98
           Q+VC  CR LL Y +GA  V+C+ C+T+N V      H++  + CG C  +LMY  GASS
Sbjct: 4   QLVCHGCRNLLMYPRGASNVRCALCNTINMVPPPPPPHDMAHIICGGCRTMLMYTRGASS 63

Query: 99  VRCSSC 102
           VRCS C
Sbjct: 64  VRCSCC 69


HSP 3 Score: 38.1 bits (87), Expect = 4.9e-03
Identity = 15/31 (48.39%), Postives = 19/31 (61.29%), Query Frame = 1 

Query: 77  QVKCGSCAVLLMYPYGASSVRCSSCTSVTEI 108
           Q+ C  C  LLMYP GAS+VRC+ C ++  +
Sbjct: 4   QLVCHGCRNLLMYPRGASNVRCALCNTINMV 34

[Close]
BLAST of Csa1G073830 vs. NCBI nr
Match: gi|449457731|ref|XP_004146601.1| (PREDICTED: protein LOL2 isoform X2 [Cucumis sativus])

HSP 1 Score: 285.0 bits (728), Expect = 6.5e-74
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1 

Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120
           SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ
Sbjct: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120

Query: 121 GQAAPPTNFVQ 132
           GQAAPPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Csa1G073830 vs. NCBI nr
Match: gi|778658738|ref|XP_011653178.1| (PREDICTED: protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 280.4 bits (716), Expect = 1.6e-72
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 1 

Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSS-DMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSS DMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120
           CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH
Sbjct: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120

Query: 121 QGQAAPPTNFVQ 132
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]
BLAST of Csa1G073830 vs. NCBI nr
Match: gi|659068064|ref|XP_008442544.1| (PREDICTED: protein LOL2 isoform X4 [Cucumis melo])

HSP 1 Score: 272.7 bits (696), Expect = 3.4e-70
Identity = 127/131 (96.95%), Postives = 127/131 (96.95%), Query Frame = 1 

Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS DMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 120
           S CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV Q
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQ 120

Query: 121 GQAAPPTNFVQ 132
           GQAAPPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Csa1G073830 vs. NCBI nr
Match: gi|659068062|ref|XP_008442535.1| (PREDICTED: protein LOL2 isoform X3 [Cucumis melo])

HSP 1 Score: 268.9 bits (686), Expect = 4.8e-69
Identity = 127/132 (96.21%), Postives = 128/132 (96.97%), Query Frame = 1 

Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLS-SDMAQMVCGTCRRLLKYLKGARYVQ 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS +DMAQMVCGTCRRLLKYLKGARYVQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVH 120
           CS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 
Sbjct: 61  CSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQ 120

Query: 121 QGQAAPPTNFVQ 132
           QGQAAPPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]
BLAST of Csa1G073830 vs. NCBI nr
Match: gi|659068060|ref|XP_008442526.1| (PREDICTED: protein LOL2 isoform X2 [Cucumis melo])

HSP 1 Score: 226.9 bits (577), Expect = 2.1e-56
Identity = 109/130 (83.85%), Postives = 112/130 (86.15%), Query Frame = 1 

Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPP PQLS DMAQMVCGTCRRLLKYLKGARYVQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHN--------- 118
           S CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG+ +         
Sbjct: 61  SWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGIRHGCVETNPSH 120

The following BLAST results are available for this feature:
BLAST of Csa1G073830 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LOL2_ARATH4.1e-3656.15Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=1 SV=1[more]
LOL5_ORYSJ1.3e-2956.19Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1[more]
LOL1_ARATH1.3e-2157.50Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1[more]
LSD1_ARATH6.4e-2143.86Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1[more]
LSD1_ORYSJ8.4e-2155.13Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1[more]
BLAST of Csa1G073830 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LXE3_CUCSA4.6e-74100.00Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073830 PE=4 SV=1[more]
V4W8M3_9ROSI6.6e-4973.60Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017149mg PE=4 SV=1[more]
A0A072UPT8_MEDTR1.1e-4669.35LSD1-type zinc finger protein OS=Medicago truncatula GN=MTR_4g088850 PE=4 SV=1[more]
A0A061GEH3_THECC8.9e-4672.27Lsd one like 2 OS=Theobroma cacao GN=TCM_029880 PE=4 SV=1[more]
B9H2V4_POPTR4.4e-4569.53Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04310g PE=4 SV=2[more]
BLAST of Csa1G073830 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21610.12.3e-3756.15 lsd one like 2[more]
AT1G32540.17.3e-2357.50 lsd one like 1[more]
AT4G20380.89.8e-2037.86 LSD1 zinc finger family protein[more]
BLAST of Csa1G073830 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457731|ref|XP_004146601.1|6.5e-74100.00PREDICTED: protein LOL2 isoform X2 [Cucumis sativus][more]
gi|778658738|ref|XP_011653178.1|1.6e-7299.24PREDICTED: protein LOL2 isoform X1 [Cucumis sativus][more]
gi|659068064|ref|XP_008442544.1|3.4e-7096.95PREDICTED: protein LOL2 isoform X4 [Cucumis melo][more]
gi|659068062|ref|XP_008442535.1|4.8e-6996.21PREDICTED: protein LOL2 isoform X3 [Cucumis melo][more]
gi|659068060|ref|XP_008442526.1|2.1e-5683.85PREDICTED: protein LOL2 isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005735Znf_LSD1
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
CU112251cucumber EST collection version 3.0transcribed_cluster
CU112535cucumber EST collection version 3.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Csa1G073830.1Csa1G073830.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
CU112535CU112535transcribed_cluster
CU112251CU112251transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005735Zinc finger, LSD1-typePFAMPF06943zf-LSD1coord: 80..104
score: 6.2E-11coord: 42..66
score: 1.
IPR005735Zinc finger, LSD1-typeTIGRFAMsTIGR01053TIGR01053coord: 39..69
score: 1.6E-13coord: 77..106
score: 3.3
NoneNo IPR availablePANTHERPTHR31747FAMILY NOT NAMEDcoord: 1..126
score: 3.1
NoneNo IPR availablePANTHERPTHR31747:SF4PROTEIN LOL2coord: 1..126
score: 3.1

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Csa1G073830Cla019503Watermelon (97103) v1cuwmB008
Csa1G073830MELO3C002600Melon (DHL92) v3.5.1cumeB027
Csa1G073830ClCG03G006020Watermelon (Charleston Gray)cuwcgB035
Csa1G073830Lsi02G007490Bottle gourd (USVL1VR-Ls)culsiB022
Csa1G073830MELO3C002600.2Melon (DHL92) v3.6.1cumedB022
Csa1G073830Cla97C03G057330Watermelon (97103) v2cuwmbB032
Csa1G073830Bhi08G001280Wax gourdcuwgoB038
Csa1G073830CSPI01G12090Wild cucumber (PI 183967)cpicuB000
Csa1G073830Cucsa.126650Cucumber (Gy14) v1cgycuB170
Csa1G073830CmaCh13G006470Cucurbita maxima (Rimu)cmacuB218
Csa1G073830CmoCh13G006650Cucurbita moschata (Rifu)cmocuB203
Csa1G073830Cp4.1LG20g04270Cucurbita pepo (Zucchini)cpecuB506
Csa1G073830CsGy1G012110Cucumber (Gy14) v2cgybcuB001
Csa1G073830Carg21497Silver-seed gourdcarcuB0963
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
Csa1G073830Watermelon (97103) v2cuwmbB000
Csa1G073830Watermelon (97103) v2cuwmbB023
Csa1G073830Wax gourdcuwgoB023
Csa1G073830Wax gourdcuwgoB073
Csa1G073830Cucumber (Chinese Long) v2cucuB026
Csa1G073830Cucumber (Chinese Long) v2cucuB035
Csa1G073830Cucumber (Chinese Long) v2cucuB045
Csa1G073830Cucumber (Gy14) v1cgycuB015
Csa1G073830Cucumber (Gy14) v1cgycuB161
Csa1G073830Cucurbita maxima (Rimu)cmacuB010
Csa1G073830Cucurbita maxima (Rimu)cmacuB391
Csa1G073830Cucurbita maxima (Rimu)cmacuB648
Csa1G073830Cucurbita maxima (Rimu)cmacuB848
Csa1G073830Cucurbita moschata (Rifu)cmocuB000
Csa1G073830Cucurbita moschata (Rifu)cmocuB380
Csa1G073830Cucurbita moschata (Rifu)cmocuB419
Csa1G073830Cucurbita moschata (Rifu)cmocuB636
Csa1G073830Cucurbita moschata (Rifu)cmocuB836
Csa1G073830Melon (DHL92) v3.5.1cumeB083
Csa1G073830Watermelon (Charleston Gray)cuwcgB009
Csa1G073830Watermelon (Charleston Gray)cuwcgB012
Csa1G073830Watermelon (97103) v1cuwmB043
Csa1G073830Watermelon (97103) v1cuwmB075
Csa1G073830Cucurbita pepo (Zucchini)cpecuB029
Csa1G073830Cucurbita pepo (Zucchini)cpecuB058
Csa1G073830Cucurbita pepo (Zucchini)cpecuB474
Csa1G073830Cucurbita pepo (Zucchini)cpecuB770
Csa1G073830Bottle gourd (USVL1VR-Ls)culsiB019
Csa1G073830Bottle gourd (USVL1VR-Ls)culsiB050
Csa1G073830Cucumber (Gy14) v2cgybcuB158
Csa1G073830Cucumber (Gy14) v2cgybcuB239
Csa1G073830Melon (DHL92) v3.6.1cumedB077
Csa1G073830Silver-seed gourdcarcuB0163
Csa1G073830Silver-seed gourdcarcuB0186
Csa1G073830Silver-seed gourdcarcuB0575
Csa1G073830Silver-seed gourdcarcuB0661