CSPI01G12090 (gene) Wild cucumber (PI 183967) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CSPI01G12090
Type	gene
Organism	Cucumis sativus (Wild cucumber (PI 183967))
Description	LSD1-type zinc finger protein
Location	Chr1 : 7617566 .. 7620827 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AATTTTTAAGATTTATATTAAATGTTAAAACTAAAATGGCATAAGGGGAGAATTTGAGAAGTTAGGGAGCCAATGCGCGGGACGCCGTTGTCCATGAAAACAGCAACACGATCGATTCTTAAGACCACAAATCCAGAGAATGGATGTTCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCCTCGCTGCCTCTACCACCGCCGCCACCGCAACTTTCTTGTGAGTGCTTCCCAGGTTTATTTCAGATTTTGTGTTTTCGAATCTTCGTCTTGGTTTTGAGATTCGATGCATTTAATTTCTTTCTCATCGCTGTCTCTTTATACATTTGATTGAACTTCTGCTGCTTGACTTTAAAAACTTAAGCTGACATTTTTCTTTTGTAAATTTTTGGACAATATTTTCTTGTGTTCGTGTTTGTGAGCGAATTGATTGGGTGGTTTCTTCCCACTGCTTGTAACTCCCGAATATGTTAACCTAACTTAGTAGGATAACTCTTTTTGAAATTTGTCCAATTCGAATCTATGCACTGTGCGTTATTAATCTGCTTAAACACAATTATAGTTCAGACATAGTTTCAGTTCAGGGAGTCGATGCTCATCCAACCAAAAGTGCAGAGAAGTTAAGAGGATTGTTGTTGAGTTTTTTGTATGATTGACCCAAATTTAGATCGGCTAATGTCAAATGATCCAGATTCTGATAAACAATGAAAATTAACATTTTGCAGACACAGTACTCTACTTAACCTCTCCTTACTGCCCATTTTCTGTTGCGGGTTTGCAACTTTGCAAATTGATGAGACCTTGAACACGATTCCAATACACATCCCAATTTTTTCATAACAATTCAAACTTTTGCCTATTGTTTAAATTTTGTGATCCTATGAGTTTTCTAAAACCTGAAATCTTGTTCGGGGTCTCATCCATTCGCGATAGATGAAAACCTGCGATCGTGAATGGACAACAATTTAACTTTGGTTAGTGATTTTGTTGCGACTTAAGCAAAATGTTAGTTTTCATTGTTTATAGAATACATATCATTTGATATTAGTGCAACCAAATTTCAGTCAAAACCTCATTCCTGTTAGCATGTTATATTGCAAGTCCCAAATATTGTCTCCCAAATATTGTCATTGTATGTACTTAAAATATCTCATTTGAAAACGTTTTGATCAGCAGCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGGTTCCTTCTCTTTCCTTCCTTCTTTTTAGTTTTTACTATCATTTTCTTTCTTAAAAGTTGTCTTGTTCATATGCCATTAGCCTTTTGCTAATATTTCACCAATTCCTAGGAATGTCTATGTTGGTTCCAAAATGCCCTTGTACATCTGTTTTCTTTCGACTGCTTCCTATTTCATTAGCGGGTTGATTGTTTGGCTGTAGTTTTGAATATTTGTTTCACGTGGTAGTGCTGGCCTGCTGGGTGGTGCCTGTGGATTACTTTCTTTTGAGCTATATGTAATAATTGAGGAAACTAGTTATCGTGTTAATGATTTACGTTATGTGATTGTGCCTCCAGACATTAATGTTCTACATAAAACCAAGTATTGTAGGATCTACAATATTTTTCAGATGAGGCATAGATGAGTTTAGCCACCTTACAGACATTCAAATCTAAATAAATTTCCCTCATTCCTTCATTCAAGTTATCCTCACCCTTGTTGAATTCCATCGTCCTAGCCTTGGGACAAGCCAACACTAGTCAAGTTTATAAATTAAATAATTGTTCATAGCCTGAAATCCAATTGATCACTACTTTGTCATTTTTTTTCATGATTTACTATTCAACATCGACTCAAGAAGTCTTCATCACAACTTGCTGTCAATGTCTTATGATTCAACTTTTCCTTTTCTTTTATTAATACCTTACATTCTCTTTCCAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTATGTCAATTTACATTCTGGCAAAGTTTTTTCTAGGAAAATATTTACAGTGGAGTCAAATCTTTCTGGTTGTCTCATTCATTCAATGTTGAAGCATGATTTGCTGGAAACGAGATTTTTCTTTAATCATTGGGTGATAAGTTTGTTCCTTGTCTAGAAGAAAATCTGATAAAGCATGGATGTGTTGAAACTAATCCTTCCAGTTCCCATCACTCAATGTGTTGGCAAGGACCATGGAGCAGAAGCCATTTTTCTACAGTCTCCTTGTTTGATGGAATTATATTGTAATGTGCAATATGGATCGAAGGAGATGCTTACTGAATTCATGCCAATTGATAGCATTAGAACTCTTTGAAAATATATATATATATATATATATAGTTTTAATATTACTTCGGTCCAAGTACTTTCAACATTGACTCACGTTTCTCTATTTTTAGAATACTCAAAATAGTCTTTATACTCTTAAATTTGCCTCAATTTGATTCTAATATTTTCAAAATGTCATTCCTTAAATACGTATATGTATATAAAAGCTCTTCATTTTCTAGGGAAACAAGGGTGATGATTTGGGGTAATTTCAACTCTTTCTTGGCTTTGAAGCTTGATTGTTTATTAATTGTATGAATGAGAAACCCTGACTGACAGTAAATTTTAGCCTCTGACGGATTTAAATGGGTATGCAGGTTCATAATAGACGGCCACCGTGGTCTGTTCACCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAATAGAATTTGTTTTTCTGAGTTTCTTTTAGGAAAAGAGGTTTCATTTTCTGAGTTTTTCTTTTCCGTTGCAGCCTTAATCAGCAGGCAGAGAGAAGGAAAAGAGAACACTATCAATCATTACTACCTCTTTTGTTTCTTTATTATTAGCTATTGAGTTTATGTAAAGAAACTTAGGAACTCACCTTCCCAACTTCTAACGTTTTTTTTCTTTTTATCTTAAGTTTTTTTGACTTGTGACTTGACTTCTTGCTTTATGTTCATTTTTTTTTACTGCTGCTGATTGGAGTCTTATTAGTTGCTGCCAATCTCTGAGGTGTACATAATTGTAATTTGTAAATGATATGAATCTTTTTTGTTGTCAAATTGTTGAGGTGTAATTTATTGA

mRNA sequence

ATGGATGTTCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCCTCGCTGCCTCTACCACCGCCGCCACCGCAACTTTCTTCAGCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTTCATAATAGACGGCCACCGTGGTCTGTTCACCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAATAG

Coding sequence (CDS)

ATGGATGTTCATGAAATCGAGAAAGACGAAGATGACGGCCCTCCTCCTGGATGGGAACCCATCACTCCCTCGCTGCCTCTACCACCGCCGCCACCGCAACTTTCTTCAGCTGACATGGCACAAATGGTCTGTGGTACATGCCGTCGCCTGCTTAAGTATTTAAAGGGAGCCAGATATGTTCAATGCTCTTGCTGTTCAACAGTTAACTTTGTGTTAGAAGCTCACGAGGTTGGACAAGTTAAATGCGGTTCTTGTGCAGTGTTGCTTATGTACCCATATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACAGAAATTGGGGTTCATAATAGACGGCCACCGTGGTCTGTTCACCAGGGACAAGCAGCCCCTCCTACCAACTTTGTCCAATAG

Homology

[Close]

BLAST of CSPI01G12090 vs. Swiss-Prot
Match: LOL2_ARATH (Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=1 SV=1)

HSP 1 Score: 148.3 bits (373), Expect = 6.1e-35
Identity = 70/126 (55.56%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 5   EIEKDEDDGPPPGWEP-------ITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGA 64
           E E++E++GPPPGWE        +T +  + P P  +   + AQMVCG+CRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP 124
           ++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of CSPI01G12090 vs. Swiss-Prot
Match: LOL5_ORYSJ (Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 1.2e-27
Identity = 59/100 (59.00%), Postives = 73/100 (73.00%), Query Frame = 1


Query: 24  SLPLPPPPPQ-LSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKC 83
           S+PL PPPP    + ++ QMVCG+CR LL Y +GA YV C+CC T+N+VLEAHEVG+V C
Sbjct: 52  SVPLVPPPPSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEAHEVGKVHC 111

Query: 84  GSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ 123
           G CA LLMYP+GA +V+CS C  VTEIG  N R   S+ Q
Sbjct: 112 GHCATLLMYPFGAPAVKCSLCLFVTEIGERNVRRRLSIEQ 151

[Close]

BLAST of CSPI01G12090 vs. Swiss-Prot
Match: LOL1_ARATH (Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.5e-20
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 30  PPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLL 89
           PPP     +MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LL
Sbjct: 65  PPP---GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 124

Query: 90  MYPYGASSVRCSSCTSVTEIG 111
           MY YGA SV+C+ C  VT +G
Sbjct: 125 MYQYGARSVKCAVCNFVTSVG 142

[Close]

BLAST of CSPI01G12090 vs. Swiss-Prot
Match: LSD1_ORYSJ (Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 5.5e-20
Identity = 42/73 (57.53%), Postives = 54/73 (73.97%), Query Frame = 1


Query: 38  DMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASS 97
           +MAQ+VCG C  LL Y++GA  VQCSCC TVN  +EA++V  V CG+C +LLMY YGA S
Sbjct: 101 EMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLAMEANQVAHVNCGNCRMLLMYQYGARS 160

Query: 98  VRCSSCTSVTEIG 111
           V+C+ C  VT +G
Sbjct: 161 VKCAVCNFVTSVG 173

[Close]

BLAST of CSPI01G12090 vs. Swiss-Prot
Match: LSD1_ARATH (Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 7.2e-20
Identity = 50/113 (44.25%), Postives = 65/113 (57.52%), Query Frame = 1


Query: 28  PPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFV---------LEAHEVG 87
           PPPPP     DMA ++CG CR +L Y +GA  V+CSCC T N V           + +V 
Sbjct: 41  PPPPPH----DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPAHSNQVAHAPSSQVA 100

Query: 88  QVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQ--GQAAPPT 130
           Q+ CG C   LMYPYGASSV+C+ C  VT + + N R P   ++  G A PP+
Sbjct: 101 QINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMSNGRVPLPTNRPNGTACPPS 149

[Close]

BLAST of CSPI01G12090 vs. TrEMBL
Match: A0A0A0LXE3_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 270.0 bits (689), Expect = 1.5e-69
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYV 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPPP QLSS DMAQMVCGTCRRLLKYLKGARYV
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPP-QLSS-DMAQMVCGTCRRLLKYLKGARYV 60

Query: 61  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 120
           QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV
Sbjct: 61  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 120

Query: 121 HQGQAAPPTNFVQ 134
           HQGQAAPPTNFVQ
Sbjct: 121 HQGQAAPPTNFVQ 131

[Close]

BLAST of CSPI01G12090 vs. TrEMBL
Match: V4W8M3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017149mg PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 1.4e-46
Identity = 91/127 (71.65%), Postives = 107/127 (84.25%), Query Frame = 1


Query: 7   EKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCS 66
           E++E+ GPPPGW+PI P LP+P P      ++MAQMVCG+CR+LL Y +GAR+V+CSCC 
Sbjct: 13  EENEEAGPPPGWQPIPPPLPVPSP------SEMAQMVCGSCRQLLAYPRGARHVKCSCCQ 72

Query: 67  TVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQGQAA 126
           TVNFVLEAH+VGQVKC SCAVLLMYPYGASSVRCSSC  VTEIG HNRR PWSV QGQ+A
Sbjct: 73  TVNFVLEAHQVGQVKCASCAVLLMYPYGASSVRCSSCRFVTEIGDHNRRAPWSVQQGQSA 132

Query: 127 PPTNFVQ 134
           PP+N V+
Sbjct: 133 PPSNTVR 133

[Close]

BLAST of CSPI01G12090 vs. TrEMBL
Match: A0A061GEH3_THECC (Lsd one like 2 OS=Theobroma cacao GN=TCM_029880 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.5e-43
Identity = 85/121 (70.25%), Postives = 98/121 (80.99%), Query Frame = 1


Query: 8   KDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCST 67
           ++E++GPPPGW+ I      PPPP    S++MAQMVCG+CR+LL Y +GAR  +CSCC T
Sbjct: 16  EEEEEGPPPGWQSI------PPPPQPPPSSEMAQMVCGSCRQLLSYPRGARQAKCSCCET 75

Query: 68  VNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQGQAAP 127
           VNFVLEAH+VG VKCGSCAVLLMYP+GASSVRCSSC  VTEIG HNRRPPWSV QGQ  P
Sbjct: 76  VNFVLEAHQVGLVKCGSCAVLLMYPFGASSVRCSSCQFVTEIGAHNRRPPWSVQQGQPTP 130

Query: 128 P 129
           P
Sbjct: 136 P 130

[Close]

BLAST of CSPI01G12090 vs. TrEMBL
Match: A0A072UPT8_MEDTR (LSD1-type zinc finger protein OS=Medicago truncatula GN=MTR_4g088850 PE=4 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.5e-43
Identity = 85/125 (68.00%), Postives = 97/125 (77.60%), Query Frame = 1


Query: 4   HEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCS 63
           H++ K++DDGPPPGW+PI P     PPPP L S   AQMVCG+CRRLL Y  GA++V+CS
Sbjct: 6   HQVNKEDDDGPPPGWQPIPPPQRPRPPPPSLPSG-FAQMVCGSCRRLLSYPPGAKHVKCS 65

Query: 64  CCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVHQG 123
           CC TVN VLEA +VGQVKCGSCAVLLMYPYGA  VRCSSC  VTEIG  N+RPPWSV Q 
Sbjct: 66  CCQTVNIVLEADQVGQVKCGSCAVLLMYPYGAPQVRCSSCRFVTEIGADNKRPPWSVQQS 125

Query: 124 QAAPP 129
           +  PP
Sbjct: 126 KPTPP 129

[Close]

BLAST of CSPI01G12090 vs. TrEMBL
Match: B9H2V4_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04310g PE=4 SV=2)

HSP 1 Score: 180.6 bits (457), Expect = 1.2e-42
Identity = 86/128 (67.19%), Postives = 98/128 (76.56%), Query Frame = 1


Query: 2   DVHEIEKDEDDGPPPGWEPITPSLPLPPPP-PQLSSADMAQMVCGTCRRLLKYLKGARYV 61
           D+ E E++E++GPPPGW+   P   LPPPP P    +++ QMVCG+CRRLL Y KG R+V
Sbjct: 7   DMAEAEEEEEEGPPPGWQSFPPEPSLPPPPTPPPPPSELGQMVCGSCRRLLSYPKGVRHV 66

Query: 62  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 121
           QC CC  +NFVLEAHEVGQVKCGSC VLLMYPYGASSVRCSSC  VTEIG  NRRPPWSV
Sbjct: 67  QCQCCQMINFVLEAHEVGQVKCGSCDVLLMYPYGASSVRCSSCRFVTEIGEQNRRPPWSV 126

Query: 122 HQGQAAPP 129
            QG    P
Sbjct: 127 IQGYPPRP 134

[Close]

BLAST of CSPI01G12090 vs. TAIR10
Match: AT4G21610.1 (AT4G21610.1 lsd one like 2)

HSP 1 Score: 148.3 bits (373), Expect = 3.4e-36
Identity = 70/126 (55.56%), Postives = 93/126 (73.81%), Query Frame = 1


Query: 5   EIEKDEDDGPPPGWEP-------ITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGA 64
           E E++E++GPPPGWE        +T +  + P P  +   + AQMVCG+CRRLL YL+G+
Sbjct: 17  EEEEEEEEGPPPGWESAVLPPPIVTITAAVNPNPTTVEIPEKAQMVCGSCRRLLSYLRGS 76

Query: 65  RYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPP 124
           ++V+CS C TVN VLEA++VGQV C +C +LLMYPYGA +VRCSSC SVT+I  +N+RPP
Sbjct: 77  KHVKCSSCQTVNLVLEANQVGQVNCNNCKLLLMYPYGAPAVRCSSCNSVTDISENNKRPP 136

[Close]

BLAST of CSPI01G12090 vs. TAIR10
Match: AT1G32540.1 (AT1G32540.1 lsd one like 1)

HSP 1 Score: 100.5 bits (249), Expect = 8.2e-22
Identity = 46/81 (56.79%), Postives = 57/81 (70.37%), Query Frame = 1


Query: 30  PPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLEAHEVGQVKCGSCAVLL 89
           PPP     +MAQ+VCG C  LL Y++GA  VQCSCC TVN  LEA++V  V CG+C +LL
Sbjct: 98  PPP---GTEMAQLVCGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCMMLL 157

Query: 90  MYPYGASSVRCSSCTSVTEIG 111
           MY YGA SV+C+ C  VT +G
Sbjct: 158 MYQYGARSVKCAVCNFVTSVG 175

[Close]

BLAST of CSPI01G12090 vs. TAIR10
Match: AT4G20380.8 (AT4G20380.8 LSD1 zinc finger family protein)

HSP 1 Score: 90.1 bits (222), Expect = 1.1e-18
Identity = 53/139 (38.13%), Postives = 67/139 (48.20%), Query Frame = 1


Query: 28  PPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQCSCCSTVNFVLE-------------- 87
           PPPPP     DMA ++CG CR +L Y +GA  V+CSCC T N V E              
Sbjct: 36  PPPPPH----DMAHIICGGCRTMLMYTRGASSVRCSCCQTTNLVPESSFTLLFDNILKVL 95

Query: 88  -----------------AH----EVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVH 130
                            AH    +V Q+ CG C   LMYPYGASSV+C+ C  VT + + 
Sbjct: 96  KTKLLDGPGGLAHSNQVAHAPSSQVAQINCGHCRTTLMYPYGASSVKCAVCQFVTNVNMS 155

[Close]

BLAST of CSPI01G12090 vs. NCBI nr
Match: gi|778658738|ref|XP_011653178.1| (PREDICTED: protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 276.2 bits (705), Expect = 3.1e-71
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 1


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYV 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLP PPPQLSSADMAQMVCGTCRRLLKYLKGARYV
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLP-PPPQLSSADMAQMVCGTCRRLLKYLKGARYV 60

Query: 61  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 120
           QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV
Sbjct: 61  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 120

Query: 121 HQGQAAPPTNFVQ 134
           HQGQAAPPTNFVQ
Sbjct: 121 HQGQAAPPTNFVQ 132

[Close]

BLAST of CSPI01G12090 vs. NCBI nr
Match: gi|449457731|ref|XP_004146601.1| (PREDICTED: protein LOL2 isoform X2 [Cucumis sativus])

HSP 1 Score: 270.0 bits (689), Expect = 2.2e-69
Identity = 131/133 (98.50%), Postives = 131/133 (98.50%), Query Frame = 1


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYV 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPPPP QLSS DMAQMVCGTCRRLLKYLKGARYV
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPP-QLSS-DMAQMVCGTCRRLLKYLKGARYV 60

Query: 61  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 120
           QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV
Sbjct: 61  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 120

Query: 121 HQGQAAPPTNFVQ 134
           HQGQAAPPTNFVQ
Sbjct: 121 HQGQAAPPTNFVQ 131

[Close]

BLAST of CSPI01G12090 vs. NCBI nr
Match: gi|659068062|ref|XP_008442535.1| (PREDICTED: protein LOL2 isoform X3 [Cucumis melo])

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-67
Identity = 128/133 (96.24%), Postives = 128/133 (96.24%), Query Frame = 1


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYV 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPP  PQLS ADMAQMVCGTCRRLLKYLKGARYV
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQ-PQLSPADMAQMVCGTCRRLLKYLKGARYV 60

Query: 61  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 120
           QCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV
Sbjct: 61  QCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 120

Query: 121 HQGQAAPPTNFVQ 134
            QGQAAPPTNFVQ
Sbjct: 121 QQGQAAPPTNFVQ 132

[Close]

BLAST of CSPI01G12090 vs. NCBI nr
Match: gi|659068064|ref|XP_008442544.1| (PREDICTED: protein LOL2 isoform X4 [Cucumis melo])

HSP 1 Score: 257.7 bits (657), Expect = 1.1e-65
Identity = 127/133 (95.49%), Postives = 127/133 (95.49%), Query Frame = 1


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYV 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPP P QLS  DMAQMVCGTCRRLLKYLKGARYV
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQP-QLSP-DMAQMVCGTCRRLLKYLKGARYV 60

Query: 61  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 120
           QCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV
Sbjct: 61  QCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSV 120

Query: 121 HQGQAAPPTNFVQ 134
            QGQAAPPTNFVQ
Sbjct: 121 QQGQAAPPTNFVQ 131

[Close]

BLAST of CSPI01G12090 vs. NCBI nr
Match: gi|659068058|ref|XP_008442518.1| (PREDICTED: protein LOL2 isoform X1 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 2.2e-53
Identity = 110/132 (83.33%), Postives = 113/132 (85.61%), Query Frame = 1


Query: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPPQLSSADMAQMVCGTCRRLLKYLKGARYV 60
           MDVHEIEKDEDDGPPPGWEPITPSLPLPP  PQLS ADMAQMVCGTCRRLLKYLKGARYV
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQ-PQLSPADMAQMVCGTCRRLLKYLKGARYV 60

Query: 61  QCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHN------- 120
           QCS CSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIG+ +       
Sbjct: 61  QCSWCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGIRHGCVETNP 120

The following BLAST results are available for this feature:

BLAST of CSPI01G12090 vs. Swiss-Prot


Match Name	E-value	Identity	Description
LOL2_ARATH	6.1e-35	55.56	Protein LOL2 OS=Arabidopsis thaliana GN=LOL2 PE=1 SV=1	[more]
LOL5_ORYSJ	1.2e-27	59.00	Protein LOL5 OS=Oryza sativa subsp. japonica GN=LOL5 PE=2 SV=1	[more]
LOL1_ARATH	1.5e-20	56.79	Protein LOL1 OS=Arabidopsis thaliana GN=LOL1 PE=2 SV=1	[more]
LSD1_ORYSJ	5.5e-20	57.53	Protein LSD1 OS=Oryza sativa subsp. japonica GN=LSD1 PE=2 SV=1	[more]
LSD1_ARATH	7.2e-20	44.25	Protein LSD1 OS=Arabidopsis thaliana GN=LSD1 PE=1 SV=1	[more]

BLAST of CSPI01G12090 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LXE3_CUCSA	1.5e-69	98.50	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G073830 PE=4 SV=1	[more]
V4W8M3_9ROSI	1.4e-46	71.65	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017149mg PE=4 SV=1	[more]
A0A061GEH3_THECC	5.5e-43	70.25	Lsd one like 2 OS=Theobroma cacao GN=TCM_029880 PE=4 SV=1	[more]
A0A072UPT8_MEDTR	5.5e-43	68.00	LSD1-type zinc finger protein OS=Medicago truncatula GN=MTR_4g088850 PE=4 SV=1	[more]
B9H2V4_POPTR	1.2e-42	67.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s04310g PE=4 SV=2	[more]

BLAST of CSPI01G12090 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G21610.1	3.4e-36	55.56	lsd one like 2	[more]
AT1G32540.1	8.2e-22	56.79	lsd one like 1	[more]
AT4G20380.8	1.1e-18	38.13	LSD1 zinc finger family protein	[more]

BLAST of CSPI01G12090 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778658738\|ref\|XP_011653178.1\|	3.1e-71	99.25	PREDICTED: protein LOL2 isoform X1 [Cucumis sativus]	[more]
gi\|449457731\|ref\|XP_004146601.1\|	2.2e-69	98.50	PREDICTED: protein LOL2 isoform X2 [Cucumis sativus]	[more]
gi\|659068062\|ref\|XP_008442535.1\|	1.6e-67	96.24	PREDICTED: protein LOL2 isoform X3 [Cucumis melo]	[more]
gi\|659068064\|ref\|XP_008442544.1\|	1.1e-65	95.49	PREDICTED: protein LOL2 isoform X4 [Cucumis melo]	[more]
gi\|659068058\|ref\|XP_008442518.1\|	2.2e-53	83.33	PREDICTED: protein LOL2 isoform X1 [Cucumis melo]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005735	Znf_LSD1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CSPI01G12090.1	CSPI01G12090.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (PI183967)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005735	Zinc finger, LSD1-type	PFAM	PF06943	zf-LSD1	coord: 44..68 score: 1.0E-7coord: 82..106 score: 6.3
IPR005735	Zinc finger, LSD1-type	TIGRFAMs	TIGR01053	TIGR01053	coord: 41..71 score: 1.6E-13coord: 79..108 score: 3.4
None	No IPR available	PANTHER	PTHR31747	FAMILY NOT NAMED	coord: 1..128 score: 3.2
None	No IPR available	PANTHER	PTHR31747:SF4	PROTEIN LOL2	coord: 1..128 score: 3.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CSPI01G12090	Cla019503	Watermelon (97103) v1	cpiwmB010
CSPI01G12090	Csa1G073830	Cucumber (Chinese Long) v2	cpicuB000
CSPI01G12090	MELO3C002600	Melon (DHL92) v3.5.1	cpimeB024
CSPI01G12090	ClCG03G006020	Watermelon (Charleston Gray)	cpiwcgB038
CSPI01G12090	Lsi02G007490	Bottle gourd (USVL1VR-Ls)	cpilsiB021
CSPI01G12090	MELO3C002600.2	Melon (DHL92) v3.6.1	cpimedB023
CSPI01G12090	CsaV3_1G012280	Cucumber (Chinese Long) v3	cpicucB001
CSPI01G12090	Cla97C03G057330	Watermelon (97103) v2	cpiwmbB032
CSPI01G12090	Bhi08G001280	Wax gourd	cpiwgoB038
CSPI01G12090	Cucsa.126650	Cucumber (Gy14) v1	cgycpiB172
CSPI01G12090	CmaCh13G006470	Cucurbita maxima (Rimu)	cmacpiB219
CSPI01G12090	CmoCh13G006650	Cucurbita moschata (Rifu)	cmocpiB205
CSPI01G12090	Cp4.1LG20g04270	Cucurbita pepo (Zucchini)	cpecpiB506
CSPI01G12090	CsGy1G012110	Cucumber (Gy14) v2	cgybcpiB001
CSPI01G12090	Carg21497	Silver-seed gourd	carcpiB0986

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CSPI01G12090	Silver-seed gourd	carcpiB0169
CSPI01G12090	Silver-seed gourd	carcpiB0193
CSPI01G12090	Silver-seed gourd	carcpiB0581
CSPI01G12090	Silver-seed gourd	carcpiB0670
CSPI01G12090	Cucumber (Chinese Long) v3	cpicucB039
CSPI01G12090	Cucumber (Chinese Long) v3	cpicucB051
CSPI01G12090	Watermelon (97103) v2	cpiwmbB001
CSPI01G12090	Watermelon (97103) v2	cpiwmbB023
CSPI01G12090	Wax gourd	cpiwgoB023
CSPI01G12090	Wax gourd	cpiwgoB075
CSPI01G12090	Wild cucumber (PI 183967)	cpicpiB026
CSPI01G12090	Wild cucumber (PI 183967)	cpicpiB038
CSPI01G12090	Cucurbita pepo (Zucchini)	cpecpiB025
CSPI01G12090	Wild cucumber (PI 183967)	cpicpiB051
CSPI01G12090	Cucumber (Gy14) v1	cgycpiB016
CSPI01G12090	Cucumber (Gy14) v1	cgycpiB162
CSPI01G12090	Cucurbita maxima (Rimu)	cmacpiB009
CSPI01G12090	Cucurbita maxima (Rimu)	cmacpiB395
CSPI01G12090	Cucurbita maxima (Rimu)	cmacpiB654
CSPI01G12090	Cucurbita maxima (Rimu)	cmacpiB865
CSPI01G12090	Cucurbita moschata (Rifu)	cmocpiB000
CSPI01G12090	Cucurbita moschata (Rifu)	cmocpiB383
CSPI01G12090	Cucurbita moschata (Rifu)	cmocpiB423
CSPI01G12090	Cucurbita moschata (Rifu)	cmocpiB647
CSPI01G12090	Cucurbita moschata (Rifu)	cmocpiB846
CSPI01G12090	Cucumber (Chinese Long) v2	cpicuB034
CSPI01G12090	Cucumber (Chinese Long) v2	cpicuB044
CSPI01G12090	Cucumber (Chinese Long) v2	cpicuB051
CSPI01G12090	Melon (DHL92) v3.5.1	cpimeB086
CSPI01G12090	Watermelon (Charleston Gray)	cpiwcgB011
CSPI01G12090	Watermelon (Charleston Gray)	cpiwcgB016
CSPI01G12090	Watermelon (97103) v1	cpiwmB043
CSPI01G12090	Watermelon (97103) v1	cpiwmB082
CSPI01G12090	Cucurbita pepo (Zucchini)	cpecpiB052
CSPI01G12090	Cucurbita pepo (Zucchini)	cpecpiB475
CSPI01G12090	Cucurbita pepo (Zucchini)	cpecpiB771
CSPI01G12090	Bottle gourd (USVL1VR-Ls)	cpilsiB018
CSPI01G12090	Bottle gourd (USVL1VR-Ls)	cpilsiB051
CSPI01G12090	Melon (DHL92) v3.6.1	cpimedB076
CSPI01G12090	Cucumber (Gy14) v2	cgybcpiB161
CSPI01G12090	Cucumber (Gy14) v2	cgybcpiB248