Cla97C03G057330.1 (mRNA) Watermelon (97103) v2

Overview
NameCla97C03G057330.1
TypemRNA
OrganismCitrullus lanatus (Watermelon (97103) v2)
Descriptionprotein LSD1-like isoform X1
LocationCla97Chr03 : 6018647 .. 6020822 (-)
Sequence length393
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTGTCAGTGCTTCCGAGGGTTATTTCAGATTTTGTGTTTGCGAATCTTCGTCTTGGTTTTGAGATTCGAAGCATTTAATTATTTCCCATCTCTGGCCCTTTATACATCTGATTGAACTTCTGTTGATTGAATTCAAAACTTAAGCTGACATTTTTCTTTTGTGAGTGAATCAATTTGGTGGTTGCTTCCCACTTCTTATAACGGTGAATATGTTAACCTAAGTTAGCAGGAAAACTCTTTCTAAAATTAATCCAATTCACATCTGTGCAGTGTGTGTTATTAATCCGCATACACAATTGTATTCACACGTAGTTTCAGTTCATGGAATCGATTTTCATCCAACAAAAGCGCATAGAAGTTGGGGCATTCTTGCTAGCATGTTTAATTGCAAGTCCCAAATATTGTAATTGTTCTCACTGGAAACGTTTTGATCTGCAGCCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGGTTCCTTCTCTTTTCCTTCCTTCTTTTTAGGTTTTTCTATTATTTTCTTCCTCAAAAGTTGTCTTGTTCATATGCTGTTGGGTTTTTGCTAATTTTTAAGAGCCCCAATTCCCATGTATGTTGGTTTCCAAATGCCATTAGCACTTCCAAACTCTATGCTCTTCAATTCTGTTTTCTTTCTACTGCGTCCTCTTTCATTAGAGGGTCAAGTGTTCGGTTTTAACTCTGAATATCTTTTTCTTGTGCTAGTTCTGGGTGGTGCCTGTGTACCCCATTATGTGATTGTGCCTCCAAACATTAATGCTCTACATAAAACCAAATATTGTAGGATTTATGATACTTTTCAGATGGGTCATAGATGAGTTTAGGTGGTCTTACAGACATTGAAATCTGAATCATTTTCCCCCTTTCCTGCATTCAAAGTATCCACATCTTAGCCACCAAGTACAATTGTTGAGTTCGATCAACTCATCCTTAGGACGAGCCAACACTAGACCAGTTTATAAATTAAATAACTGTATACAGCCTGAAATCCAAATGATCATTACTTTTTCCATTTCCATTTCTTTTCAATACATGCTTGTATCTGGATGTTAAAAGCAAATTTTGGCTTTCCAGAAGGGTTTCTACTATGTGCGTGTAATTGTCCAAGTATTCTGTCCTTCCCGTTGTATTAATAGGTACTCTATTGTAGATTGATTGAATTTTGAAGATTTTAGCTGATGGGATTAGATTAGAGTCTAATTCTCCTTGAAAACTCTCATTTCCTAGAATTTGGGTTCAGTGGATGTAATCAATCATTTCTAGAATCTGCTGAAAAAATGAAATTCATGTTTAGAAGAAAAATACTTCAGCATAACATTTTTTGGCAGTTCAAATCTATATTGTTCTGAAAAGTTCACGTCTGTCCCAAGGCAGTTCAAGTTTATCTATACAATTTTTACTTAATTAGTCTTTATAACGACTTGCTGTCAATGTCTTATGATTCAGCTTTTCCTTTTCTTTTATTAACACCTCTTCATTCTCCTTTCAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTATGTCACTCCACATTCTGGCAAAGTTCTTGCTTGGAATATGCTTAAATACATATCGTACAGTCTAAATCTTTATAGTTGTCTCCTTCATTCATGGTTAAATTACAAATTTCAGTCTATATGGTTTGAAGAAAGTTAGAATTTAGTTTTTATGGTTTGATAAAACCTCATAAATAGTTCTTGTGGATTTTAATTATGCTTTTGTTTGCGAGTTCACATTTATGGAAACGAGGGTGACGGTTACGGTAATTTCAACTGTTTCTTTGCTTTGATGCTTGATTTTTTTTATTCATCGGCTTTAAGTGGCTGTGCAGGTGCATAACAGGCGTCCACCGTGGTCTGTCCAGCAGGGACAAGGAGCCCCTCCTACCAACTTTGTCCAGTAG

mRNA sequence

ATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTCCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTGCATAACAGGCGTCCACCGTGGTCTGTCCAGCAGGGACAAGGAGCCCCTCCTACCAACTTTGTCCAGTAG

Coding sequence (CDS)

ATGGATGTCCATGAAATCGATAAAGACGAAGATGACGGGCCTCCTCCTGGATGGGAACCCATCACTCCGCCGCTTCCGCTACCGCCGCCGCCACTTTCTTCCGATATGGCACAAATGGTCTGTGGTACCTGCCGTCGCCTACTTAAGTATTTAAAGGGAGCCAGATGTGTTCAGTGCTCGTGCTGTTCAACAGTTAACTTTGTTTTAGAAGCTCACGAGGTTGGACAAGTTAAATGTGGTTCTTGTGCAGTGTTGCTTATGTACCCGTATGGAGCATCATCAGTTAGGTGTTCCTCGTGTACCAGTGTGACGGAAATTGGGGTGCATAACAGGCGTCCACCGTGGTCTGTCCAGCAGGGACAAGGAGCCCCTCCTACCAACTTTGTCCAGTAG

Protein sequence

MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHEVGQVKCGSCAVLLMYPYGASSVRCSSCTSVTEIGVHNRRPPWSVQQGQGAPPTNFVQ
Homology
[Close]
BLAST of Cla97C03G057330.1 vs. NCBI nr
Match: XP_004146601.1 (PREDICTED: protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical protein Csa_1G073830 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 6.7e-43
Identity = 125/131 (95.42%), Postives = 126/131 (96.18%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120
           SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVHQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Cla97C03G057330.1 vs. NCBI nr
Match: XP_023001758.1 (protein LOL2 [Cucurbita maxima])

HSP 1 Score: 176.4 bits (446), Expect = 6.3e-41
Identity = 121/131 (92.37%), Postives = 125/131 (95.42%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLP-LPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           M++HEI+KDEDDGPPPGWEPITPPLP  PP PLSSDMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MEIHEIEKDEDDGPPPGWEPITPPLPQQPPQPLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120
           SCCSTVN+VLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ
Sbjct: 61  SCCSTVNYVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTN VQ
Sbjct: 121 GQAAPPTNSVQ 131

[Close]
BLAST of Cla97C03G057330.1 vs. NCBI nr
Match: XP_008442544.1 (PREDICTED: protein LOL2 isoform X4 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 1.1e-40
Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPP-PPLSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120
           S CSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Cla97C03G057330.1 vs. NCBI nr
Match: XP_011653178.1 (PREDICTED: protein LOL2 isoform X1 [Cucumis sativus])

HSP 1 Score: 171.4 bits (433), Expect = 2.0e-39
Identity = 120/132 (90.91%), Postives = 122/132 (92.42%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPP--LSSDMAQMVCGTCRRLLKYLKGARCVQ 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPPPP   S+DMAQMVCGTCRRLLKYLKGAR VQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ 120
           CSCCSTVNFVL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSV 
Sbjct: 61  CSCCSTVNFVLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVH 120

Query: 121 QGQGAPPTNFVQ 131
           QGQ APPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]
BLAST of Cla97C03G057330.1 vs. NCBI nr
Match: XP_008442535.1 (PREDICTED: protein LOL2 isoform X3 [Cucumis melo])

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 121/132 (91.67%), Postives = 122/132 (92.42%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPLSS--DMAQMVCGTCRRLLKYLKGARCVQ 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P  S  DMAQMVCGTCRRLLKYLKGAR VQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ 120
           CS CSTVNFVLEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ 120

Query: 121 QGQGAPPTNFVQ 131
           QGQ APPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]
BLAST of Cla97C03G057330.1 vs. TrEMBL
Match: tr|A0A0A0LXE3|A0A0A0LXE3_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 4.4e-43
Identity = 125/131 (95.42%), Postives = 126/131 (96.18%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPPPP LSSDMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPPPQLSSDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120
           SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSV Q
Sbjct: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVHQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Cla97C03G057330.1 vs. TrEMBL
Match: tr|A0A1S3B6Q2|A0A1S3B6Q2_CUCME (protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 175.6 bits (444), Expect = 7.1e-41
Identity = 123/131 (93.89%), Postives = 124/131 (94.66%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPP-PPLSSDMAQMVCGTCRRLLKYLKGARCVQC 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61  SCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120
           S CSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ
Sbjct: 61  SWCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQ 120

Query: 121 GQGAPPTNFVQ 131
           GQ APPTNFVQ
Sbjct: 121 GQAAPPTNFVQ 131

[Close]
BLAST of Cla97C03G057330.1 vs. TrEMBL
Match: tr|A0A1S3B6K2|A0A1S3B6K2_CUCME (protein LOL2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 6.6e-39
Identity = 121/132 (91.67%), Postives = 122/132 (92.42%), Query Frame = 0 

Query: 1   MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPLSS--DMAQMVCGTCRRLLKYLKGARCVQ 60
           MDVHEI+KDEDDGPPPGWEPITP LPLPP P  S  DMAQMVCGTCRRLLKYLKGAR VQ
Sbjct: 1   MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61  CSCCSTVNFVLEAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ 120
           CS CSTVNFVLEA XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ
Sbjct: 61  CSWCSTVNFVLEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQ 120

Query: 121 QGQGAPPTNFVQ 131
           QGQ APPTNFVQ
Sbjct: 121 QGQAAPPTNFVQ 132

[Close]
BLAST of Cla97C03G057330.1 vs. TrEMBL
Match: tr|A0A1S3B6N7|A0A1S3B6N7_CUCME (protein LOL2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.0e-28
Identity = 66/73 (90.41%), Postives = 67/73 (91.78%), Query Frame = 0 

Query: 1  MDVHEIDKDEDDGPPPGWEPITPPLPLPP-PPLSSDMAQMVCGTCRRLLKYLKGARCVQC 60
          MDVHEI+KDEDDGPPPGWEPITP LPLPP P LS DMAQMVCGTCRRLLKYLKGAR VQC
Sbjct: 1  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPDMAQMVCGTCRRLLKYLKGARYVQC 60

Query: 61 SCCSTVNFVLEAH 73
          S CSTVNFVLEAH
Sbjct: 61 SWCSTVNFVLEAH 73

[Close]
BLAST of Cla97C03G057330.1 vs. TrEMBL
Match: tr|A0A1S3B5V8|A0A1S3B5V8_CUCME (protein LOL2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 2.9e-26
Identity = 64/73 (87.67%), Postives = 65/73 (89.04%), Query Frame = 0 

Query: 1  MDVHEIDKDEDDGPPPGWEPITPPLPLPPPPLSS--DMAQMVCGTCRRLLKYLKGARCVQ 60
          MDVHEI+KDEDDGPPPGWEPITP LPLPP P  S  DMAQMVCGTCRRLLKYLKGAR VQ
Sbjct: 1  MDVHEIEKDEDDGPPPGWEPITPSLPLPPQPQLSPADMAQMVCGTCRRLLKYLKGARYVQ 60

Query: 61 CSCCSTVNFVLEA 72
          CS CSTVNFVLEA
Sbjct: 61 CSWCSTVNFVLEA 73

[Close]
BLAST of Cla97C03G057330.1 vs. Swiss-Prot
Match: sp|Q704V3|LOL5_ORYSJ (Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.2e-08
Identity = 29/57 (50.88%), Postives = 39/57 (68.42%), Query Frame = 0 

Query: 16  PGWEPITPPLPLPPPP-LSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEA 72
           P  +   P +P PP P L+ ++ QMVCG+CR LL Y +GA  V C+CC T+N+VLEA
Sbjct: 47  PCLQDSVPLVPPPPSPYLNKEVGQMVCGSCRILLAYFRGAGYVHCTCCQTMNYVLEA 103

[Close]
BLAST of Cla97C03G057330.1 vs. Swiss-Prot
Match: sp|O65426|LOL2_ARATH (Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1)

HSP 1 Score: 55.8 bits (133), Expect = 4.0e-07
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 26  PLPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHXXXXXXXXXXXXX 85
           P P      + AQMVCG+CRRLL YL+G++ V+CS C TVN VL   XXXXXXXXXXXXX
Sbjct: 48  PNPTTVEIPEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLXXXXXXXXXXXXXXXX 107

Query: 86  XXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQG 121
           XXXXXXXXXXXXXXXXXXX      +RPPWS QQG
Sbjct: 108 XXXXXXXXXXXXXXXXXXXXXXXXXKRPPWSEQQG 142

[Close]
BLAST of Cla97C03G057330.1 vs. TAIR10
Match: AT4G21610.1 (lsd one like 2)

HSP 1 Score: 55.8 bits (133), Expect = 2.2e-08
Identity = 65/95 (68.42%), Postives = 72/95 (75.79%), Query Frame = 0 

Query: 26  PLPPPPLSSDMAQMVCGTCRRLLKYLKGARCVQCSCCSTVNFVLEAHXXXXXXXXXXXXX 85
           P P      + AQMVCG+CRRLL YL+G++ V+CS C TVN VL   XXXXXXXXXXXXX
Sbjct: 48  PNPTTVEIPEKAQMVCGSCRRLLSYLRGSKHVKCSSCQTVNLVLXXXXXXXXXXXXXXXX 107

Query: 86  XXXXXXXXXXXXXXXXXXXEIGVHNRRPPWSVQQG 121
           XXXXXXXXXXXXXXXXXXX      +RPPWS QQG
Sbjct: 108 XXXXXXXXXXXXXXXXXXXXXXXXXKRPPWSEQQG 142

The following BLAST results are available for this feature:
BLAST of Cla97C03G057330.1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_004146601.16.7e-4395.42PREDICTED: protein LOL2 isoform X2 [Cucumis sativus] >KGN64676.1 hypothetical pr... [more]
XP_023001758.16.3e-4192.37protein LOL2 [Cucurbita maxima][more]
XP_008442544.11.1e-4093.89PREDICTED: protein LOL2 isoform X4 [Cucumis melo][more]
XP_011653178.12.0e-3990.91PREDICTED: protein LOL2 isoform X1 [Cucumis sativus][more]
XP_008442535.11.0e-3891.67PREDICTED: protein LOL2 isoform X3 [Cucumis melo][more]
BLAST of Cla97C03G057330.1 vs. TrEMBL
Match NameE-valueIdentityDescription
tr|A0A0A0LXE3|A0A0A0LXE3_CUCSA4.4e-4395.42Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G073830 PE=4 SV=1[more]
tr|A0A1S3B6Q2|A0A1S3B6Q2_CUCME7.1e-4193.89protein LOL2 isoform X4 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1[more]
tr|A0A1S3B6K2|A0A1S3B6K2_CUCME6.6e-3991.67protein LOL2 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1[more]
tr|A0A1S3B6N7|A0A1S3B6N7_CUCME4.0e-2890.41protein LOL2 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1[more]
tr|A0A1S3B5V8|A0A1S3B5V8_CUCME2.9e-2687.67protein LOL2 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103486365 PE=4 SV=1[more]
BLAST of Cla97C03G057330.1 vs. Swiss-Prot
Match NameE-valueIdentityDescription
sp|Q704V3|LOL5_ORYSJ6.2e-0850.88Protein LOL5 OS=Oryza sativa subsp. japonica OX=39947 GN=LOL5 PE=2 SV=1[more]
sp|O65426|LOL2_ARATH4.0e-0768.42Protein LOL2 OS=Arabidopsis thaliana OX=3702 GN=LOL2 PE=1 SV=1[more]
BLAST of Cla97C03G057330.1 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G21610.12.2e-0868.42lsd one like 2[more]
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: INTERPRO
TermDefinition
IPR005735Znf_LSD1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Cla97C03G057330Cla97C03G057330gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Cla97C03G057330.1Cla97C03G057330.1-proteinpolypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C03G057330.1.CDS.4Cla97C03G057330.1.CDS.4CDS
Cla97C03G057330.1.CDS.3Cla97C03G057330.1.CDS.3CDS
Cla97C03G057330.1.CDS.2Cla97C03G057330.1.CDS.2CDS
Cla97C03G057330.1.CDS.1Cla97C03G057330.1.CDS.1CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Cla97C03G057330.1.exon.4Cla97C03G057330.1.exon.4exon
Cla97C03G057330.1.exon.3Cla97C03G057330.1.exon.3exon
Cla97C03G057330.1.exon.2Cla97C03G057330.1.exon.2exon
Cla97C03G057330.1.exon.1Cla97C03G057330.1.exon.1exon


InterPro
Analysis Name: InterPro Annotations of watermelon 97103 v2
Date Performed: 2019-05-12
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005735Zinc finger, LSD1-typePFAMPF06943zf-LSD1coord: 79..103
e-value: 5.4E-11
score: 42.0
coord: 41..65
e-value: 1.3E-6
score: 28.0
IPR005735Zinc finger, LSD1-typeTIGRFAMTIGR01053TIGR01053coord: 38..68
e-value: 2.3E-12
score: 44.3
coord: 76..105
e-value: 3.3E-12
score: 43.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..15
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..31
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 16..31
NoneNo IPR availablePANTHERPTHR31747:SF4PROTEIN LOL2coord: 4..127
NoneNo IPR availablePANTHERPTHR31747FAMILY NOT NAMEDcoord: 4..127