Cla022071 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla022071
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Unknown Protein (AHRD V1)
Location	Chr8 : 20096446 .. 20096910 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTGGAGTATCCTCTTTCTCAGTGGGATTATCTCGATCTATTCATACTACGCCCGATCCTTGCAGTTGTGTTCACTTTCTCCTTGATTTCTCTCGGTATTTTGTTCTTCTTTCCTATGATTATTTTGTGTAATTCCTGTATTTCTAATGTCTATTTCTGCTTAGGTTTTTCAATTTTGAAATCCGATTTCTATTTCTGTAGTATTTATTCAATCCTGCGTTGCATTGTTAATTGGTATGGTTGCGTAGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCGTCAAGCCGAAGCCTCCGACGCGCCGGTTATCGAAGTTTTATGATAGTCTGAATTCCCAAACTTCAGCTTCTGGCTGGTTAGTTCTTTTTGTTATACCTGCTATTTGTTAG

mRNA sequence

ATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTGGAGTATCCTCTTTCTCAGTGGGATTATCTCGATCTATTCATACTACGCCCGATCCTTGCAGTTGTGTTCACTTTCTCCTTGATTTCTCTCGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCGTCAAGCCGAAGCCTCCGACGCGCCGGTTATCGAAGTTTTATGATAGTCTGAATTCCCAAACTTCAGCTTCTGGCTGGTTAGTTCTTTTTGTTATACCTGCTATTTGTTAG

Coding sequence (CDS)

ATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTGGAGTATCCTCTTTCTCAGTGGGATTATCTCGATCTATTCATACTACGCCCGATCCTTGCAGTTGTGTTCACTTTCTCCTTGATTTCTCTCGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCGTCAAGCCGAAGCCTCCGACGCGCCGGTTATCGAAGTTTTATGATAGTCTGAATTCCCAAACTTCAGCTTCTGGCTGGTTAGTTCTTTTTGTTATACCTGCTATTTGTTAG

Protein sequence

MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEIFGLRKKPVKPKPPTRRLSKFYDSLNSQTSASGWLVLFVIPAIC

Homology

[Close]

BLAST of Cla022071 vs. TrEMBL
Match: A0A0A0KH75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399720 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.3e-39
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSFSS EY LS WDYL+L+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFSSFEYSLSHWDYLNLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSASG 93
          FGLRKKP K KPPTRRLSKFYDSLNSQTSASG
Sbjct: 61 FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of Cla022071 vs. TrEMBL
Match: A0A061FGG1_THECC (Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-27
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 1   MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
           MESSSSS SS    LS W+YL+L ++RPI+A+ F  S I L W+LAWKLVLVHVPLVQEI
Sbjct: 29  MESSSSSTSSNF--LSFWNYLNLLLVRPIIAIFFVLSFIFLWWWLAWKLVLVHVPLVQEI 88

Query: 61  FGLRKKPVKPKPPTRRLSKFYDSLNSQTSAS 92
           FGLRKKPVKPKPPTRRLS++Y+S+N+Q+S+S
Sbjct: 89  FGLRKKPVKPKPPTRRLSRYYNSINAQSSSS 117

[Close]

BLAST of Cla022071 vs. TrEMBL
Match: A0A061FNP2_THECC (Uncharacterized protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-27
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 1  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSS SS    LS W+YL+L ++RPI+A+ F  S I L W+LAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSTSSNF--LSFWNYLNLLLVRPIIAIFFVLSFIFLWWWLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSAS 92
          FGLRKKPVKPKPPTRRLS++Y+S+N+Q+S+S
Sbjct: 61 FGLRKKPVKPKPPTRRLSRYYNSINAQSSSS 89

[Close]

BLAST of Cla022071 vs. TrEMBL
Match: A0A061FHH4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 5.6e-27
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 1  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSS SS    LS W+YL+L ++RPI+A+ F  S I L W+LAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSTSSNF--LSFWNYLNLLLVRPIIAIFFVLSFIFLWWWLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSAS 92
          FGLRKKPVKPKPPTRRLS++Y+S+N+Q+S+S
Sbjct: 61 FGLRKKPVKPKPPTRRLSRYYNSINAQSSSS 89

[Close]

BLAST of Cla022071 vs. TrEMBL
Match: A0A0D2QMB7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G241700 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 9.5e-27
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 1  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSS +SL + LS W+YL+  + RP+LAV+F  S I L W LAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSS-TSLNF-LSYWNYLNFLLFRPVLAVLFVLSFIILWWLLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSAS 92
          FGLRKKPVKPKPPTRRLS++Y+S+NS +S S
Sbjct: 61 FGLRKKPVKPKPPTRRLSRYYNSINSHSSTS 89

[Close]

BLAST of Cla022071 vs. NCBI nr
Match: gi|659089174|ref|XP_008445365.1| (PREDICTED: uncharacterized protein LOC103488423 isoform X1 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 4.4e-41
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 1  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSF S EY LS WDYLDL+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSASGWLVLF 98
          FGLRKKP K KPPTRRLSKFYDSLNSQTSASGW  ++
Sbjct: 61 FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASGWFCVY 97

[Close]

BLAST of Cla022071 vs. NCBI nr
Match: gi|659089177|ref|XP_008445367.1| (PREDICTED: uncharacterized protein LOC103488423 isoform X2 [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 9.7e-41
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 1


Query: 1  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSF S EY LS WDYLDL+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSASGW 94
          FGLRKKP K KPPTRRLSKFYDSLNSQTSASGW
Sbjct: 61 FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASGW 93

[Close]

BLAST of Cla022071 vs. NCBI nr
Match: gi|778715738|ref|XP_011657443.1| (PREDICTED: uncharacterized protein LOC101215134 isoform X1 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 1  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSFSS EY LS WDYL+L+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFSSFEYSLSHWDYLNLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSASG 93
          FGLRKKP K KPPTRRLSKFYDSLNSQTSASG
Sbjct: 61 FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of Cla022071 vs. NCBI nr
Match: gi|659089179|ref|XP_008445368.1| (PREDICTED: uncharacterized protein LOC103488423 isoform X3 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 1


Query: 1  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSF S EY LS WDYLDL+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSASG 93
          FGLRKKP K KPPTRRLSKFYDSLNSQTSASG
Sbjct: 61 FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of Cla022071 vs. NCBI nr
Match: gi|1009136541|ref|XP_015885581.1| (PREDICTED: uncharacterized protein LOC107420988 [Ziziphus jujuba])

HSP 1 Score: 129.4 bits (324), Expect = 3.6e-27
Identity = 65/88 (73.86%), Postives = 73/88 (82.95%), Query Frame = 1


Query: 5  SSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEIFGLR 64
          SSS SS E   S WDYL LF+LRP+ AV+F F LISLGW LAWKLVLVHVPLVQEIFGLR
Sbjct: 3  SSSLSS-EASFSPWDYLSLFLLRPVSAVLFVFLLISLGWLLAWKLVLVHVPLVQEIFGLR 62

Query: 65 KKPVKPKPPTRRLSKFYDSLNSQTSASG 93
          KKPVKPKP TRRLSK Y +++S+ +ASG
Sbjct: 63 KKPVKPKPLTRRLSKIYSNIDSRKNASG 89

The following BLAST results are available for this feature:

BLAST of Cla022071 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH75_CUCSA	1.3e-39	90.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399720 PE=4 SV=1	[more]
A0A061FGG1_THECC	5.6e-27	70.33	Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE...	[more]
A0A061FNP2_THECC	5.6e-27	70.33	Uncharacterized protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE...	[more]
A0A061FHH4_THECC	5.6e-27	70.33	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1	[more]
A0A0D2QMB7_GOSRA	9.5e-27	70.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G241700 PE=4 SV=1	[more]

BLAST of Cla022071 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089174\|ref\|XP_008445365.1\|	4.4e-41	86.60	PREDICTED: uncharacterized protein LOC103488423 isoform X1 [Cucumis melo]	[more]
gi\|659089177\|ref\|XP_008445367.1\|	9.7e-41	90.32	PREDICTED: uncharacterized protein LOC103488423 isoform X2 [Cucumis melo]	[more]
gi\|778715738\|ref\|XP_011657443.1\|	1.8e-39	90.22	PREDICTED: uncharacterized protein LOC101215134 isoform X1 [Cucumis sativus]	[more]
gi\|659089179\|ref\|XP_008445368.1\|	1.8e-39	90.22	PREDICTED: uncharacterized protein LOC103488423 isoform X3 [Cucumis melo]	[more]
gi\|1009136541\|ref\|XP_015885581.1\|	3.6e-27	73.86	PREDICTED: uncharacterized protein LOC107420988 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU13438	watermelon EST collection version 2.0	transcribed_cluster
WMU17402	watermelon unigene v2 vs TrEMBL	transcribed_cluster
WMU28353	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla022071	Cla022071.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU28353	WMU28353	transcribed_cluster
WMU13438	WMU13438	transcribed_cluster
WMU17402	WMU17402	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37192	FAMILY NOT NAMED	coord: 4..93 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla022071	Cla97C08G153760	Watermelon (97103) v2	wmwmbB100
Cla022071	Csa6G399720	Cucumber (Chinese Long) v2	cuwmB471
Cla022071	ClCG08G010860	Watermelon (Charleston Gray)	wcgwmB400
Cla022071	CSPI06G20640	Wild cucumber (PI 183967)	cpiwmB486
Cla022071	Cucsa.005000	Cucumber (Gy14) v1	cgywmB057
Cla022071	CmaCh05G004770	Cucurbita maxima (Rimu)	cmawmB751
Cla022071	CmoCh05G005000	Cucurbita moschata (Rifu)	cmowmB746
Cla022071	Lsi08G009400	Bottle gourd (USVL1VR-Ls)	lsiwmB465
Cla022071	CsGy6G020030	Cucumber (Gy14) v2	cgybwmB442
Cla022071	MELO3C030294.2	Melon (DHL92) v3.6.1	medwmB296
Cla022071	Carg09233	Silver-seed gourd	carwmB0134
Cla022071	CsaV3_6G035660	Cucumber (Chinese Long) v3	cucwmB497
Cla022071	Bhi04G000597	Wax gourd	wgowmB319

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla022071	Silver-seed gourd	carwmB0649
Cla022071	Wax gourd	wgowmB299
Cla022071	Cucurbita maxima (Rimu)	cmawmB149
Cla022071	Cucurbita moschata (Rifu)	cmowmB135
Cla022071	Melon (DHL92) v3.5.1	mewmB301
Cla022071	Cucurbita pepo (Zucchini)	cpewmB099
Cla022071	Cucurbita pepo (Zucchini)	cpewmB783