WMU28353 (transcribed_cluster) Watermelon (97103) v1

Overview
NameWMU28353
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionTransmembrane protein, putative
LocationChr8 : 20084607 .. 20096967 (-)
Sequence length693
Genome Viewer
Sequences
The following sequences are available for this feature:

transcribed_cluster sequence

AGCACCCGACGGGGATTGATTGCGTGGCTGACTTCTTGTGCAACCGAGCTCTTCTAATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTGGAGTATCCTCTTTCTCAGTGGGATTATCTCGATCTATTCATACTACGCCCGATCCTTGCAGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCGTCAAGCCGAAGCCTCCGACGCGCCGGTTATCGAAGTTTTATGATAGTCTGAATTCCCAAACTTCAGCTTCTGGCTGATGTATGTTTTGAGCTTGGAGGCCATCTTAACTGAATTGCAGAACGTAGCCCAAGAGAAAGAAAGCAGTTACTGGCCAATTGTTTGTGAGGACAGAGTGAAAAGGTCCCGTCTCAAGCTCGAGATGTGTATAGCTCGTAGTGGAAGTTTATTTATACTATTCATTTTTTAATAGGAATGCACGTTTTCTGGCAGGATGAGATTCTGACAGAAAATTGGATTAATTACATCTGTTGAACTATTATGTATATAGTACCAAGTTTGAGGCTTGATTGGAATGACTTTTCAAGTGCTTAAAAATACTAACACTTTCTCTCGTGAATACTCAAAAAGTTGTTCTAAACCAGCCTTTTTGACAACCTTAAAAAAACAAAAACAAAAAAACAAAAAA
Homology
[Close]
BLAST of WMU28353 vs. TAIR10
Match: AT1G36380.1 (AT1G36380.1 unknown protein)

HSP 1 Score: 58.2 bits (139), Expect = 8.0e-09
Identity = 29/46 (63.04%), Postives = 32/46 (69.57%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTR-RLSKFYDSLNSQ 211
           WFLAWKLVL HVPLVQEIFGLR         +R R++KFY S++SQ
Sbjct: 34  WFLAWKLVLSHVPLVQEIFGLRKKTFIPKPESRGRIAKFYKSISSQ 79

Query: 212  271
           
Sbjct: 94   79

Query: 272  287
           
Sbjct: 154  79

[Close]
BLAST of WMU28353 vs. TrEMBL
Match: A0A0A0KH75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399720 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 6.0e-13
Identity = 41/50 (82.00%), Postives = 41/50 (82.00%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTRRLSKFYDSLNSQTSASG 211
           WFLAWKLVLVHVPLVQEIFGLR         TRRLSKFYDSLNSQTSASG
Sbjct: 43  WFLAWKLVLVHVPLVQEIFGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

Query: 212  271
           
Sbjct: 103  92

Query: 272  302
           
Sbjct: 163  92

[Close]
BLAST of WMU28353 vs. TrEMBL
Match: A0A0A0KH75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399720 PE=4 SV=1)

HSP 1 Score: 40.8 bits (94), Expect = 2.6e+00
Identity = 19/34 (55.88%), Postives = 22/34 (64.71%), Query Frame = 3 

Query: 57  MEXXXXXXXXLEYPLSQWDYLDLFILRPILAVGF 116
           ME         EY LS WDYL+L+ILRPILA+ F
Sbjct: 1   MESSSSSFSSFEYSLSHWDYLNLYILRPILAILF 34

Query: 117  159
           
Sbjct: 61   34


HSP 2 Score: 69.7 bits (169), Expect = 5.2e-09
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTRRLSKFYDSLNSQTSAS 211
           W+LAWKLVLVHVPLVQEIFGLR         TRRLS++Y+S+N+Q+S+S
Sbjct: 69  WWLAWKLVLVHVPLVQEIFGLRKKPVKPKPPTRRLSRYYNSINAQSSSS 117

Query: 212  271
           
Sbjct: 129  117

Query: 272  299
           
Sbjct: 189  117

[Close]
BLAST of WMU28353 vs. TrEMBL
Match: A0A061FGG1_THECC (Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1)

HSP 1 Score: 33.9 bits (76), Expect = 3.2e+02
Identity = 19/43 (44.19%), Postives = 26/43 (60.47%), Query Frame = 3 

Query: 99  LSQWDYLDLFILRPILAVGFWRGSSFLFTSLWCKKFLVCVRNP 158
           LS W+YL+L ++RPI+A+ F    SF+F   W    LV V  P
Sbjct: 41  LSFWNYLNLLLVRPIIAIFF--VLSFIFLWWWLAWKLVLVHVP 81

Query: 159  218
           
Sbjct: 101  81

Query: 219  228
           
Sbjct: 161  81


HSP 2 Score: 69.7 bits (169), Expect = 5.2e-09
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTRRLSKFYDSLNSQTSAS 211
           W+LAWKLVLVHVPLVQEIFGLR         TRRLS++Y+S+N+Q+S+S
Sbjct: 41  WWLAWKLVLVHVPLVQEIFGLRKKPVKPKPPTRRLSRYYNSINAQSSSS 89

Query: 212  271
           
Sbjct: 101  89

Query: 272  299
           
Sbjct: 161  89

[Close]
BLAST of WMU28353 vs. TrEMBL
Match: A0A061FNP2_THECC (Uncharacterized protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1)

HSP 1 Score: 33.9 bits (76), Expect = 3.2e+02
Identity = 19/43 (44.19%), Postives = 26/43 (60.47%), Query Frame = 3 

Query: 99  LSQWDYLDLFILRPILAVGFWRGSSFLFTSLWCKKFLVCVRNP 158
           LS W+YL+L ++RPI+A+ F    SF+F   W    LV V  P
Sbjct: 13  LSFWNYLNLLLVRPIIAIFF--VLSFIFLWWWLAWKLVLVHVP 53

Query: 159  218
           
Sbjct: 73   53

Query: 219  228
           
Sbjct: 133  53


HSP 2 Score: 69.7 bits (169), Expect = 5.2e-09
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTRRLSKFYDSLNSQTSAS 211
           W+LAWKLVLVHVPLVQEIFGLR         TRRLS++Y+S+N+Q+S+S
Sbjct: 41  WWLAWKLVLVHVPLVQEIFGLRKKPVKPKPPTRRLSRYYNSINAQSSSS 89

Query: 212  271
           
Sbjct: 101  89

Query: 272  299
           
Sbjct: 161  89

[Close]
BLAST of WMU28353 vs. TrEMBL
Match: A0A061FHH4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1)

HSP 1 Score: 33.9 bits (76), Expect = 3.2e+02
Identity = 19/43 (44.19%), Postives = 26/43 (60.47%), Query Frame = 3 

Query: 99  LSQWDYLDLFILRPILAVGFWRGSSFLFTSLWCKKFLVCVRNP 158
           LS W+YL+L ++RPI+A+ F    SF+F   W    LV V  P
Sbjct: 13  LSFWNYLNLLLVRPIIAIFF--VLSFIFLWWWLAWKLVLVHVP 53

Query: 159  218
           
Sbjct: 73   53

Query: 219  228
           
Sbjct: 133  53


HSP 2 Score: 68.2 bits (165), Expect = 1.5e-08
Identity = 32/49 (65.31%), Postives = 37/49 (75.51%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTRRLSKFYDSLNSQTSAS 211
           W LAWKLVLVHVPLVQEIFGLR         TRRLS++Y+S+NS +S S
Sbjct: 41  WLLAWKLVLVHVPLVQEIFGLRKKPVKPKPPTRRLSRYYNSINSHSSTS 89

Query: 212  271
           
Sbjct: 101  89

Query: 272  299
           
Sbjct: 161  89

[Close]
BLAST of WMU28353 vs. NCBI nr
Match: gi|659089174|ref|XP_008445365.1| (PREDICTED: uncharacterized protein LOC103488423 isoform X1 [Cucumis melo])

HSP 1 Score: 89.0 bits (219), Expect = 1.2e-14
Identity = 54/88 (61.36%), Postives = 59/88 (67.05%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTRRLSKFYDSLNSQTSASG*CMF*AWR-- 211
           WFLAWKLVLVHVPLVQEIFGLR         TRRLSKFYDSLNSQTSASG   F  +R  
Sbjct: 43  WFLAWKLVLVHVPLVQEIFGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG--WFCVYRCL 102

Query: 212 --PS*LNCRT*PK--RKKAVTGQLFVRT 271
              + LN     K  ++ + TGQLFVRT
Sbjct: 103 SLEAILNELQNLKLGKESSSTGQLFVRT 128

Query: 272  331
           
Sbjct: 163  128

Query: 332  391
           
Sbjct: 223  128

Query: 392  398
           
Sbjct: 283  128

[Close]
BLAST of WMU28353 vs. NCBI nr
Match: gi|778715738|ref|XP_011657443.1| (PREDICTED: uncharacterized protein LOC101215134 isoform X1 [Cucumis sativus])

HSP 1 Score: 83.6 bits (205), Expect = 5.0e-13
Identity = 41/50 (82.00%), Postives = 41/50 (82.00%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTRRLSKFYDSLNSQTSASG 211
           WFLAWKLVLVHVPLVQEIFGLR         TRRLSKFYDSLNSQTSASG
Sbjct: 43  WFLAWKLVLVHVPLVQEIFGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

Query: 212  271
           
Sbjct: 103  92

Query: 272  302
           
Sbjct: 163  92

[Close]
BLAST of WMU28353 vs. NCBI nr
Match: gi|659089177|ref|XP_008445367.1| (PREDICTED: uncharacterized protein LOC103488423 isoform X2 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 5.0e-13
Identity = 41/50 (82.00%), Postives = 41/50 (82.00%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTRRLSKFYDSLNSQTSASG 211
           WFLAWKLVLVHVPLVQEIFGLR         TRRLSKFYDSLNSQTSASG
Sbjct: 43  WFLAWKLVLVHVPLVQEIFGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

Query: 212  271
           
Sbjct: 103  92

Query: 272  302
           
Sbjct: 163  92

[Close]
BLAST of WMU28353 vs. NCBI nr
Match: gi|659089179|ref|XP_008445368.1| (PREDICTED: uncharacterized protein LOC103488423 isoform X3 [Cucumis melo])

HSP 1 Score: 83.6 bits (205), Expect = 5.0e-13
Identity = 41/50 (82.00%), Postives = 41/50 (82.00%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTRRLSKFYDSLNSQTSASG 211
           WFLAWKLVLVHVPLVQEIFGLR         TRRLSKFYDSLNSQTSASG
Sbjct: 43  WFLAWKLVLVHVPLVQEIFGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

Query: 212  271
           
Sbjct: 103  92

Query: 272  302
           
Sbjct: 163  92

[Close]
BLAST of WMU28353 vs. NCBI nr
Match: gi|590598492|ref|XP_007018911.1| (Uncharacterized protein isoform 2, partial [Theobroma cacao])

HSP 1 Score: 70.5 bits (171), Expect = 4.4e-09
Identity = 32/49 (65.31%), Postives = 40/49 (81.63%), Query Frame = 2 

Query: 152 WFLAWKLVLVHVPLVQEIFGLRXXXXXXXXXTRRLSKFYDSLNSQTSAS 211
           W+LAWKLVLVHVPLVQEIFGLR         TRRLS++Y+S+N+Q+S+S
Sbjct: 69  WWLAWKLVLVHVPLVQEIFGLRKKPVKPKPPTRRLSRYYNSINAQSSSS 117

Query: 212  271
           
Sbjct: 129  117

Query: 272  299
           
Sbjct: 189  117

The following BLAST results are available for this feature:
BLAST of WMU28353 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G36380.18.0e-0963.04 unknown protein[more]
BLAST of WMU28353 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KH75_CUCSA6.0e-1382.00Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399720 PE=4 SV=1[more]
A0A0A0KH75_CUCSA2.6e+0055.88Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399720 PE=4 SV=1[more]
A0A061FGG1_THECC3.2e+0244.19Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE... [more]
A0A061FNP2_THECC3.2e+0244.19Uncharacterized protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE... [more]
A0A061FHH4_THECC3.2e+0244.19Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1[more]
BLAST of WMU28353 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089174|ref|XP_008445365.1|1.2e-1461.36PREDICTED: uncharacterized protein LOC103488423 isoform X1 [Cucumis melo][more]
gi|778715738|ref|XP_011657443.1|5.0e-1382.00PREDICTED: uncharacterized protein LOC101215134 isoform X1 [Cucumis sativus][more]
gi|659089177|ref|XP_008445367.1|5.0e-1382.00PREDICTED: uncharacterized protein LOC103488423 isoform X2 [Cucumis melo][more]
gi|659089179|ref|XP_008445368.1|5.0e-1382.00PREDICTED: uncharacterized protein LOC103488423 isoform X3 [Cucumis melo][more]
gi|590598492|ref|XP_007018911.1|4.4e-0965.31Uncharacterized protein isoform 2, partial [Theobroma cacao][more]
Relationships

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla022069Cla022069gene
Cla022070Cla022070gene
Cla022071Cla022071gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0044546S1_0044546EST
S1_0097648S1_0097648EST
S2_0098544S2_0098544EST
S2_0177988S2_0177988EST
S3_0054041S3_0054041EST
S3_0067740S3_0067740EST
S3_0078386S3_0078386EST
S4_0008128S4_0008128EST
S4_0058175S4_0058175EST
WMN34C01WMN34C01EST