Carg09233 (gene) Silver-seed gourd

NameCarg09233
Typegene
OrganismCucurbita argyrosperma (Silver-seed gourd)
DescriptionTransmembrane protein
LocationCucurbita_argyrosperma_scaffold_018 : 94541 .. 97244 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
GATTGCGTGACTCACTCCTCGTGCAATTGAGCTCTTCTAATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTCGAGAATTCTTTTTCTCAATGGGATTATCTCAATCTATTCATACTACGCCCGATCCTTGCCGTCGTGTTCACGTTCTCCTTGATTTCTCTTGGTAATTTATTCTCCTTTCTCTTGATTATTTCGTGCAATTCCTGTATTTCTGATGTCTATTTCTGCTTAGGTTTTGTAATCGGAAGTCCGATCTCTATTTCTGTAGTATTTATTTAATCCTGCGCTGCACTGTTAATTGGAGTGATTGCGTAGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAATCCGTCAAACCGAAGCCTCCAACCCGCCGACTATCGAAATTTTATAATAATTTGGATTCCCAAACTTCAGCTTCTGGCTGGTGAGTTCTTTTTGTTGTCGTTGTTTTATACCTGCAATTTGTTTGCTAAGCTCATCTGGAATTGTTTACTAAGGTTTAACCGTCGAATGTGAAATTTGTATTCGTCTTCTGTTATTATACTTTTCTTCCATGTGAAATCTCATATCAGAAATTTGATCACCTTGTAACTTAATTACATGGAAGGGGAAAAAAGTACAAAAATCAACGCCACTCATGAAGAGTCGCTATCTTGGTTTCTTTCATCTGCTGGAAGATTCTTCTTGTCGTGTATTTATGTGCTTGAGGTGATCGGTATAATATAGATGTTTGTGTATCCTGCTTCATGCAATACCGAGTATAGAAGGGAAGATCATGATAACATTATCATTTTCTTAGAGAATATTATCTCTGCATGTTTTATTTTGCCTTGCCTGCCCATGATCTGCGTTTAGAGCGCAAATATGAGCATGTAGACCGTATTCTTTTGTTAGACAATTTCAAGTATACTGCTTTTGGGCTCCCAATGTGGCACGAGTTTGGGGTTTCTTAATATTTAGATATCCAGAATAGGCTTTAGCATATATGATTACAAGAACACCATTCTATTTTCTGTGATATAGATAAAATCCTCAACTTTATTTACTAAAGATAGAATTTTGAACTCGATCTTTTGTCATCCATCTTGCAACCAATTTGGTTGTGAAACGTACGAACCATCTTCCTTCCACATGCCCCATCTTGGAGTCTACCATTACCATGTGCACATTACAACTTATCTACCAGCCAATCTTGGTCGTGCACTTATCTTGCCTACCATCTTTGTGAAATCTCACATCGGTTGGGGAGGAGAACGAAGCATTCTTTACAAGGGTGTGGAAACCTCTCCCTAACAGACGCGTTTTAAAACTTTGAGGTGAAGCCCGAGAAGGAAAAACCCAAAGAGGACAATTTCTGCTAGCTGTGGGTTTGGGCCGTTATAATCTTGCAACTCATCTCGTCTGTTTCCTCCGTGGCTTTCACAATCATTTCCCTATCACTATTCTTTTGCAGTGCTCTCTTTTCCAAATTTCAACATCTCAGTCCAGCACTACCTTTTTGTATAGGAATAAATGTAGTTTCACTAAGCAAAAAACCGATGCTTGTATTCAGTAAAAAGTAGATCAAAGTCTTATACCATTCTTTTTTGGGTTTGTTTCGGTTAAATCCCTCATTTTTCACTTCTATATTGTTCCCGTTGATGACACTTCTTCCAAGATGATGTTTTTACTGATAAATGTTATCTGATCACCCATGGATATTTGTTGGATAGTGCAGAAACAACTAAATTTTGGCCTCAGTAATAGATAGGTTTTCTGTCGACAGATGTATGTTTTGAGCTTGGAGGCCATCTTAACTGAAATGTAGAATGTAAACCCAAAAGAAATAGTGCAGTATTGGCCAATTGTTTGAGATGTGTATAGCTCAAAGTGAAAGTTCACTTAGGAATGCACGTTTTCTGCCAGAACGACGTTCTGACCGAAAATAAGACTAATTACATCTATTAAACGACTCCTGTATATAGTACAAGTTTTAAGTCGATTTGGAATTACTTCTCAAGTGCTTAAAAATACTTAAAAAGTTGTTCCAAACAAGCCCTTTTAATGCTTGAATTGTTTGATAGTTTGATAGTTTGATCAAATGAAGGTGGAACAATGTCAAGATCTTGACCACCAAGCCTTGATGATTTGTTGGAATGAACAGTAATTATGGTTGCTATAGCCTTGATGATTTTTAAAATTGCTTTTCAGATGACTGTGATGGTGATTGCCTCATCGAGTTCTGACATGAGCAATGGCTTATGCTTTGTTTTATTGTGACTGTAAATTCGGGTTACTCGAGTTCTTCAAGTTGTATATATTCACCTCTCTTCTCAATTTCAAAGTCTTTACTCCTGTAAATTTGGGTTACTTGTATTTGTTGGACTAGTTATGGCTATTTTATCTTCATAAAGTTCTTTTTTTTTTCATTATTAATTGAGTTTATTCTTAAAGAAACTATGAATAGCATTTATTCGAAAAGGCGGGCTGTTACGGTACGAGTGTGATTGTGGGGTTTTGTCGTCATTTGGATTGGGGTGGAGTGCTCTGGTTTGTGAGTTTCCCAGGTTGGTTTAGTAATTAGGGGTCGTCTTGAGATTGATTGAAAAGGCAGCCCAGCTGCCCCTCTCCTTAGTCGCCTACCTACTCGTGCTCGTAACTCGATCAGAGGTCAACAAGT

mRNA sequence

GATTGCGTGACTCACTCCTCGTGCAATTGAGCTCTTCTAATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTCGAGAATTCTTTTTCTCAATGGGATTATCTCAATCTATTCATACTACGCCCGATCCTTGCCGTCGTGTTCACGTTCTCCTTGATTTCTCTTGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAATCCGTCAAACCGAAGCCTCCAACCCGCCGACTATCGAAATTTTATAATAATTTGGATTCCCAAACTTCAGCTTCTGGCTGATGACTGTGATGGTGATTGCCTCATCGAGTTCTGACATGAGCAATGGCTTATGCTTTGTTTTATTGTGACTGTAAATTCGGGTTACTCGAGTTCTTCAAGTTGTATATATTCACCTCTCTTCTCAATTTCAAAGTCTTTACTCCTGTAAATTTGGGTTACTTGTATTTGTTGGACTAGTTATGGCTATTTTATCTTCATAAAGTTCTTTTTTTTTTCATTATTAATTGAGTTTATTCTTAAAGAAACTATGAATAGCATTTATTCGAAAAGGCGGGCTGTTACGGTACGAGTGTGATTGTGGGGTTTTGTCGTCATTTGGATTGGGGTGGAGTGCTCTGGTTTGTGAGTTTCCCAGGTTGGTTTAGTAATTAGGGGTCGTCTTGAGATTGATTGAAAAGGCAGCCCAGCTGCCCCTCTCCTTAGTCGCCTACCTACTCGTGCTCGTAACTCGATCAGAGGTCAACAAGT

Coding sequence (CDS)

ATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTCGAGAATTCTTTTTCTCAATGGGATTATCTCAATCTATTCATACTACGCCCGATCCTTGCCGTCGTGTTCACGTTCTCCTTGATTTCTCTTGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAATCCGTCAAACCGAAGCCTCCAACCCGCCGACTATCGAAATTTTATAATAATTTGGATTCCCAAACTTCAGCTTCTGGCTGA

Protein sequence

MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEIFGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG
BLAST of Carg09233 vs. NCBI nr
Match: XP_022961695.1 (uncharacterized protein LOC111462391 isoform X2 [Cucurbita moschata] >XP_022961696.1 uncharacterized protein LOC111462391 isoform X3 [Cucurbita moschata])

HSP 1 Score: 176.8 bits (447), Expect = 3.4e-41
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSFSSFENSFSQWDYLN+FILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFSSFENSFSQWDYLNIFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 93
          FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG
Sbjct: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

BLAST of Carg09233 vs. NCBI nr
Match: XP_022961694.1 (uncharacterized protein LOC111462391 isoform X1 [Cucurbita moschata])

HSP 1 Score: 176.8 bits (447), Expect = 3.4e-41
Identity = 91/92 (98.91%), Postives = 92/92 (100.00%), Query Frame = 0

Query: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSFSSFENSFSQWDYLN+FILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFSSFENSFSQWDYLNIFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 93
          FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG
Sbjct: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

BLAST of Carg09233 vs. NCBI nr
Match: XP_023545613.1 (uncharacterized protein LOC111804995 isoform X1 [Cucurbita pepo subsp. pepo] >XP_023545614.1 uncharacterized protein LOC111804995 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 175.3 bits (443), Expect = 9.9e-41
Identity = 91/92 (98.91%), Postives = 91/92 (98.91%), Query Frame = 0

Query: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSFSSFENS SQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFSSFENSLSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 93
          FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG
Sbjct: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

BLAST of Carg09233 vs. NCBI nr
Match: XP_022997299.1 (uncharacterized protein LOC111492244 isoform X2 [Cucurbita maxima] >XP_022997300.1 uncharacterized protein LOC111492244 isoform X3 [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 3.8e-40
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0

Query: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSFSSFENS SQWDYL+LFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFSSFENSLSQWDYLSLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 93
          FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG
Sbjct: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

BLAST of Carg09233 vs. NCBI nr
Match: XP_022997298.1 (uncharacterized protein LOC111492244 isoform X1 [Cucurbita maxima])

HSP 1 Score: 173.3 bits (438), Expect = 3.8e-40
Identity = 90/92 (97.83%), Postives = 91/92 (98.91%), Query Frame = 0

Query: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSFSSFENS SQWDYL+LFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFSSFENSLSQWDYLSLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 93
          FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG
Sbjct: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 92

BLAST of Carg09233 vs. TAIR10
Match: AT1G36380.1 (unknown protein)

HSP 1 Score: 82.8 bits (203), Expect = 1.2e-16
Identity = 41/65 (63.08%), Postives = 52/65 (80.00%), Query Frame = 0

Query: 24 FILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEIFGLRKKSVKPKPPTR-RLSKFYN 83
          F++RP+LA+ F    I+L WFLAWKLVL HVPLVQEIFGLRKK+  PKP +R R++KFY 
Sbjct: 15 FLIRPLLAISFVICFIALWWFLAWKLVLSHVPLVQEIFGLRKKTFIPKPESRGRIAKFYK 74

Query: 84 NLDSQ 88
          ++ SQ
Sbjct: 75 SISSQ 79

BLAST of Carg09233 vs. TrEMBL
Match: tr|A0A0A0KH75|A0A0A0KH75_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399720 PE=4 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.0e-35
Identity = 80/92 (86.96%), Postives = 86/92 (93.48%), Query Frame = 0

Query: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSFSSFE S S WDYLNL+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFSSFEYSLSHWDYLNLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 93
          FGLRKK  K KPPTRRLSKFY++L+SQTSASG
Sbjct: 61 FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

BLAST of Carg09233 vs. TrEMBL
Match: tr|A0A1S3BCI8|A0A1S3BCI8_CUCME (uncharacterized protein LOC103488423 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488423 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-33
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 0

Query: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSF SFE S S WDYL+L+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 93
          FGLRKK  K KPPTRRLSKFY++L+SQTSASG
Sbjct: 61 FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

BLAST of Carg09233 vs. TrEMBL
Match: tr|A0A1S3BC25|A0A1S3BC25_CUCME (uncharacterized protein LOC103488423 isoform X3 OS=Cucumis melo OX=3656 GN=LOC103488423 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-33
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 0

Query: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSF SFE S S WDYL+L+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 93
          FGLRKK  K KPPTRRLSKFY++L+SQTSASG
Sbjct: 61 FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

BLAST of Carg09233 vs. TrEMBL
Match: tr|A0A1S3BDD8|A0A1S3BDD8_CUCME (uncharacterized protein LOC103488423 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488423 PE=4 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 1.0e-33
Identity = 78/92 (84.78%), Postives = 85/92 (92.39%), Query Frame = 0

Query: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSSF SFE S S WDYL+L+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSASG 93
          FGLRKK  K KPPTRRLSKFY++L+SQTSASG
Sbjct: 61 FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

BLAST of Carg09233 vs. TrEMBL
Match: tr|A0A2I4DYK4|A0A2I4DYK4_9ROSI (uncharacterized protein LOC108984653 isoform X2 OS=Juglans regia OX=51240 GN=LOC108984653 PE=4 SV=1)

HSP 1 Score: 126.3 bits (316), Expect = 3.5e-26
Identity = 66/91 (72.53%), Postives = 78/91 (85.71%), Query Frame = 0

Query: 1  MESSSSSFSSFENSFSQWDYLNLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 60
          MESSSSS S  + S S WDYL LF+LRP+LA+VF  SLIS+GW+LAWKLVLVHVPLVQEI
Sbjct: 1  MESSSSS-SYSKYSLSPWDYLTLFLLRPVLAIVFVLSLISIGWWLAWKLVLVHVPLVQEI 60

Query: 61 FGLRKKSVKPKPPTRRLSKFYNNLDSQTSAS 92
          FGLRKK  KPKPPTRRLSK Y+++++Q S+S
Sbjct: 61 FGLRKKPFKPKPPTRRLSKIYSSMNAQNSSS 90

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_022961695.13.4e-4198.91uncharacterized protein LOC111462391 isoform X2 [Cucurbita moschata] >XP_0229616... [more]
XP_022961694.13.4e-4198.91uncharacterized protein LOC111462391 isoform X1 [Cucurbita moschata][more]
XP_023545613.19.9e-4198.91uncharacterized protein LOC111804995 isoform X1 [Cucurbita pepo subsp. pepo] >XP... [more]
XP_022997299.13.8e-4097.83uncharacterized protein LOC111492244 isoform X2 [Cucurbita maxima] >XP_022997300... [more]
XP_022997298.13.8e-4097.83uncharacterized protein LOC111492244 isoform X1 [Cucurbita maxima][more]
Match NameE-valueIdentityDescription
AT1G36380.11.2e-1663.08unknown protein[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
tr|A0A0A0KH75|A0A0A0KH75_CUCSA7.0e-3586.96Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G399720 PE=4 SV=1[more]
tr|A0A1S3BCI8|A0A1S3BCI8_CUCME1.0e-3384.78uncharacterized protein LOC103488423 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BC25|A0A1S3BC25_CUCME1.0e-3384.78uncharacterized protein LOC103488423 isoform X3 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A1S3BDD8|A0A1S3BDD8_CUCME1.0e-3384.78uncharacterized protein LOC103488423 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10... [more]
tr|A0A2I4DYK4|A0A2I4DYK4_9ROSI3.5e-2672.53uncharacterized protein LOC108984653 isoform X2 OS=Juglans regia OX=51240 GN=LOC... [more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR031851DUF4750
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Carg09233-RACarg09233-RAmRNA


Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR031851Protein of unknown function DUF4750PFAMPF15938DUF4750coord: 18..70
e-value: 4.9E-25
score: 86.9
NoneNo IPR availablePANTHERPTHR37192FAMILY NOT NAMEDcoord: 12..91