ClCG08G010860 (gene) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG08G010860
Type	gene
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr08 : 23588551 .. 23589823 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCTCAATTGGGCTTCAACCGACCATCAGCCGTCAAACCCGGTATCTTGAGCCAAGAAAAAGAAAGGGTAGAGCACCCGACGGGGATTGATTGCGTGGCTGACTTCTTGTGCAACCGAGCTCTTCTAATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTGGAGTATCCTCTTTCTCAGTGGGATTATCTCGATCTATTCATACTACGCCCGATCCTTGCAGTTGTGTTCACTTTCTCCTTGATTTCTCTCGGTATTTTGTTCTTCTTTCCTATGATTATTTTGTGTAATTCCTGTATTTCTAATGTCTATTTCTGCTTAGGTTTTTCAATTTTGAAATCCGATTTCTATTTCTGTAGTATTTATTCAATCCTGCGTTGCATTGTTAATTGGTATGGTTGCGTAGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCGTCAAGCCGAAGCCTCCGACGCGCCGGTTATCGAAGTTTTATGATAGTCTGAATTCCCAAACTTCAGCTTCTGGCTGGTTAGTTCTTTTTGTTATACCTGCTATTTGTTAGCTAGAATTATCTGGAACTTGTAGCTAGGGTTTAACCGTTGAATGGGAATTGACAAATGTAGAAAGATAAGCATTATATTCGTCTTGTCTTGTTATTATACTTTTCTTCCATGTGAAATCTCCTATCAGAAACTCGGTCACCTTGTAACTTATACTTAATTACATGGAAATGGAAAGAAAGTACAAAGTTCAACACCACTCATTTAGAGTCGCAATCTTGGTTTCTTTTTCAGATGCTGGAAGAATCTTCTTGTCGTGTATTTATGAGCTTGAGATGGTATATATAATATAGATGTTTGTGTGTCCTGTTTCATGCAACACAGAGTATAAAAGGGTAAATCATGATATTATTATAATTTTCTTTGAGAACTTATCTCCTTCCCACGTTCTTAGTGTTTTTATCGCCTACCCATGTTTCTGCATCGCGGGCACAAATCTGAGCATGTATACTGTGTTTCTTTGTTAAATGATTTCAAATTTTCAAGTATACTGCTCTTGTGTTCTCAATATTTATATATCCAGATTAGCCTTTAGTCTATATGATTACCGGAAGAAGTATTCGACAACTTTATTTACGAAGGATGGAATTTTGAACTCGTCTCTTACAATCCATCTTATAACCAATCTCGGTCTTGAAATGAACGAATCATCTTCCTTCCACTTGCCACATCTTGCAGTCCACC

mRNA sequence

TCTCAATTGGGCTTCAACCGACCATCAGCCGTCAAACCCGGTATCTTGAGCCAAGAAAAAGAAAGGGTAGAGCACCCGACGGGGATTGATTGCGTGGCTGACTTCTTGTGCAACCGAGCTCTTCTAATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTGGAGTATCCTCTTTCTCAGTGGGATTATCTCGATCTATTCATACTACGCCCGATCCTTGCAGTTGTGTTCACTTTCTCCTTGATTTCTCTCGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCGTCAAGCCGAAGCCTCCGACGCGCCGGTTATCGAAGTTTTATGATAGTCTGAATTCCCAAACTTCAGCTTCTGGCTGGTTAGTTCTTTTTGTTATACCTGCTATTTGTTAGCTAGAATTATCTGGAACTTGTAGCTAGGGTTTAACCGTTGAATGGGAATTGACAAATGTAGAAAGATAAGCATTATATTCGTCTTGTCTTGTTATTATACTTTTCTTCCATGTGAAATCTCCTATCAGAAACTCGGTCACCTTGTAACTTATACTTAATTACATGGAAATGGAAAGAAAGTACAAAGTTCAACACCACTCATTTAGAGTCGCAATCTTGGTTTCTTTTTCAGATGCTGGAAGAATCTTCTTGTCGTGTATTTATGAGCTTGAGATGGTATATATAATATAGATGTTTGTGTGTCCTGTTTCATGCAACACAGAGTATAAAAGGGTAAATCATGATATTATTATAATTTTCTTTGAGAACTTATCTCCTTCCCACGTTCTTAGTGTTTTTATCGCCTACCCATGTTTCTGCATCGCGGGCACAAATCTGAGCATGTATACTGTGTTTCTTTGTTAAATGATTTCAAATTTTCAAGTATACTGCTCTTGTGTTCTCAATATTTATATATCCAGATTAGCCTTTAGTCTATATGATTACCGGAAGAAGTATTCGACAACTTTATTTACGAAGGATGGAATTTTGAACTCGTCTCTTACAATCCATCTTATAACCAATCTCGGTCTTGAAATGAACGAATCATCTTCCTTCCACTTGCCACATCTTGCAGTCCACC

Coding sequence (CDS)

TCTCAATTGGGCTTCAACCGACCATCAGCCGTCAAACCCGGTATCTTGAGCCAAGAAAAAGAAAGGGTAGAGCACCCGACGGGGATTGATTGCGTGGCTGACTTCTTGTGCAACCGAGCTCTTCTAATGGAGTCGTCGTCTTCCTCGTTTTCATCTTTGGAGTATCCTCTTTCTCAGTGGGATTATCTCGATCTATTCATACTACGCCCGATCCTTGCAGTTGTGTTCACTTTCTCCTTGATTTCTCTCGGTTGGTTTTTGGCGTGGAAGCTCGTTCTTGTTCACGTCCCTCTGGTGCAAGAAATTTTTGGTTTGCGTAAGAAACCCGTCAAGCCGAAGCCTCCGACGCGCCGGTTATCGAAGTTTTATGATAGTCTGAATTCCCAAACTTCAGCTTCTGGCTGGTTAGTTCTTTTTGTTATACCTGCTATTTGTTAG

Protein sequence

SQLGFNRPSAVKPGILSQEKERVEHPTGIDCVADFLCNRALLMESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEIFGLRKKPVKPKPPTRRLSKFYDSLNSQTSASGWLVLFVIPAIC

Homology

[Close]

BLAST of ClCG08G010860 vs. TrEMBL
Match: A0A0A0KH75_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399720 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 1.8e-39
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 43  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSFSS EY LS WDYL+L+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFSSFEYSLSHWDYLNLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSASG 135
           FGLRKKP K KPPTRRLSKFYDSLNSQTSASG
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of ClCG08G010860 vs. TrEMBL
Match: A0A061FGG1_THECC (Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-27
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 43  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSS SS    LS W+YL+L ++RPI+A+ F  S I L W+LAWKLVLVHVPLVQEI
Sbjct: 29  MESSSSSTSSNF--LSFWNYLNLLLVRPIIAIFFVLSFIFLWWWLAWKLVLVHVPLVQEI 88

Query: 103 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSAS 134
           FGLRKKPVKPKPPTRRLS++Y+S+N+Q+S+S
Sbjct: 89  FGLRKKPVKPKPPTRRLSRYYNSINAQSSSS 117

[Close]

BLAST of ClCG08G010860 vs. TrEMBL
Match: A0A061FHH4_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-27
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 43  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSS SS    LS W+YL+L ++RPI+A+ F  S I L W+LAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSTSSNF--LSFWNYLNLLLVRPIIAIFFVLSFIFLWWWLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSAS 134
           FGLRKKPVKPKPPTRRLS++Y+S+N+Q+S+S
Sbjct: 61  FGLRKKPVKPKPPTRRLSRYYNSINAQSSSS 89

[Close]

BLAST of ClCG08G010860 vs. TrEMBL
Match: A0A061FNP2_THECC (Uncharacterized protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1)

HSP 1 Score: 128.3 bits (321), Expect = 7.8e-27
Identity = 64/91 (70.33%), Postives = 78/91 (85.71%), Query Frame = 1


Query: 43  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSS SS    LS W+YL+L ++RPI+A+ F  S I L W+LAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSTSSNF--LSFWNYLNLLLVRPIIAIFFVLSFIFLWWWLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSAS 134
           FGLRKKPVKPKPPTRRLS++Y+S+N+Q+S+S
Sbjct: 61  FGLRKKPVKPKPPTRRLSRYYNSINAQSSSS 89

[Close]

BLAST of ClCG08G010860 vs. TrEMBL
Match: A0A0D2QMB7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_009G241700 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 1.3e-26
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = 1


Query: 43  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSS +SL + LS W+YL+  + RP+LAV+F  S I L W LAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSS-TSLNF-LSYWNYLNFLLFRPVLAVLFVLSFIILWWLLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSAS 134
           FGLRKKPVKPKPPTRRLS++Y+S+NS +S S
Sbjct: 61  FGLRKKPVKPKPPTRRLSRYYNSINSHSSTS 89

[Close]

BLAST of ClCG08G010860 vs. TAIR10
Match: AT1G36380.1 (AT1G36380.1 unknown protein)

HSP 1 Score: 89.4 bits (220), Expect = 2.0e-18
Identity = 48/88 (54.55%), Postives = 58/88 (65.91%), Query Frame = 1


Query: 43  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESS S   +L +          F++RP+LA+ F    I+L WFLAWKLVL HVPLVQEI
Sbjct: 1   MESSPSFLDNLFF---------FFLIRPLLAISFVICFIALWWFLAWKLVLSHVPLVQEI 60

Query: 103 FGLRKKPVKPKPPTR-RLSKFYDSLNSQ 130
           FGLRKK   PKP +R R++KFY S++SQ
Sbjct: 61  FGLRKKTFIPKPESRGRIAKFYKSISSQ 79

[Close]

BLAST of ClCG08G010860 vs. NCBI nr
Match: gi|659089174|ref|XP_008445365.1| (PREDICTED: uncharacterized protein LOC103488423 isoform X1 [Cucumis melo])

HSP 1 Score: 175.6 bits (444), Expect = 6.1e-41
Identity = 84/97 (86.60%), Postives = 89/97 (91.75%), Query Frame = 1


Query: 43  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF S EY LS WDYLDL+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSASGWLVLF 140
           FGLRKKP K KPPTRRLSKFYDSLNSQTSASGW  ++
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASGWFCVY 97

[Close]

BLAST of ClCG08G010860 vs. NCBI nr
Match: gi|659089177|ref|XP_008445367.1| (PREDICTED: uncharacterized protein LOC103488423 isoform X2 [Cucumis melo])

HSP 1 Score: 174.5 bits (441), Expect = 1.4e-40
Identity = 84/93 (90.32%), Postives = 87/93 (93.55%), Query Frame = 1


Query: 43  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF S EY LS WDYLDL+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSASGW 136
           FGLRKKP K KPPTRRLSKFYDSLNSQTSASGW
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASGW 93

[Close]

BLAST of ClCG08G010860 vs. NCBI nr
Match: gi|778715738|ref|XP_011657443.1| (PREDICTED: uncharacterized protein LOC101215134 isoform X1 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-39
Identity = 83/92 (90.22%), Postives = 87/92 (94.57%), Query Frame = 1


Query: 43  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSFSS EY LS WDYL+L+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFSSFEYSLSHWDYLNLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSASG 135
           FGLRKKP K KPPTRRLSKFYDSLNSQTSASG
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of ClCG08G010860 vs. NCBI nr
Match: gi|659089179|ref|XP_008445368.1| (PREDICTED: uncharacterized protein LOC103488423 isoform X3 [Cucumis melo])

HSP 1 Score: 170.2 bits (430), Expect = 2.6e-39
Identity = 83/92 (90.22%), Postives = 86/92 (93.48%), Query Frame = 1


Query: 43  MESSSSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEI 102
           MESSSSSF S EY LS WDYLDL+ILRPILA++FTFSLISLGWFLAWKLVLVHVPLVQEI
Sbjct: 1   MESSSSSFPSFEYSLSHWDYLDLYILRPILAILFTFSLISLGWFLAWKLVLVHVPLVQEI 60

Query: 103 FGLRKKPVKPKPPTRRLSKFYDSLNSQTSASG 135
           FGLRKKP K KPPTRRLSKFYDSLNSQTSASG
Sbjct: 61  FGLRKKPAKSKPPTRRLSKFYDSLNSQTSASG 92

[Close]

BLAST of ClCG08G010860 vs. NCBI nr
Match: gi|1009136541|ref|XP_015885581.1| (PREDICTED: uncharacterized protein LOC107420988 [Ziziphus jujuba])

HSP 1 Score: 129.4 bits (324), Expect = 5.0e-27
Identity = 65/88 (73.86%), Postives = 73/88 (82.95%), Query Frame = 1


Query: 47  SSSFSSLEYPLSQWDYLDLFILRPILAVVFTFSLISLGWFLAWKLVLVHVPLVQEIFGLR 106
           SSS SS E   S WDYL LF+LRP+ AV+F F LISLGW LAWKLVLVHVPLVQEIFGLR
Sbjct: 3   SSSLSS-EASFSPWDYLSLFLLRPVSAVLFVFLLISLGWLLAWKLVLVHVPLVQEIFGLR 62

Query: 107 KKPVKPKPPTRRLSKFYDSLNSQTSASG 135
           KKPVKPKP TRRLSK Y +++S+ +ASG
Sbjct: 63  KKPVKPKPLTRRLSKIYSNIDSRKNASG 89

The following BLAST results are available for this feature:

BLAST of ClCG08G010860 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KH75_CUCSA	1.8e-39	90.22	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G399720 PE=4 SV=1	[more]
A0A061FGG1_THECC	7.8e-27	70.33	Uncharacterized protein isoform 2 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE...	[more]
A0A061FHH4_THECC	7.8e-27	70.33	Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_035000 PE=4 SV=1	[more]
A0A061FNP2_THECC	7.8e-27	70.33	Uncharacterized protein isoform 5 (Fragment) OS=Theobroma cacao GN=TCM_035000 PE...	[more]
A0A0D2QMB7_GOSRA	1.3e-26	70.33	Uncharacterized protein OS=Gossypium raimondii GN=B456_009G241700 PE=4 SV=1	[more]

BLAST of ClCG08G010860 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G36380.1	2.0e-18	54.55	unknown protein	[more]

BLAST of ClCG08G010860 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659089174\|ref\|XP_008445365.1\|	6.1e-41	86.60	PREDICTED: uncharacterized protein LOC103488423 isoform X1 [Cucumis melo]	[more]
gi\|659089177\|ref\|XP_008445367.1\|	1.4e-40	90.32	PREDICTED: uncharacterized protein LOC103488423 isoform X2 [Cucumis melo]	[more]
gi\|778715738\|ref\|XP_011657443.1\|	2.6e-39	90.22	PREDICTED: uncharacterized protein LOC101215134 isoform X1 [Cucumis sativus]	[more]
gi\|659089179\|ref\|XP_008445368.1\|	2.6e-39	90.22	PREDICTED: uncharacterized protein LOC103488423 isoform X3 [Cucumis melo]	[more]
gi\|1009136541\|ref\|XP_015885581.1\|	5.0e-27	73.86	PREDICTED: uncharacterized protein LOC107420988 [Ziziphus jujuba]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006661	phosphatidylinositol biosynthetic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0016020	membrane
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
ClCG08G010860.1	ClCG08G010860.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37192	FAMILY NOT NAMED	coord: 46..135 score: 1.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
ClCG08G010860	Csa6G399720	Cucumber (Chinese Long) v2	cuwcgB510
ClCG08G010860	Cla022071	Watermelon (97103) v1	wcgwmB400
ClCG08G010860	Cla97C08G153760	Watermelon (97103) v2	wcgwmbB336
ClCG08G010860	Bhi04G000597	Wax gourd	wcgwgoB637
ClCG08G010860	CSPI06G20640	Wild cucumber (PI 183967)	cpiwcgB537
ClCG08G010860	Cucsa.005000	Cucumber (Gy14) v1	cgywcgB057
ClCG08G010860	CmaCh05G004770	Cucurbita maxima (Rimu)	cmawcgB709
ClCG08G010860	CmoCh05G005000	Cucurbita moschata (Rifu)	cmowcgB713
ClCG08G010860	Lsi08G009400	Bottle gourd (USVL1VR-Ls)	lsiwcgB438
ClCG08G010860	CsGy6G020030	Cucumber (Gy14) v2	cgybwcgB469
ClCG08G010860	MELO3C030294.2	Melon (DHL92) v3.6.1	medwcgB289
ClCG08G010860	Carg09233	Silver-seed gourd	carwcgB0138
ClCG08G010860	CsaV3_6G035660	Cucumber (Chinese Long) v3	cucwcgB530

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
ClCG08G010860	Cucurbita maxima (Rimu)	cmawcgB170
ClCG08G010860	Cucurbita moschata (Rifu)	cmowcgB162
ClCG08G010860	Melon (DHL92) v3.5.1	mewcgB296
ClCG08G010860	Cucurbita pepo (Zucchini)	cpewcgB122
ClCG08G010860	Cucurbita pepo (Zucchini)	cpewcgB749
ClCG08G010860	Silver-seed gourd	carwcgB0633
ClCG08G010860	Wax gourd	wcgwgoB614