Cla013114 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla013114
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Os06g0704200 protein (Fragment) (AHRD V1 -- C7J4C3_ORYSJ)
Location	Chr5 : 11058925 .. 11059344 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATAAGCCATGTAAAAGGTCCATTTCCACAAATCCCACCACCCCTGCTACCACATCCAAATTCTAACACCCCCGTCCTCCGATTTACCGCCCCCCTCGCGCTAACCACAGCCACTTGCCGGATCGCAACCACTGCGGCTGCGATTCTAGCAGCTGCAGCCGTGATTGCTTCGCCGGCGCCGTCTGCCGCAACCGAGACCAGCACTAGCATATCGGAACAACAAGAAGAAAGTACTACGCTGTCCAACATTCCACAAACGCTTTCCGGCGAGTGCGCGCAGCCGAGCGACTGCAAGAAGGCTAGAATTCAACGGCCGAAGTCGAGGAAGGCGGAATCGTGCACGATCAAGTGCGTGGGAACTTGCATTCGAGGCGGCGATGGATCTCCCGGAGAAGGCCCTCTGAACATCAGGAGGTAA

mRNA sequence

ATGATAAGCCATGTAAAAGGTCCATTTCCACAAATCCCACCACCCCTGCTACCACATCCAAATTCTAACACCCCCGTCCTCCGATTTACCGCCCCCCTCGCGCTAACCACAGCCACTTGCCGGATCGCAACCACTGCGGCTGCGATTCTAGCAGCTGCAGCCGTGATTGCTTCGCCGGCGCCGTCTGCCGCAACCGAGACCAGCACTAGCATATCGGAACAACAAGAAGAAAGTACTACGCTGTCCAACATTCCACAAACGCTTTCCGGCGAGTGCGCGCAGCCGAGCGACTGCAAGAAGGCTAGAATTCAACGGCCGAAGTCGAGGAAGGCGGAATCGTGCACGATCAAGTGCGTGGGAACTTGCATTCGAGGCGGCGATGGATCTCCCGGAGAAGGCCCTCTGAACATCAGGAGGTAA

Coding sequence (CDS)

ATGATAAGCCATGTAAAAGGTCCATTTCCACAAATCCCACCACCCCTGCTACCACATCCAAATTCTAACACCCCCGTCCTCCGATTTACCGCCCCCCTCGCGCTAACCACAGCCACTTGCCGGATCGCAACCACTGCGGCTGCGATTCTAGCAGCTGCAGCCGTGATTGCTTCGCCGGCGCCGTCTGCCGCAACCGAGACCAGCACTAGCATATCGGAACAACAAGAAGAAAGTACTACGCTGTCCAACATTCCACAAACGCTTTCCGGCGAGTGCGCGCAGCCGAGCGACTGCAAGAAGGCTAGAATTCAACGGCCGAAGTCGAGGAAGGCGGAATCGTGCACGATCAAGTGCGTGGGAACTTGCATTCGAGGCGGCGATGGATCTCCCGGAGAAGGCCCTCTGAACATCAGGAGGTAA

Protein sequence

MISHVKGPFPQIPPPLLPHPNSNTPVLRFTAPLALTTATCRIATTAAAILAAAAVIASPAPSAATETSTSISEQQEESTTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR

Homology

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BLAST of Cla013114 vs. TrEMBL
Match: A0A0A0LA46_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198460 PE=4 SV=1)

HSP 1 Score: 248.8 bits (634), Expect = 3.8e-63
Identity = 124/139 (89.21%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MISHVKGPFPQIPPPLLPHPNSNTPVLRFTAPLALTTATCRIATTAAAILAAAAVIASPA 60
           M++HVKGP P  PP L PHPN NT VLRFTAPLALTT+TCRIATTAAAILAAAAVIASP 
Sbjct: 1   MLTHVKGPLPPTPPTL-PHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPP 60

Query: 61  PSAATETSTSISEQQEESTTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVG 120
           PSAATETS ++SEQQEES+TLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVG
Sbjct: 61  PSAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVG 120

Query: 121 TCIRGGDGSPGEGPLNIRR 140
           TCIRGGDGSPGEGPLNIRR
Sbjct: 121 TCIRGGDGSPGEGPLNIRR 138

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BLAST of Cla013114 vs. TrEMBL
Match: U5G8N3_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15070g PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = 1


Query: 35  LTTATCRIATTAAAILAAAAVIASPAPSAATETSTSISEQQEESTTLSNIPQTLSG-ECA 94
           +T  + R + T  ++ AA AV+AS A  A+ E      +QQ E+ TLSNIPQTLSG ECA
Sbjct: 38  ITRGSSRFSMTITSLFAAGAVLASAAAGASIEAPQQQQQQQAETETLSNIPQTLSGGECA 97

Query: 95  Q--PSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 140
              P DCKKARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGPLN+RR
Sbjct: 98  SVSPKDCKKARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPLNVRR 145

[Close]

BLAST of Cla013114 vs. TrEMBL
Match: U5GB13_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15070g PE=4 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.8e-29
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = 1


Query: 35  LTTATCRIATTAAAILAAAAVIASPAPSAATETSTSISEQQEESTTLSNIPQTLSG-ECA 94
           +T  + R + T  ++ AA AV+AS A  A+ E      +QQ E+ TLSNIPQTLSG ECA
Sbjct: 38  ITRGSSRFSMTITSLFAAGAVLASAAAGASIEAPQQQQQQQAETETLSNIPQTLSGGECA 97

Query: 95  Q--PSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 140
              P DCKKARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGPLN+RR
Sbjct: 98  SVSPKDCKKARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPLNVRR 145

[Close]

BLAST of Cla013114 vs. TrEMBL
Match: V4SMX7_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029418mg PE=4 SV=1)

HSP 1 Score: 132.9 bits (333), Expect = 3.0e-28
Identity = 66/100 (66.00%), Postives = 77/100 (77.00%), Query Frame = 1


Query: 40  CRIATTAAAILAAAAVIASPAPSAATETSTSISEQQEESTTLSNIPQTLSGECAQPSDCK 99
           C IAT+A+ + AAA VIA+ A       S  I   Q+++ TLSNIPQ LSG+CA  +DC+
Sbjct: 40  CSIATSASGLFAAAVVIAAAA-------SDGIGTPQDQAETLSNIPQELSGDCASGNDCR 99

Query: 100 KARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 140
           K RIQRPKSRKAESCTIKCV TCIRGGDGSPGEGPLN+RR
Sbjct: 100 KPRIQRPKSRKAESCTIKCVTTCIRGGDGSPGEGPLNVRR 132

[Close]

BLAST of Cla013114 vs. TrEMBL
Match: A0A067FV54_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031102mg PE=4 SV=1)

HSP 1 Score: 131.0 bits (328), Expect = 1.2e-27
Identity = 65/100 (65.00%), Postives = 76/100 (76.00%), Query Frame = 1


Query: 40  CRIATTAAAILAAAAVIASPAPSAATETSTSISEQQEESTTLSNIPQTLSGECAQPSDCK 99
           C IA +A+ + AAA VIA+ A       S  I   Q+++ TLSNIPQ LSG+CA  +DC+
Sbjct: 40  CSIAASASGLFAAAVVIAAAA-------SDGIGTPQDQAETLSNIPQELSGDCASGNDCR 99

Query: 100 KARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 140
           K RIQRPKSRKAESCTIKCV TCIRGGDGSPGEGPLN+RR
Sbjct: 100 KPRIQRPKSRKAESCTIKCVTTCIRGGDGSPGEGPLNVRR 132

[Close]

BLAST of Cla013114 vs. NCBI nr
Match: gi|659112369|ref|XP_008456185.1| (PREDICTED: uncharacterized protein LOC103496200 [Cucumis melo])

HSP 1 Score: 254.6 bits (649), Expect = 1.0e-64
Identity = 127/139 (91.37%), Postives = 132/139 (94.96%), Query Frame = 1


Query: 1   MISHVKGPFPQIPPPLLPHPNSNTPVLRFTAPLALTTATCRIATTAAAILAAAAVIASPA 60
           M+SHVKGPFP IPP L PHPN NT VLRFTAPLALTT+TCRIATTAAAILAAAAVIASP 
Sbjct: 1   MLSHVKGPFPPIPPTL-PHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPL 60

Query: 61  PSAATETSTSISEQQEESTTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVG 120
           PSAATETS ++SEQQEES+TLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVG
Sbjct: 61  PSAATETSATVSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVG 120

Query: 121 TCIRGGDGSPGEGPLNIRR 140
           TCIRGGDGSPGEGPLNIRR
Sbjct: 121 TCIRGGDGSPGEGPLNIRR 138

[Close]

BLAST of Cla013114 vs. NCBI nr
Match: gi|449445931|ref|XP_004140725.1| (PREDICTED: uncharacterized protein LOC101203967 [Cucumis sativus])

HSP 1 Score: 248.8 bits (634), Expect = 5.5e-63
Identity = 124/139 (89.21%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MISHVKGPFPQIPPPLLPHPNSNTPVLRFTAPLALTTATCRIATTAAAILAAAAVIASPA 60
           M++HVKGP P  PP L PHPN NT VLRFTAPLALTT+TCRIATTAAAILAAAAVIASP 
Sbjct: 1   MLTHVKGPLPPTPPTL-PHPNWNTTVLRFTAPLALTTSTCRIATTAAAILAAAAVIASPP 60

Query: 61  PSAATETSTSISEQQEESTTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVG 120
           PSAATETS ++SEQQEES+TLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVG
Sbjct: 61  PSAATETSATLSEQQEESSTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVG 120

Query: 121 TCIRGGDGSPGEGPLNIRR 140
           TCIRGGDGSPGEGPLNIRR
Sbjct: 121 TCIRGGDGSPGEGPLNIRR 138

[Close]

BLAST of Cla013114 vs. NCBI nr
Match: gi|645280166|ref|XP_008245063.1| (PREDICTED: uncharacterized protein LOC103343169 [Prunus mume])

HSP 1 Score: 139.0 bits (349), Expect = 6.1e-30
Identity = 72/98 (73.47%), Postives = 77/98 (78.57%), Query Frame = 1


Query: 42  IATTAAAILAAAAVIASPAPSAATETSTSISEQQEESTTLSNIPQTLSGECAQPSDCKKA 101
           I    A +LAAAAVIAS + SAA E+        E S TLSNIPQTLSGECA P+DCKKA
Sbjct: 67  ILLATAGLLAAAAVIASASASAAMESP-------ENSETLSNIPQTLSGECALPTDCKKA 126

Query: 102 RIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 140
           RIQRPKSRKAESCTIKCV TCIRGGDGSPGEGP N+RR
Sbjct: 127 RIQRPKSRKAESCTIKCVTTCIRGGDGSPGEGPFNVRR 157

[Close]

BLAST of Cla013114 vs. NCBI nr
Match: gi|566181417|ref|XP_006380834.1| (hypothetical protein POPTR_0007s15070g [Populus trichocarpa])

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-29
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = 1


Query: 35  LTTATCRIATTAAAILAAAAVIASPAPSAATETSTSISEQQEESTTLSNIPQTLSG-ECA 94
           +T  + R + T  ++ AA AV+AS A  A+ E      +QQ E+ TLSNIPQTLSG ECA
Sbjct: 38  ITRGSSRFSMTITSLFAAGAVLASAAAGASIEAPQQQQQQQAETETLSNIPQTLSGGECA 97

Query: 95  Q--PSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 140
              P DCKKARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGPLN+RR
Sbjct: 98  SVSPKDCKKARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPLNVRR 145

[Close]

BLAST of Cla013114 vs. NCBI nr
Match: gi|566181421|ref|XP_006380835.1| (hypothetical protein POPTR_0007s15070g [Populus trichocarpa])

HSP 1 Score: 136.3 bits (342), Expect = 4.0e-29
Identity = 70/108 (64.81%), Postives = 81/108 (75.00%), Query Frame = 1


Query: 35  LTTATCRIATTAAAILAAAAVIASPAPSAATETSTSISEQQEESTTLSNIPQTLSG-ECA 94
           +T  + R + T  ++ AA AV+AS A  A+ E      +QQ E+ TLSNIPQTLSG ECA
Sbjct: 38  ITRGSSRFSMTITSLFAAGAVLASAAAGASIEAPQQQQQQQAETETLSNIPQTLSGGECA 97

Query: 95  Q--PSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRR 140
              P DCKKARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGPLN+RR
Sbjct: 98  SVSPKDCKKARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPLNVRR 145

The following BLAST results are available for this feature:

BLAST of Cla013114 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LA46_CUCSA	3.8e-63	89.21	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G198460 PE=4 SV=1	[more]
U5G8N3_POPTR	2.8e-29	64.81	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15070g PE=4 SV=1	[more]
U5GB13_POPTR	2.8e-29	64.81	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0007s15070g PE=4 SV=1	[more]
V4SMX7_9ROSI	3.0e-28	66.00	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029418mg PE=4 SV=1	[more]
A0A067FV54_CITSI	1.2e-27	65.00	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031102mg PE=4 SV=1	[more]

BLAST of Cla013114 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112369\|ref\|XP_008456185.1\|	1.0e-64	91.37	PREDICTED: uncharacterized protein LOC103496200 [Cucumis melo]	[more]
gi\|449445931\|ref\|XP_004140725.1\|	5.5e-63	89.21	PREDICTED: uncharacterized protein LOC101203967 [Cucumis sativus]	[more]
gi\|645280166\|ref\|XP_008245063.1\|	6.1e-30	73.47	PREDICTED: uncharacterized protein LOC103343169 [Prunus mume]	[more]
gi\|566181417\|ref\|XP_006380834.1\|	4.0e-29	64.81	hypothetical protein POPTR_0007s15070g [Populus trichocarpa]	[more]
gi\|566181421\|ref\|XP_006380835.1\|	4.0e-29	64.81	hypothetical protein POPTR_0007s15070g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0030154	cell differentiation
biological_process	GO:0009965	leaf morphogenesis
biological_process	GO:0045893	positive regulation of transcription, DNA-templated
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla013114	Cla013114.1	mRNA

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36006	FAMILY NOT NAMED	coord: 41..139 score: 6.5
None	No IPR available	PANTHER	PTHR36006:SF2	SUBFAMILY NOT NAMED	coord: 41..139 score: 6.5

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla013114	Cla97C05G092820	Watermelon (97103) v2	wmwmbB206
Cla013114	Csa3G198460	Cucumber (Chinese Long) v2	cuwmB243
Cla013114	MELO3C019561	Melon (DHL92) v3.5.1	mewmB461
Cla013114	ClCG05G010440	Watermelon (Charleston Gray)	wcgwmB286
Cla013114	CSPI03G17980	Wild cucumber (PI 183967)	cpiwmB242
Cla013114	Cucsa.108770	Cucumber (Gy14) v1	cgywmB153
Cla013114	CmaCh14G008830	Cucurbita maxima (Rimu)	cmawmB243
Cla013114	CmoCh14G009010	Cucurbita moschata (Rifu)	cmowmB232
Cla013114	Lsi05G002560	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla013114	CsGy3G017920	Cucumber (Gy14) v2	cgybwmB229
Cla013114	MELO3C019561.2	Melon (DHL92) v3.6.1	medwmB448
Cla013114	Carg24253	Silver-seed gourd	carwmB0166
Cla013114	CsaV3_3G018050	Cucumber (Chinese Long) v3	cucwmB252

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla013114	Cucurbita moschata (Rifu)	cmowmB427
Cla013114	Cucurbita pepo (Zucchini)	cpewmB568
Cla013114	Cucurbita pepo (Zucchini)	cpewmB614
Cla013114	Silver-seed gourd	carwmB0760
Cla013114	Wax gourd	wgowmB202
Cla013114	Watermelon (97103) v1	wmwmB131
Cla013114	Cucurbita maxima (Rimu)	cmawmB434