Carg24253 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg24253
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Mitochondrial import inner membrane translocase subunit tim-10 isoform 1
Location	Cucurbita_argyrosperma_scaffold_191 : 265249 .. 268250 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTAGACGGAGAATGAGAGAAGTACTGGAATACATCCCGTTAAATAAATGGAGTCGAAGATGAGAATAGAGAAAATTGGTGGGTGTGATAAAAGCAGGGCCAGAAACTAGTTATCCCTTTTCTTCCCATCGTATTATATTCAAGCCATCCATATCAACACGTGGATCAACGCCGATCTTCAAAAAAGCGTTTCAAAAATCAACACACATTATCCAGAAGAAGAGGAAGATGATTCGATTCTCGAAAGCCAGAGCAGAGTAGAGTCAAAATCGAATCCAAAACTTCAGAATGATAAGCCATGTAAAAGGTCCATTTCCACCGATACCAGCCCTAGCGCATCCAAATTGGAACAGCGCCGTCGTCCGATTCACCGCTCCGCTTGCTCTAACCAGAGCCAGTTGCCGGATTGCAACCACTGCGGCGGCGATTTTGGCAGCCGCAGTTGTGATTGTTTCGCCGGCGCCGTCAGCCGCTGTCGAGAGTAGCAGCAACTTATCGGAACAACAAGAAGAAAGTACTACGCTGTCTAACATTCCGCAGACGCTTTCCGGCGAGTGCGCGCAGCCGAGCGACTGTAAGAAGGCGAGAATTCAACGGCCGAAGTCGAGGAAGGCGGAGTCGTGTACGATCAAGTGCGTTGGAACATGCATTCGAGGCGGTGATGGATCTCCCGGAGAAGGCCCTCTGAACATCAGAAGGTAAGTAAAGATTATTGGAAAATGGCTATTGATGAACACACAAATTTGTAGGACATTTAAGCCGAATTCTTAGTGTTTGATCTCTGGAATTTCTTCGTTTATTGTTTACAGACCGATTGTTGTTTTCAAGCAAGGTTTTCGAAGTCGTCAATACTGGTACGTATACCTCTTTGAATCTCAAAGTAATTTTAATTTTATTCCATTTTTGTTTGAGAGAAAAAAAGTCAGTAAATGAAACATTTGAAACCAAGTTCAAAATTGAAGAACAAAGGGTTACCAATTGGGGATTACCACCAACTAGAGGCCAGTGATCAACGACCATTTCAGGTAATGGTCAGTTGTTGCTGGACTCGATTTCTTGCCACCGGTCCTGGACACTAGTCATTGTTCGCTCGGTCCCAATCATTGTTCATCAGCCCCCAATCTCAATCAATGTTCTCCTATCACCAGCCATCGATCACCAATCCCCAGTCTCAGTCGATGGTCTTTGATCCCAGATGCTACTTGTTGGTCCCTAATCTCAATTGGCGACCCTTGATCAGTCATTAGTCAGTGATCCTCAACCTTGTTGCCACGATTGACAATTGGGTTCGATAATTATAACGACCCAGATCTACTGCTAGCAGATATTGTCCTTTCGAGCTTCCCCTCAAGGCTTTAAAACACGTCTACTAGGGGAAGGTTTCCACACACTTGTAAAGGTATTTGTTCTCCCAACCAGGGACACTCGGAATCCCACTCGAGGCCAGCGATGTCGCTAGCACTCTTCCTTCTTTCAATCGATGTGTGGACGCCCCTAAATCCACCCCCTTTGAGGGTCCACGTCCTTATTGGCACACCGCCTCGTTCTACCGAGTTCGGGTAACAGCGAGAAGCTTGACACATCGTCCGGTGTCTGGCTCTGATACCATTTGTAACAACCCAGATCAGAGTCGGACACCAGACGATGTGCTAGTCTTCTCGCTGTTCCCCAAAGGGGGTGGATTTGGGTTGAGGAGAAAGAACGAGTGGCGCTAGAGGGAGGTAGATTGTGTGATGGTCTGGGATGGAGCAAAACACCCTTTACAAGGGAGTGAAAACCTTTTCCTAGCGGTTGGGGAGGAGAACAAAACACCCTTTACAAGGGAGTGGAAACCTTTTCCTAGCATCTGGGCCGTTACAGTAATTGTTAACCACCGACTACTGTCGGTGACCAACTCTAATCACCACTAAAATTTGAAGTTATTAGTTCGTATCTCGTGTTTGTGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATTTGAAGTTATTAGTTCGTATCTCGTGTTTGTGTTAGGAATCACGACTCTCCACAATGGTATGATATTGTCCACTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCCAAAAGGGCTCATACCAATGGAGATAGTATTCGCCCACTTATAAACCGTGATCTTTCACTAAATTAACCAATGTGGTGACACTCCCAATCCCAATATCTCAGACACCTCCTCGAACAAAGCACACTATAAGCCTAACCCTGAGGCTTATGGCGCTCTCGATATAGCCTCCCCTTAATTGAGGCTCGACTCCTTTCTCTGGAGCCCTCGAAACAAAGTACACCTTTGTTCGACACTTTAGTCACTTTGACTACACCTTCGAGCTCGCCATTCTTTGTGTTCGATATTTGAGGATTCATTGGCATGGTTAAGTTTAAGGGCATGGCTCTTGGAATACCATGTTAGGGATCACGACTCTCCACAATGGGTGATGATATGTCACCTTTGAGCATAAGCTCTCATGGCTTTGCTTTGGGCTTCCCAAAAGGCCTCATACCAATGGAGATAGTATTCCCCACTTATAAACCCATGATCTTCCACTAAATTAACCAATGTGGGACACTCCCAATCCCAATAATCCTCAACAGTTTGCATATATTAAGTTGTCAACGAAGTCATGCCTGTTGGATGATGAAAGTCTCACATCGGCTAATTTAGAGAATGATCATGGGTTTATAATCGAATAGCGTTCTCTCTCTATTGATAGGAGACCTTTTGAAGAAGTCTAAATTAAAGTCACGAGAGCTTATGCTCAAAGTGGTCAATATCTTACCATTATCTTACCATTATGGAGAGTCCTTAACATGCCTAACTTTAAAACCAATTTTCAAACCTTCTTAATAATTGCTTAAGTTTTGGGGATTTTGCAGTTTGGTGGAGTGTTCAGATATCTGCAACTTGATCGGCGATGGTGATGATGGACCTTGACTACACTTTTTTTTTTTTTTTTTTTTTTT

mRNA sequence

ATTTAGACGGAGAATGAGAGAAGTACTGGAATACATCCCGTTAAATAAATGGAGTCGAAGATGAGAATAGAGAAAATTGGTGGGTGTGATAAAAGCAGGGCCAGAAACTAGTTATCCCTTTTCTTCCCATCGTATTATATTCAAGCCATCCATATCAACACGTGGATCAACGCCGATCTTCAAAAAAGCGTTTCAAAAATCAACACACATTATCCAGAAGAAGAGGAAGATGATTCGATTCTCGAAAGCCAGAGCAGAGTAGAGTCAAAATCGAATCCAAAACTTCAGAATGATAAGCCATGTAAAAGGTCCATTTCCACCGATACCAGCCCTAGCGCATCCAAATTGGAACAGCGCCGTCGTCCGATTCACCGCTCCGCTTGCTCTAACCAGAGCCAGTTGCCGGATTGCAACCACTGCGGCGGCGATTTTGGCAGCCGCAGTTGTGATTGTTTCGCCGGCGCCGTCAGCCGCTGTCGAGAGTAGCAGCAACTTATCGGAACAACAAGAAGAAAGTACTACGCTGTCTAACATTCCGCAGACGCTTTCCGGCGAGTGCGCGCAGCCGAGCGACTGTAAGAAGGCGAGAATTCAACGGCCGAAGTCGAGGAAGGCGGAGTCGTGTACGATCAAGTGCGTTGGAACATGCATTCGAGGCGGTGATGGATCTCCCGGAGAAGGCCCTCTGAACATCAGAAGACCGATTGTTGTTTTCAAGCAAGGTTTTCGAAGTCGTCAATACTGTTTGGTGGAGTGTTCAGATATCTGCAACTTGATCGGCGATGGTGATGATGGACCTTGACTACACTTTTTTTTTTTTTTTTTTTTTTT

Coding sequence (CDS)

ATGATAAGCCATGTAAAAGGTCCATTTCCACCGATACCAGCCCTAGCGCATCCAAATTGGAACAGCGCCGTCGTCCGATTCACCGCTCCGCTTGCTCTAACCAGAGCCAGTTGCCGGATTGCAACCACTGCGGCGGCGATTTTGGCAGCCGCAGTTGTGATTGTTTCGCCGGCGCCGTCAGCCGCTGTCGAGAGTAGCAGCAACTTATCGGAACAACAAGAAGAAAGTACTACGCTGTCTAACATTCCGCAGACGCTTTCCGGCGAGTGCGCGCAGCCGAGCGACTGTAAGAAGGCGAGAATTCAACGGCCGAAGTCGAGGAAGGCGGAGTCGTGTACGATCAAGTGCGTTGGAACATGCATTCGAGGCGGTGATGGATCTCCCGGAGAAGGCCCTCTGAACATCAGAAGACCGATTGTTGTTTTCAAGCAAGGTTTTCGAAGTCGTCAATACTGTTTGGTGGAGTGTTCAGATATCTGCAACTTGATCGGCGATGGTGATGATGGACCTTGA

Protein sequence

MISHVKGPFPPIPALAHPNWNSAVVRFTAPLALTRASCRIATTAAAILAAAVVIVSPAPSAAVESSSNLSEQQEESTTLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP

Homology

[Close]

BLAST of Carg24253 vs. NCBI nr
Match: XP_022934222.1 (uncharacterized protein LOC111441457 isoform X2 [Cucurbita moschata])

HSP 1 Score: 267.3 bits (682), Expect = 3.5e-68
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MISHVKGPFPPIPALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXXX 60
           MISHVKGPFPPIPALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MISHVKGPFPPIPALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTC 120
           XXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTC 120

Query: 121 IRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           IRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP
Sbjct: 121 IRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 170

[Close]

BLAST of Carg24253 vs. NCBI nr
Match: XP_023526623.1 (uncharacterized protein LOC111790064 isoform X2 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 267.3 bits (682), Expect = 3.5e-68
Identity = 170/170 (100.00%), Postives = 170/170 (100.00%), Query Frame = 0


Query: 1   MISHVKGPFPPIPALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXXX 60
           MISHVKGPFPPIPALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXXX
Sbjct: 1   MISHVKGPFPPIPALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTC 120
           XXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTC 120

Query: 121 IRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           IRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP
Sbjct: 121 IRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 170

[Close]

BLAST of Carg24253 vs. NCBI nr
Match: XP_022983921.1 (uncharacterized protein LOC111482398 isoform X2 [Cucurbita maxima])

HSP 1 Score: 265.4 bits (677), Expect = 1.3e-67
Identity = 169/170 (99.41%), Postives = 169/170 (99.41%), Query Frame = 0


Query: 1   MISHVKGPFPPIPALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXXX 60
           MISHVKGPFPPIPALAHPNWNSAVVRFTAPLALTRASCRI XXXXXXXXXXXXXXXXXXX
Sbjct: 1   MISHVKGPFPPIPALAHPNWNSAVVRFTAPLALTRASCRIXXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTC 120
           XXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTC
Sbjct: 61  XXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTC 120

Query: 121 IRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           IRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP
Sbjct: 121 IRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 170

[Close]

BLAST of Carg24253 vs. NCBI nr
Match: XP_008456185.1 (PREDICTED: uncharacterized protein LOC103496200 [Cucumis melo])

HSP 1 Score: 250.0 bits (637), Expect = 5.8e-63
Identity = 160/171 (93.57%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MISHVKGPFPPI-PALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXX 60
           M+SHVKGPFPPI P L HPNWN+ V+RFTAPLALT ++CRIAXXXXXXXXXXXXXXXXXX
Sbjct: 1   MLSHVKGPFPPIPPTLPHPNWNTTVLRFTAPLALTTSTCRIAXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120
           XXXXXXXXXXXXXXXXXXX SNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120

Query: 121 CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP
Sbjct: 121 CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171

[Close]

BLAST of Carg24253 vs. NCBI nr
Match: XP_004140725.1 (PREDICTED: uncharacterized protein LOC101203967 [Cucumis sativus] >KGN57482.1 hypothetical protein Csa_3G198460 [Cucumis sativus])

HSP 1 Score: 242.7 bits (618), Expect = 9.3e-61
Identity = 156/171 (91.23%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MISHVKGPFPPI-PALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXX 60
           M++HVKGP PP  P L HPNWN+ V+RFTAPLALT ++CRI XXXXXXXXXXXXXXXXXX
Sbjct: 1   MLTHVKGPLPPTPPTLPHPNWNTTVLRFTAPLALTTSTCRIXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120
           XXXXXXXXXXXXXXXXXXX SNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120

Query: 121 CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP
Sbjct: 121 CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171

[Close]

BLAST of Carg24253 vs. TAIR10
Match: AT1G78995.1 (unknown protein)

HSP 1 Score: 150.2 bits (378), Expect = 1.1e-36
Identity = 71/91 (78.02%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 80  SNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRRPI 139
           SN+PQTLSGE     DCKK RIQRPKS+ AE CT+KCV TCIR GD   GEGP+NIRRP+
Sbjct: 77  SNVPQTLSGE-----DCKKQRIQRPKSKNAEKCTVKCVNTCIRSGD---GEGPINIRRPL 136

Query: 140 VVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           VVFKQGFRSR YCLVECSDICNLIGDGD GP
Sbjct: 137 VVFKQGFRSRNYCLVECSDICNLIGDGDYGP 159

[Close]

BLAST of Carg24253 vs. TrEMBL
Match: tr|A0A1S3C289|A0A1S3C289_CUCME (uncharacterized protein LOC103496200 OS=Cucumis melo OX=3656 GN=LOC103496200 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 3.9e-63
Identity = 160/171 (93.57%), Postives = 165/171 (96.49%), Query Frame = 0


Query: 1   MISHVKGPFPPI-PALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXX 60
           M+SHVKGPFPPI P L HPNWN+ V+RFTAPLALT ++CRIAXXXXXXXXXXXXXXXXXX
Sbjct: 1   MLSHVKGPFPPIPPTLPHPNWNTTVLRFTAPLALTTSTCRIAXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120
           XXXXXXXXXXXXXXXXXXX SNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120

Query: 121 CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP
Sbjct: 121 CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171

[Close]

BLAST of Carg24253 vs. TrEMBL
Match: tr|A0A0A0LA46|A0A0A0LA46_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198460 PE=4 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 6.2e-61
Identity = 156/171 (91.23%), Postives = 162/171 (94.74%), Query Frame = 0


Query: 1   MISHVKGPFPPI-PALAHPNWNSAVVRFTAPLALTRASCRIAXXXXXXXXXXXXXXXXXX 60
           M++HVKGP PP  P L HPNWN+ V+RFTAPLALT ++CRI XXXXXXXXXXXXXXXXXX
Sbjct: 1   MLTHVKGPLPPTPPTLPHPNWNTTVLRFTAPLALTTSTCRIXXXXXXXXXXXXXXXXXXX 60

Query: 61  XXXXXXXXXXXXXXXXXXXXSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120
           XXXXXXXXXXXXXXXXXXX SNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT
Sbjct: 61  XXXXXXXXXXXXXXXXXXXLSNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGT 120

Query: 121 CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP
Sbjct: 121 CIRGGDGSPGEGPLNIRRPIVVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171

[Close]

BLAST of Carg24253 vs. TrEMBL
Match: tr|A0A2N9J073|A0A2N9J073_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57711 PE=4 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.8e-44
Identity = 85/91 (93.41%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 80  SNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRRPI 139
           SNIPQTLSGECA P DCKKARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGPLN+RRP+
Sbjct: 703 SNIPQTLSGECALPKDCKKARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPLNVRRPL 762

Query: 140 VVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           VVFKQGFRSRQYCLVECSDICNLIGDGDDGP
Sbjct: 763 VVFKQGFRSRQYCLVECSDICNLIGDGDDGP 793

[Close]

BLAST of Carg24253 vs. TrEMBL
Match: tr|A0A2I4G305|A0A2I4G305_9ROSI (uncharacterized protein LOC109004254 OS=Juglans regia OX=51240 GN=LOC109004254 PE=4 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 2.4e-44
Identity = 84/91 (92.31%), Postives = 88/91 (96.70%), Query Frame = 0


Query: 80  SNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRRPI 139
           SNIPQTLSGECA P DCK+ARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGPLN+RRP+
Sbjct: 89  SNIPQTLSGECASPKDCKRARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPLNVRRPL 148

Query: 140 VVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           VVFKQGFRSRQYCLVECSDICNLIGDGDDGP
Sbjct: 149 VVFKQGFRSRQYCLVECSDICNLIGDGDDGP 179

[Close]

BLAST of Carg24253 vs. TrEMBL
Match: tr|A0A2P4KB62|A0A2P4KB62_QUESU (Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_75698 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 5.2e-44
Identity = 84/91 (92.31%), Postives = 87/91 (95.60%), Query Frame = 0


Query: 80  SNIPQTLSGECAQPSDCKKARIQRPKSRKAESCTIKCVGTCIRGGDGSPGEGPLNIRRPI 139
           SNIPQTLSGECA P DCKKARIQRPKSRKAESCTIKCV TCIRGG+GSPGEGP N+RRP+
Sbjct: 93  SNIPQTLSGECALPKDCKKARIQRPKSRKAESCTIKCVTTCIRGGEGSPGEGPFNVRRPL 152

Query: 140 VVFKQGFRSRQYCLVECSDICNLIGDGDDGP 171
           VVFKQGFRSRQYCLVECSDICNLIGDGDDGP
Sbjct: 153 VVFKQGFRSRQYCLVECSDICNLIGDGDDGP 183

The following BLAST results are available for this feature:

BLAST of Carg24253 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022934222.1	3.5e-68	100.00	uncharacterized protein LOC111441457 isoform X2 [Cucurbita moschata]	[more]
XP_023526623.1	3.5e-68	100.00	uncharacterized protein LOC111790064 isoform X2 [Cucurbita pepo subsp. pepo]	[more]
XP_022983921.1	1.3e-67	99.41	uncharacterized protein LOC111482398 isoform X2 [Cucurbita maxima]	[more]
XP_008456185.1	5.8e-63	93.57	PREDICTED: uncharacterized protein LOC103496200 [Cucumis melo]	[more]
XP_004140725.1	9.3e-61	91.23	PREDICTED: uncharacterized protein LOC101203967 [Cucumis sativus] >KGN57482.1 hy...	[more]

BLAST of Carg24253 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G78995.1	1.1e-36	78.02	unknown protein	[more]

BLAST of Carg24253 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of Carg24253 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3C289\|A0A1S3C289_CUCME	3.9e-63	93.57	uncharacterized protein LOC103496200 OS=Cucumis melo OX=3656 GN=LOC103496200 PE=...	[more]
tr\|A0A0A0LA46\|A0A0A0LA46_CUCSA	6.2e-61	91.23	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G198460 PE=4 SV=1	[more]
tr\|A0A2N9J073\|A0A2N9J073_FAGSY	1.8e-44	93.41	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS57711 PE=4 SV=1	[more]
tr\|A0A2I4G305\|A0A2I4G305_9ROSI	2.4e-44	92.31	uncharacterized protein LOC109004254 OS=Juglans regia OX=51240 GN=LOC109004254 P...	[more]
tr\|A0A2P4KB62\|A0A2P4KB62_QUESU	5.2e-44	92.31	Uncharacterized protein OS=Quercus suber OX=58331 GN=CFP56_75698 PE=4 SV=1	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg24253-RA	Carg24253-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..91
None	No IPR available	PANTHER	PTHR36006	FAMILY NOT NAMED	coord: 36..170
None	No IPR available	PANTHER	PTHR36006:SF2	SUBFAMILY NOT NAMED	coord: 36..170

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg24253	Cla013114	Watermelon (97103) v1	carwmB0166
Carg24253	Csa3G198460	Cucumber (Chinese Long) v2	carcuB0196
Carg24253	MELO3C019561	Melon (DHL92) v3.5.1	carmeB0181
Carg24253	ClCG05G010440	Watermelon (Charleston Gray)	carwcgB0168
Carg24253	CSPI03G17980	Wild cucumber (PI 183967)	carcpiB0203
Carg24253	Cucsa.108770	Cucumber (Gy14) v1	carcgyB0216
Carg24253	CmaCh14G008830	Cucurbita maxima (Rimu)	carcmaB0240
Carg24253	CmoCh14G009010	Cucurbita moschata (Rifu)	carcmoB0248
Carg24253	Lsi05G002560	Bottle gourd (USVL1VR-Ls)	carlsiB158
Carg24253	Cp4.1LG03g05450	Cucurbita pepo (Zucchini)	carcpeB0257
Carg24253	CsGy3G017920	Cucumber (Gy14) v2	carcgybB0190
Carg24253	MELO3C019561.2	Melon (DHL92) v3.6.1	carmedB0185
Carg24253	CsaV3_3G018050	Cucumber (Chinese Long) v3	carcucB0203
Carg24253	Cla97C05G092820	Watermelon (97103) v2	carwmbB0181
Carg24253	Bhi01G001298	Wax gourd	carwgoB0227

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg24253	Silver-seed gourd	carcarB213
Carg24253	Cucurbita maxima (Rimu)	carcmaB0241
Carg24253	Cucurbita moschata (Rifu)	carcmoB0249
Carg24253	Cucurbita pepo (Zucchini)	carcpeB0256