Cla004305 (gene) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla004305
Type	gene
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Cox19 family protein (CHCH motif) (AHRD V1 -- F4I2K8_ARATH); contains Interpro domain(s) IPR009069 MTCP1
Location	Chr5 : 9836161 .. 9836408 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTCCGCCGAGCAAAGAACCCTGCAAGAAAGAGGCGTGCGACATTCAAGCTTGTCTCTCCAAAAACAACTTTCTTCCTCACAAGTAGGTTTAATTTAAGATTTTTCTTTCCAATTTGTTTCCCGAGGAATCTGCGATGAAAGAAGCTCTAGTTTTTAAGCTATTCATCGATTTAGTCATTTGCATGAATCGGAGGGTACAAGGGTTAATATTCTTGTGTTCCTGTATCTATTAACGAAACTCTGA

mRNA sequence

ATGCCTCCGCCGAGCAAAGAACCCTGCAAGAAAGAGGCGTGCGACATTCAAGCTTGTCTCTCCAAAAACAACTTTCTTCCTCACAATCATTTGCATGAATCGGAGGGTACAAGGGTTAATATTCTTGTGTTCCTGTATCTATTAACGAAACTCTGA

Coding sequence (CDS)

ATGCCTCCGCCGAGCAAAGAACCCTGCAAGAAAGAGGCGTGCGACATTCAAGCTTGTCTCTCCAAAAACAACTTTCTTCCTCACAATCATTTGCATGAATCGGAGGGTACAAGGGTTAATATTCTTGTGTTCCTGTATCTATTAACGAAACTCTGA

Protein sequence

MPPPSKEPCKKEACDIQACLSKNNFLPHNHLHESEGTRVNILVFLYLLTKL

Homology

[Close]

BLAST of Cla004305 vs. TrEMBL
Match: A0A0A0LC41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228340 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 8.3e-08
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPH 29
          MPPP KEPCKKEACDIQACL+KNNFLPH
Sbjct: 1  MPPPIKEPCKKEACDIQACLTKNNFLPH 28

[Close]

BLAST of Cla004305 vs. TrEMBL
Match: A0A078DVU5_BRANA (BnaA06g05680D protein OS=Brassica napus GN=BnaA06g05680D PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-07
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLP 28
          MP PSKEPCKKEACDIQACLSKNNFLP
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLP 27

[Close]

BLAST of Cla004305 vs. TrEMBL
Match: A0A078E2X6_BRANA (BnaC05g07220D protein OS=Brassica napus GN=BnaC05g07220D PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-07
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLP 28
          MP PSKEPCKKEACDIQACLSKNNFLP
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLP 27

[Close]

BLAST of Cla004305 vs. TrEMBL
Match: A0A0D3C8V2_BRAOL (Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 5.4e-07
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLP 28
          MP PSKEPCKKEACDIQACLSKNNFLP
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLP 27

[Close]

BLAST of Cla004305 vs. TrEMBL
Match: B9SSN8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1374940 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 3.5e-06
Identity = 26/31 (83.87%), Postives = 26/31 (83.87%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHNHL 32
          M  PSKEPCKKEACDIQACLSKNNFLP   L
Sbjct: 1  MAQPSKEPCKKEACDIQACLSKNNFLPQRCL 31

[Close]

BLAST of Cla004305 vs. NCBI nr
Match: gi|659112052|ref|XP_008456041.1| (PREDICTED: cx9C motif-containing protein 4 [Cucumis melo])

HSP 1 Score: 63.9 bits (154), Expect = 9.1e-08
Identity = 27/28 (96.43%), Postives = 27/28 (96.43%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPH 29
          MP PSKEPCKKEACDIQACLSKNNFLPH
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLPH 28

[Close]

BLAST of Cla004305 vs. NCBI nr
Match: gi|449457033|ref|XP_004146253.1| (PREDICTED: cx9C motif-containing protein 4 [Cucumis sativus])

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-07
Identity = 26/28 (92.86%), Postives = 27/28 (96.43%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPH 29
          MPPP KEPCKKEACDIQACL+KNNFLPH
Sbjct: 1  MPPPIKEPCKKEACDIQACLTKNNFLPH 28

[Close]

BLAST of Cla004305 vs. NCBI nr
Match: gi|1012007401|ref|XP_015945411.1| (PREDICTED: cx9C motif-containing protein 4 [Arachis duranensis])

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-07
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLP 28
          MP PSKEPCKKEACDIQACLSKNNFLP
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLP 27

[Close]

BLAST of Cla004305 vs. NCBI nr
Match: gi|685315323|ref|XP_009148280.1| (PREDICTED: cx9C motif-containing protein 4 [Brassica rapa])

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-07
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLP 28
          MP PSKEPCKKEACDIQACLSKNNFLP
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLP 27

[Close]

BLAST of Cla004305 vs. NCBI nr
Match: gi|923828740|ref|XP_013696772.1| (PREDICTED: cx9C motif-containing protein 4-like [Brassica napus])

HSP 1 Score: 60.8 bits (146), Expect = 7.7e-07
Identity = 26/27 (96.30%), Postives = 26/27 (96.30%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLP 28
          MP PSKEPCKKEACDIQACLSKNNFLP
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLP 27

The following BLAST results are available for this feature:

BLAST of Cla004305 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC41_CUCSA	8.3e-08	92.86	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228340 PE=4 SV=1	[more]
A0A078DVU5_BRANA	5.4e-07	96.30	BnaA06g05680D protein OS=Brassica napus GN=BnaA06g05680D PE=4 SV=1	[more]
A0A078E2X6_BRANA	5.4e-07	96.30	BnaC05g07220D protein OS=Brassica napus GN=BnaC05g07220D PE=4 SV=1	[more]
A0A0D3C8V2_BRAOL	5.4e-07	96.30	Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1	[more]
B9SSN8_RICCO	3.5e-06	83.87	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1374940 PE=4 SV=1	[more]

BLAST of Cla004305 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112052\|ref\|XP_008456041.1\|	9.1e-08	96.43	PREDICTED: cx9C motif-containing protein 4 [Cucumis melo]	[more]
gi\|449457033\|ref\|XP_004146253.1\|	1.2e-07	92.86	PREDICTED: cx9C motif-containing protein 4 [Cucumis sativus]	[more]
gi\|1012007401\|ref\|XP_015945411.1\|	7.7e-07	96.30	PREDICTED: cx9C motif-containing protein 4 [Arachis duranensis]	[more]
gi\|685315323\|ref\|XP_009148280.1\|	7.7e-07	96.30	PREDICTED: cx9C motif-containing protein 4 [Brassica rapa]	[more]
gi\|923828740\|ref\|XP_013696772.1\|	7.7e-07	96.30	PREDICTED: cx9C motif-containing protein 4-like [Brassica napus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR009069	Cys_alpha_HP_mot_SF
IPR027179	MTCP1

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Unigene

This gene is associated with the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
WMU08787	watermelon unigene v2 vs TrEMBL	transcribed_cluster

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cla004305	Cla004305.1	mRNA

The following transcribed_cluster feature(s) are associated with this gene:


Feature Name	Unique Name	Type
WMU08787	WMU08787	transcribed_cluster

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 4..27 score: 1.
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 5..26 score: 3.1
IPR027179	Mature-T-Cell Proliferation I type	PFAM	PF08991	MTCP1	coord: 8..28 score: 8.
None	No IPR available	PANTHER	PTHR15590	FAMILY NOT NAMED	coord: 1..27 score: 7.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cla004305	Cla97C05G091780	Watermelon (97103) v2	wmwmbB206
Cla004305	Csa3G228340	Cucumber (Chinese Long) v2	cuwmB243
Cla004305	CSPI03G19190	Wild cucumber (PI 183967)	cpiwmB242
Cla004305	Cucsa.032830	Cucumber (Gy14) v1	cgywmB002
Cla004305	CmaCh04G005440	Cucurbita maxima (Rimu)	cmawmB703
Cla004305	CmoCh04G005780	Cucurbita moschata (Rifu)	cmowmB699
Cla004305	Lsi05G001540	Bottle gourd (USVL1VR-Ls)	lsiwmB361
Cla004305	Cp4.1LG01g01720	Cucurbita pepo (Zucchini)	cpewmB433
Cla004305	CsGy3G019140	Cucumber (Gy14) v2	cgybwmB229
Cla004305	MELO3C031671.2	Melon (DHL92) v3.6.1	medwmB448
Cla004305	Carg13196	Silver-seed gourd	carwmB0048
Cla004305	CsaV3_3G019300	Cucumber (Chinese Long) v3	cucwmB252
Cla004305	Bhi01G001184	Wax gourd	wgowmB202

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cla004305	Silver-seed gourd	carwmB0655
Cla004305	Cucurbita maxima (Rimu)	cmawmB317
Cla004305	Cucurbita moschata (Rifu)	cmowmB311
Cla004305	Melon (DHL92) v3.5.1	mewmB461
Cla004305	Watermelon (Charleston Gray)	wcgwmB286
Cla004305	Cucurbita pepo (Zucchini)	cpewmB228