Lsi05G001540 (gene) Bottle gourd (USVL1VR-Ls) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Lsi05G001540
Type	gene
Organism	Lagenaria siceraria (Bottle gourd (USVL1VR-Ls))
Description	Cx9C motif-containing protein 4
Location	chr05 : 2268039 .. 2270984 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTGGACATCGCGAGAGAGAGAAATGCCTCCGCCGAGCAAAGAACCCTGCAAGAAGGAGGCGTGCGACATTCAAGCTTGTCTCTCCAAAAACAACTTTCTTCCTCACAAGTAACTTTACTTTAAGATTTTTCTTTCCAGTTTGTTTCCCGAGCAATCTGCGATGAAAGAATCTCTAGTTTTTAAGCTATTCATCGATGTTTTATGTTGTTCGATTGAGTCATTTGCATGAATCGGAGGGTAGAAGTGTTGAATTTGAATATTTCTTTCTTTCTTTGTTTTCCTGTATCTATTAACGAAACTCTGGACTGCTGTATGTCCTTTCTGTTTTGTGCTTGTTCTATCCTTTGAATTATCAATAATCTCCCTTTGCCGTGTGCGATCAAACAAAAATTTGATTAAGCAATGAAACAGGACAGCTTTTAGGTTTAATTCTTCGATGTGGATAACATTTTGGTTTTTAGTTTTGATCCGTTTTCTTTCCTCTTCATGTTTGGTTCATTGACCTACGTATTTAGACCCAGTATTGTAATCCTTGATTTGGGAATTTTCGGATAGCTTTCTGAGGCCTCTATCTGTTCGTAAGAATTTTGTATAATTTTGTGTTGCTTTGGACTATCTTTTGTTCATTTTTGAAATTGAGATGCATTTTCATGTACTTCTAATCTGATAATTAAAGATGAAGCTTATTTCCCATGTTCCGAAGATCAAATTACTTCTTTGTGGCTACAATAGGTTGGTCAGTCCTCCCGAATGATGTCTTCATGATTATAAGTGGAAGAAATATTTTCTATGAAGTTATGGTTTCTTATGAATTATCTAATTCTCATCCGCTCGTGTATATTCTACTCTGATTTTCAGCCCCTTCTATTAATTCATGAAGATCACCGAACTTACACATTTCCTAGATATTCTTGTTGTTTATTTGGGTACCAGAGCGATTAGTTTGTTTGATTTTCCTTTGTTATTCTCCCCTGCTAGAGGAACGGGAATTTACTGAAGATCATATTTCTATTTTCCACAAACCGTTTTCAATTTCTACTTCTATTACTCTGTCTCGCCAATGATAGATTGGCAGTGTAGTCTGTGCATGTGGAATATGGTATACAAAGCTCCTCCTTTCTTCCTCTTTTTTTCTTTTTTATCTCTTTTTATTGTTATCTTTTGGTAGTTTCTTCTGACTAGAGGTATAAATTTGGTGCATTTGTGCTGGAAGGTTGTTAAAAATGTAGATAATTGATGAACGGATTTTTTGTGACAATCAGATTTTAGCTCAAAGTTTGAAAGCTCACTGGTATTGACCACATTTGACAGGCTTAAGTCCAGTAGATGTTGAAGTATGTTCTTTTTTATGTTGTATGCATGAAGTGTCTGTCGTAGACTCGTAGTTCTATCATTCATACCTGATGAGTAAGAAGTTGGATTTGGATTCAAGTATATGCTAAAGGATGTGGTTCTTGGAAAACTTGCCTGCTGACCTAATTCAGGAGAAATGTTTTAACCTTCAAATTGCTGATCGACAAAAAGTTATAGGCATTATTTAGAGACACTTGTATTGAAAGAGAAGAACGTCCACCTAGATGATAGTGTTAATAATCCATCCCCATGTCCAAAAAAGCCAAGTAGATACAAATAGAAGCAGCAGCATGGATTTATTGTTTTCTGATCTCCCTGAAAGTAGTTCATAATGAAGTGGGCTTAAAAAAAAAACAAGAGCCTAGCTTGGAATTCAACCTGGGACTGTAAACAATAAACATCTTCAACAGCAATCCTTCATCTCAAGGGTTACTGTCAGATTTTAGCATAAAGCTTTTCCCAAGTTCTTCTAGCGAGAATGTAAAATCTTTGTTCTGCTTTGTTGCAGCTGTTTTAGCTCTCCATTCATCTCTCTTTCCAAAATCTTTCCAGTTGGAGAGAATCGATAAACATGTTGGTTTACACTAGAGATAAATAGATCATTACATCACCATCCTACTGCATTACATGGTTTGTGATAATGTTGAAGTTTGATAAGTGTCAATATGATGTGGATACTATTGTGCAGTTAAAACTTTCCAGGAAGTATAAAACCTAATCAACCTAATCCTTCCTTTTGTTTGTTTCCCTTCCCCCCGCTCCAAGAATATTACAACACATAATTTACGACCTTTTAAAAAGAGTAGGGATGCTTTAACATCCGAGTTATGTCGATGTAGACAAACATTTGAATTTTAGGGTTATAATAGGTTAAGCAACCTACTCCCTCCTTGGGAGGAATTGGAATGTTTTCTTATTTTATTTATTCTCCTATCAATGTGGATCAGCGATATGCTCTCGTTGTTCTTTTTGGAAATGGCTGCTTGTCCTCTTAACTCTTAGATATTCATAACACTTTTTGTTTATGTGATGGGAAAGGCTTTTGCATGTAGATATATTGATATGTTCCTAAAGCAATTTGTGCATTGACATGGTTGTAGGTGCGTCAGGGTCATTCAACTATTGCAATACTGCTGTGAGAACTGCAATTACAAATCAACACATTGTGCTTCTGTTTCTGACCTCTTGAAGCAAATGCCAAAGCCGAAAAGCCAGAAATCTTGATTCAAGACATCTCGGATGTAATTCAATTCATCACTGGCTATTGCTTTTACCTCGAACCAACGATGAAGGAAGCTAGAAACGAACCACATTTTGCAAAATAGGTGAAGGAAAAGAGATGAGACCAAAGGGGTCAAATATTTGATGGATCAGTCAAGAGCTAATAAAGTTGCCATTTCTTCCCAATCATTCATCGAGCAATCCTTTATAACAAAATATTTTAATTCTTTATCTCCATGTTAAACCATGATACAGATTGACGACTAATTTTGACCCTGTTTCAGTTTGTAATTTTCTGTTTTGGACACAACAATTACTTGAAAGAATCAATTAAACTTGAATGATATGCTTTCCAAGTTAGTGGATCTCAA

mRNA sequence

GTTGGACATCGCGAGAGAGAGAAATGCCTCCGCCGAGCAAAGAACCCTGCAAGAAGGAGGCGTGCGACATTCAAGCTTGTCTCTCCAAAAACAACTTTCTTCCTCACAAGTGCGTCAGGGTCATTCAACTATTGCAATACTGCTGTGAGAACTGCAATTACAAATCAACACATTGTGCTTCTGTTTCTGACCTCTTGAAGCAAATGCCAAAGCCGAAAAGCCAGAAATCTTGATTCAAGACATCTCGGATGTAATTCAATTCATCACTGGCTATTGCTTTTACCTCGAACCAACGATGAAGGAAGCTAGAAACGAACCACATTTTGCAAAATAGGTGAAGGAAAAGAGATGAGACCAAAGGGGTCAAATATTTGATGGATCAGTCAAGAGCTAATAAAGTTGCCATTTCTTCCCAATCATTCATCGAGCAATCCTTTATAACAAAATATTTTAATTCTTTATCTCCATGTTAAACCATGATACAGATTGACGACTAATTTTGACCCTGTTTCAGTTTGTAATTTTCTGTTTTGGACACAACAATTACTTGAAAGAATCAATTAAACTTGAATGATATGCTTTCCAAGTTAGTGGATCTCAA

Coding sequence (CDS)

ATGCCTCCGCCGAGCAAAGAACCCTGCAAGAAGGAGGCGTGCGACATTCAAGCTTGTCTCTCCAAAAACAACTTTCTTCCTCACAAGTGCGTCAGGGTCATTCAACTATTGCAATACTGCTGTGAGAACTGCAATTACAAATCAACACATTGTGCTTCTGTTTCTGACCTCTTGAAGCAAATGCCAAAGCCGAAAAGCCAGAAATCTTGA

Protein sequence

MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQMPKPKSQKS

Homology

[Close]

BLAST of Lsi05G001540 vs. Swiss-Prot
Match: CMC4_MOUSE (Cx9C motif-containing protein 4 OS=Mus musculus GN=Cmc4 PE=2 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 4.7e-07
Identity = 22/38 (57.89%), Postives = 28/38 (73.68%), Query Frame = 1


Query: 4  PSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCC 42
          P K+PC+K+AC+IQ CL  NN+L  KC  VIQ L+ CC
Sbjct: 2  PQKDPCQKQACEIQKCLQANNYLESKCQAVIQELRKCC 39

[Close]

BLAST of Lsi05G001540 vs. Swiss-Prot
Match: CMC4_BOVIN (Cx9C motif-containing protein 4 OS=Bos taurus GN=CMC4 PE=3 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 1.8e-06
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1


Query: 4  PSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCC 42
          P K+PC+K+AC+IQ CL  NN++  KC  VI+ L+ CC
Sbjct: 2  PQKDPCQKQACEIQKCLQANNYMESKCQAVIEELRKCC 39

[Close]

BLAST of Lsi05G001540 vs. Swiss-Prot
Match: CMC4_HUMAN (Cx9C motif-containing protein 4 OS=Homo sapiens GN=CMC4 PE=1 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 3.0e-06
Identity = 20/38 (52.63%), Postives = 28/38 (73.68%), Query Frame = 1


Query: 4  PSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCC 42
          P K+PC+K+AC+IQ CL  N+++  KC  VIQ L+ CC
Sbjct: 2  PQKDPCQKQACEIQKCLQANSYMESKCQAVIQELRKCC 39

[Close]

BLAST of Lsi05G001540 vs. TrEMBL
Match: A0A0A0LC41_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228340 PE=4 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 7.5e-28
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          MPPP KEPCKKEACDIQACL+KNNFLPHKCVRVIQLLQ+CCENC+YKSTHCASVS LLKQ
Sbjct: 1  MPPPIKEPCKKEACDIQACLTKNNFLPHKCVRVIQLLQHCCENCDYKSTHCASVSGLLKQ 60

Query: 61 MPKPKSQKS 70
          + KPK QKS
Sbjct: 61 I-KPKGQKS 68

[Close]

BLAST of Lsi05G001540 vs. TrEMBL
Match: D7TGV7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00710 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 9.5e-23
Identity = 52/63 (82.54%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          MP  SKEPCKKEACDIQACLSKNNFLP KC RVI+LLQ CCE C Y STHC SVSDLLKQ
Sbjct: 1  MPKQSKEPCKKEACDIQACLSKNNFLPQKCRRVIELLQSCCEKCEYNSTHCGSVSDLLKQ 60

Query: 61 MPK 64
           PK
Sbjct: 61 KPK 63

[Close]

BLAST of Lsi05G001540 vs. TrEMBL
Match: A0A022QEZ0_ERYGU (Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017584mg PE=4 SV=1)

HSP 1 Score: 112.1 bits (279), Expect = 2.8e-22
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          M  PSKEPCKK+ACDIQ+CLSKNNFLP KC++VIQLLQ+CCE C YKSTHC SVS LLKQ
Sbjct: 1  MAQPSKEPCKKQACDIQSCLSKNNFLPQKCIKVIQLLQFCCEQCEYKSTHCGSVSGLLKQ 60

Query: 61 MPK 64
          + K
Sbjct: 61 INK 63

[Close]

BLAST of Lsi05G001540 vs. TrEMBL
Match: A0A059AUJ6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02752 PE=4 SV=1)

HSP 1 Score: 111.7 bits (278), Expect = 3.6e-22
Identity = 50/66 (75.76%), Postives = 56/66 (84.85%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          M  PSKEPCKKEACDIQACL+KNNF+P KC+R I+ LQ CCE+C YKSTHCASVS LLKQ
Sbjct: 1  MAQPSKEPCKKEACDIQACLTKNNFIPQKCLRFIEALQSCCEHCEYKSTHCASVSGLLKQ 60

Query: 61 MPKPKS 67
           PK K+
Sbjct: 61 KPKSKA 66

[Close]

BLAST of Lsi05G001540 vs. TrEMBL
Match: S8D116_9LAMI (Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_01308 PE=4 SV=1)

HSP 1 Score: 111.3 bits (277), Expect = 4.7e-22
Identity = 50/63 (79.37%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          M   SKE CK+EACDIQACLSKNNFLP KC++VIQLLQ+CCE C YKSTHCASVSDLLKQ
Sbjct: 1  MAQQSKETCKREACDIQACLSKNNFLPQKCIKVIQLLQFCCEQCEYKSTHCASVSDLLKQ 60

Query: 61 MPK 64
          + K
Sbjct: 61 INK 63

[Close]

BLAST of Lsi05G001540 vs. TAIR10
Match: AT1G09794.1 (AT1G09794.1 Cox19 family protein (CHCH motif))

HSP 1 Score: 104.8 bits (260), Expect = 2.2e-23
Identity = 47/63 (74.60%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          M  PSKEPCKKEACDIQACLSKNNFLP +C RVI++LQ CCE CN +STHC SV+ LLKQ
Sbjct: 1  MAQPSKEPCKKEACDIQACLSKNNFLPQRCQRVIEMLQACCERCNNESTHCGSVAALLKQ 60

Query: 61 MPK 64
          + K
Sbjct: 61 IKK 63

[Close]

BLAST of Lsi05G001540 vs. NCBI nr
Match: gi|659112052|ref|XP_008456041.1| (PREDICTED: cx9C motif-containing protein 4 [Cucumis melo])

HSP 1 Score: 132.1 bits (331), Expect = 3.7e-28
Identity = 63/69 (91.30%), Postives = 66/69 (95.65%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          MP PSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQ CCE+C+YKSTHCASVSDLLKQ
Sbjct: 1  MPQPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQLCCEDCDYKSTHCASVSDLLKQ 60

Query: 61 MPKPKSQKS 70
          + KPKSQKS
Sbjct: 61 I-KPKSQKS 68

[Close]

BLAST of Lsi05G001540 vs. NCBI nr
Match: gi|449457033|ref|XP_004146253.1| (PREDICTED: cx9C motif-containing protein 4 [Cucumis sativus])

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-27
Identity = 61/69 (88.41%), Postives = 65/69 (94.20%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          MPPP KEPCKKEACDIQACL+KNNFLPHKCVRVIQLLQ+CCENC+YKSTHCASVS LLKQ
Sbjct: 1  MPPPIKEPCKKEACDIQACLTKNNFLPHKCVRVIQLLQHCCENCDYKSTHCASVSGLLKQ 60

Query: 61 MPKPKSQKS 70
          + KPK QKS
Sbjct: 61 I-KPKGQKS 68

[Close]

BLAST of Lsi05G001540 vs. NCBI nr
Match: gi|359486167|ref|XP_003633403.1| (PREDICTED: cx9C motif-containing protein 4 [Vitis vinifera])

HSP 1 Score: 113.6 bits (283), Expect = 1.4e-22
Identity = 52/63 (82.54%), Postives = 53/63 (84.13%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          MP  SKEPCKKEACDIQACLSKNNFLP KC RVI+LLQ CCE C Y STHC SVSDLLKQ
Sbjct: 1  MPKQSKEPCKKEACDIQACLSKNNFLPQKCRRVIELLQSCCEKCEYNSTHCGSVSDLLKQ 60

Query: 61 MPK 64
           PK
Sbjct: 61 KPK 63

[Close]

BLAST of Lsi05G001540 vs. NCBI nr
Match: gi|747080868|ref|XP_011087700.1| (PREDICTED: cx9C motif-containing protein 4 [Sesamum indicum])

HSP 1 Score: 112.8 bits (281), Expect = 2.3e-22
Identity = 52/63 (82.54%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          M  PSKEPCKK+ACDIQACLSKNNFLP KCV+VIQLLQ CCE C YKSTHCASVS LLKQ
Sbjct: 1  MGQPSKEPCKKQACDIQACLSKNNFLPQKCVKVIQLLQSCCEQCEYKSTHCASVSGLLKQ 60

Query: 61 MPK 64
          + K
Sbjct: 61 INK 63

[Close]

BLAST of Lsi05G001540 vs. NCBI nr
Match: gi|848900407|ref|XP_012850363.1| (PREDICTED: cx9C motif-containing protein 4 [Erythranthe guttata])

HSP 1 Score: 112.1 bits (279), Expect = 4.0e-22
Identity = 49/63 (77.78%), Postives = 55/63 (87.30%), Query Frame = 1


Query: 1  MPPPSKEPCKKEACDIQACLSKNNFLPHKCVRVIQLLQYCCENCNYKSTHCASVSDLLKQ 60
          M  PSKEPCKK+ACDIQ+CLSKNNFLP KC++VIQLLQ+CCE C YKSTHC SVS LLKQ
Sbjct: 1  MAQPSKEPCKKQACDIQSCLSKNNFLPQKCIKVIQLLQFCCEQCEYKSTHCGSVSGLLKQ 60

Query: 61 MPK 64
          + K
Sbjct: 61 INK 63

The following BLAST results are available for this feature:

BLAST of Lsi05G001540 vs. Swiss-Prot


Match Name	E-value	Identity	Description
CMC4_MOUSE	4.7e-07	57.89	Cx9C motif-containing protein 4 OS=Mus musculus GN=Cmc4 PE=2 SV=1	[more]
CMC4_BOVIN	1.8e-06	52.63	Cx9C motif-containing protein 4 OS=Bos taurus GN=CMC4 PE=3 SV=1	[more]
CMC4_HUMAN	3.0e-06	52.63	Cx9C motif-containing protein 4 OS=Homo sapiens GN=CMC4 PE=1 SV=1	[more]

BLAST of Lsi05G001540 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LC41_CUCSA	7.5e-28	88.41	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G228340 PE=4 SV=1	[more]
D7TGV7_VITVI	9.5e-23	82.54	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00710 PE=4 SV=...	[more]
A0A022QEZ0_ERYGU	2.8e-22	77.78	Uncharacterized protein OS=Erythranthe guttata GN=MIMGU_mgv1a017584mg PE=4 SV=1	[more]
A0A059AUJ6_EUCGR	3.6e-22	75.76	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_I02752 PE=4 SV=1	[more]
S8D116_9LAMI	4.7e-22	79.37	Uncharacterized protein (Fragment) OS=Genlisea aurea GN=M569_01308 PE=4 SV=1	[more]

BLAST of Lsi05G001540 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G09794.1	2.2e-23	74.60	Cox19 family protein (CHCH motif)	[more]

BLAST of Lsi05G001540 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659112052\|ref\|XP_008456041.1\|	3.7e-28	91.30	PREDICTED: cx9C motif-containing protein 4 [Cucumis melo]	[more]
gi\|449457033\|ref\|XP_004146253.1\|	1.1e-27	88.41	PREDICTED: cx9C motif-containing protein 4 [Cucumis sativus]	[more]
gi\|359486167\|ref\|XP_003633403.1\|	1.4e-22	82.54	PREDICTED: cx9C motif-containing protein 4 [Vitis vinifera]	[more]
gi\|747080868\|ref\|XP_011087700.1\|	2.3e-22	82.54	PREDICTED: cx9C motif-containing protein 4 [Sesamum indicum]	[more]
gi\|848900407\|ref\|XP_012850363.1\|	4.0e-22	77.78	PREDICTED: cx9C motif-containing protein 4 [Erythranthe guttata]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR027179	MTCP1
IPR009069	Cys_alpha_HP_mot_SF

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Lsi05G001540.1	Lsi05G001540.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Lagenaria siceraria
Date Performed: 2017-09-18


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009069	Cysteine alpha-hairpin motif superfamily	GENE3D	G3DSA:1.10.810.10		coord: 4..67 score: 5.1
IPR009069	Cysteine alpha-hairpin motif superfamily	unknown	SSF47072	Cysteine alpha-hairpin motif	coord: 5..63 score: 7.06
IPR027179	Mature-T-Cell Proliferation I type	PFAM	PF08991	MTCP1	coord: 8..61 score: 7.9
None	No IPR available	PANTHER	PTHR15590	FAMILY NOT NAMED	coord: 1..65 score: 2.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Lsi05G001540	Csa3G228340	Cucumber (Chinese Long) v2	culsiB211
Lsi05G001540	CSPI03G19190	Wild cucumber (PI 183967)	cpilsiB209
Lsi05G001540	Cucsa.032830	Cucumber (Gy14) v1	cgylsiB003
Lsi05G001540	CmaCh04G005440	Cucurbita maxima (Rimu)	cmalsiB690
Lsi05G001540	CmoCh04G005780	Cucurbita moschata (Rifu)	cmolsiB683
Lsi05G001540	Cla004305	Watermelon (97103) v1	lsiwmB361
Lsi05G001540	MELO3C031671.2	Melon (DHL92) v3.6.1	lsimedB384
Lsi05G001540	Cla97C05G091780	Watermelon (97103) v2	lsiwmbB329
Lsi05G001540	Bhi01G001184	Wax gourd	lsiwgoB431
Lsi05G001540	Cp4.1LG01g01720	Cucurbita pepo (Zucchini)	cpelsiB369
Lsi05G001540	CsGy3G019140	Cucumber (Gy14) v2	cgyblsiB198
Lsi05G001540	Carg13196	Silver-seed gourd	carlsiB039
Lsi05G001540	CsaV3_3G019300	Cucumber (Chinese Long) v3	cuclsiB230

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Lsi05G001540	Silver-seed gourd	carlsiB595
Lsi05G001540	Cucurbita maxima (Rimu)	cmalsiB316
Lsi05G001540	Cucurbita moschata (Rifu)	cmolsiB304
Lsi05G001540	Cucurbita pepo (Zucchini)	cpelsiB177
Lsi05G001540	Melon (DHL92) v3.5.1	lsimeB368
Lsi05G001540	Watermelon (Charleston Gray)	lsiwcgB332