Cla003930 (gene) Watermelon (97103) v1

NameCla003930
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionmRNA clone RTFL01-48-C04 (AHRD V1 **-- E4MYC1_THEHA)
LocationChr1 : 6469623 .. 6470365 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTGCTGTATAAGCAGAAGAAGAATCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCATCAATGTCCTCGGCAGTGCTGGTCCGATTCGATTTATTGTCAACGAGGAGCAACTTGTTGCTGCTGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGTCGGCTGCCGATTCTTGGGTCCGATCTTAAAGATTTTCAGCTTTACTGCCCAAATGCGGGACCAGATGGTAATTCAATCAAACTTTATCTTTTTTGATAATTCAAGAACGTGTTTTGTAACAATTTTTCCTTTACAATCATTTTGCATGTCTCAAATCTGAAATAGCTGGAGAACATTGTTATGTTATTCATAAATTTGTTACCTCTATCTCAATTTCCTTTCTTAATTTTTTTGATGGAGATCTCTGTTCTGGGATTTGTTTTGTGTTGGGATCTCTGTTCCTATATTGAGAATCTTCTGATCACAATAGGAAAAAACAATCCTTTGTTTCCTATCTGTTTCCTATCTGGGGTTTCGTTTTTCTCATGATGTTTGTAAATTTTTCTGCAGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCACGTTGTGCAAGAAACCACAGGCAGAGAAAGTGGCAGAAGATGGAAAATCTTCACCAGAGCCAAACATCCCTCGCAAAGGCGCAGGGAGCTGGAAGTCATGGATCAACAAGTCTCTGAATTTGAAAATTTATTCCCATTGA

mRNA sequence

ATGTTGCTGTATAAGCAGAAGAAGAATCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCATCAATGTCCTCGGCAGTGCTGGTCCGATTCGATTTATTGTCAACGAGGAGCAACTTGTTGCTGCTGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGTCGGCTGCCGATTCTTGGGTCCGATCTTAAAGATTTTCAGCTTTACTGCCCAAATGCGGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCACGTTGTGCAAGAAACCACAGGCAGAGAAAGTGGCAGAAGATGGAAAATCTTCACCAGAGCCAAACATCCCTCGCAAAGGCGCAGGGAGCTGGAAGTCATGGATCAACAAGTCTCTGAATTTGAAAATTTATTCCCATTGA

Coding sequence (CDS)

ATGTTGCTGTATAAGCAGAAGAAGAATCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCATCAATGTCCTCGGCAGTGCTGGTCCGATTCGATTTATTGTCAACGAGGAGCAACTTGTTGCTGCTGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGTCGGCTGCCGATTCTTGGGTCCGATCTTAAAGATTTTCAGCTTTACTGCCCAAATGCGGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCACGTTGTGCAAGAAACCACAGGCAGAGAAAGTGGCAGAAGATGGAAAATCTTCACCAGAGCCAAACATCCCTCGCAAAGGCGCAGGGAGCTGGAAGTCATGGATCAACAAGTCTCTGAATTTGAAAATTTATTCCCATTGA

Protein sequence

MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPILGSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRKGAGSWKSWINKSLNLKIYSH
BLAST of Cla003930 vs. TrEMBL
Match: A0A0A0KUW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G569870 PE=4 SV=1)

HSP 1 Score: 260.8 bits (665), Expect = 9.7e-67
Identity = 127/139 (91.37%), Postives = 130/139 (93.53%), Query Frame = 1

Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 61  GSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRKG 120
           GSDL+DFQLYCPN GPDALSPWDTIGSHGARNF LCKKPQ EKV E+GK+   P IPRK 
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVPEEGKTPSGPAIPRKS 120

Query: 121 AGSWKSWINKSLNLKIYSH 140
           AGSWKSWINKSLNLKIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

BLAST of Cla003930 vs. TrEMBL
Match: M5XHL6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013143mg PE=4 SV=1)

HSP 1 Score: 221.5 bits (563), Expect = 6.5e-55
Identity = 112/140 (80.00%), Postives = 119/140 (85.00%), Query Frame = 1

Query: 1   MLLYKQKKNQN-VKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPI 60
           MLLYKQKKN N  KGNRLLISI VLGSAGPIRF+VNEE+LVAAVIDTALKSYAREGRLP+
Sbjct: 1   MLLYKQKKNPNSAKGNRLLISITVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPV 60

Query: 61  LGSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRK 120
           LGSDL DF LYCPNAGPDALSPWDTIG+ GARNF LCKKPQ  K+  D    P   I RK
Sbjct: 61  LGSDLNDFLLYCPNAGPDALSPWDTIGAQGARNFMLCKKPQPVKM--DSDEIPAAAITRK 120

Query: 121 GAGSWKSWINKSLNLKIYSH 140
           G+GSWK+WINKSLNLKI SH
Sbjct: 121 GSGSWKAWINKSLNLKISSH 138

BLAST of Cla003930 vs. TrEMBL
Match: A0A059D744_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02935 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.1e-54
Identity = 108/139 (77.70%), Postives = 120/139 (86.33%), Query Frame = 1

Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQ+ KGNRLLISINVLGSAGPIRF+V EE+LVAAVIDTALKSYAREGRLP+L
Sbjct: 1   MLLYKQKKNQSAKGNRLLISINVLGSAGPIRFVVGEEELVAAVIDTALKSYAREGRLPVL 60

Query: 61  GSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRKG 120
           GSDL DF LYCP +G DALSPWD IGS GARNF LCKKP+ + VA+D + SP+  I RKG
Sbjct: 61  GSDLNDFLLYCPTSGSDALSPWDMIGSPGARNFLLCKKPKTDVVADD-RRSPDAGIARKG 120

Query: 121 AGSWKSWINKSLNLKIYSH 140
            GSWKSWINKS +LK+ SH
Sbjct: 121 NGSWKSWINKSFSLKVSSH 138

BLAST of Cla003930 vs. TrEMBL
Match: A0A0B0NPI3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_02623 PE=4 SV=1)

HSP 1 Score: 220.3 bits (560), Expect = 1.5e-54
Identity = 107/139 (76.98%), Postives = 122/139 (87.77%), Query Frame = 1

Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQ  KGNRLLIS+ VLGSAGPIRF+VNEE+LVAAVIDTALKSYAREGRLP+L
Sbjct: 1   MLLYKQKKNQGPKGNRLLISVTVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVL 60

Query: 61  GSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRKG 120
           GS+L DF LYCP+AG DALSPW+TIGS GARNF LCKKP+ EKV +DGK++   +I RK 
Sbjct: 61  GSNLNDFLLYCPSAGSDALSPWETIGSQGARNFMLCKKPRTEKVKDDGKAA--ESINRKA 120

Query: 121 AGSWKSWINKSLNLKIYSH 140
           +G+WK+W NKSLNLKI SH
Sbjct: 121 SGNWKAWFNKSLNLKISSH 137

BLAST of Cla003930 vs. TrEMBL
Match: A0A0D2QER4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G177100 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 5.5e-54
Identity = 106/139 (76.26%), Postives = 122/139 (87.77%), Query Frame = 1

Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKK+Q  KGNRLLIS+ VLGSAGPIRF+VNEE+LVAAVIDTALKSYAREGRLP+L
Sbjct: 1   MLLYKQKKSQGPKGNRLLISVTVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVL 60

Query: 61  GSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRKG 120
           GS+L DF LYCP+AG DALSPW+TIGS GARNF LCKKP+ EKV +DGK++   +I RK 
Sbjct: 61  GSNLNDFLLYCPSAGSDALSPWETIGSQGARNFMLCKKPRTEKVKDDGKAA--ESINRKA 120

Query: 121 AGSWKSWINKSLNLKIYSH 140
           +G+WK+W NKSLNLKI SH
Sbjct: 121 SGNWKAWFNKSLNLKISSH 137

BLAST of Cla003930 vs. NCBI nr
Match: gi|659072856|ref|XP_008467130.1| (PREDICTED: uncharacterized protein LOC103504558 [Cucumis melo])

HSP 1 Score: 266.5 bits (680), Expect = 2.5e-68
Identity = 129/139 (92.81%), Postives = 132/139 (94.96%), Query Frame = 1

Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 61  GSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRKG 120
           GSDL+DFQLYCPN GPDALSPWDTIGSHGARNF LCKKPQ EKV+E+GKS P P IPRK 
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVSEEGKSPPGPTIPRKS 120

Query: 121 AGSWKSWINKSLNLKIYSH 140
           AGSWKSWINKSLNLKIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

BLAST of Cla003930 vs. NCBI nr
Match: gi|449465759|ref|XP_004150595.1| (PREDICTED: uncharacterized protein At4g22758-like [Cucumis sativus])

HSP 1 Score: 260.8 bits (665), Expect = 1.4e-66
Identity = 127/139 (91.37%), Postives = 130/139 (93.53%), Query Frame = 1

Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 61  GSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRKG 120
           GSDL+DFQLYCPN GPDALSPWDTIGSHGARNF LCKKPQ EKV E+GK+   P IPRK 
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVPEEGKTPSGPAIPRKS 120

Query: 121 AGSWKSWINKSLNLKIYSH 140
           AGSWKSWINKSLNLKIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

BLAST of Cla003930 vs. NCBI nr
Match: gi|596205660|ref|XP_007223777.1| (hypothetical protein PRUPE_ppa013143mg [Prunus persica])

HSP 1 Score: 221.5 bits (563), Expect = 9.3e-55
Identity = 112/140 (80.00%), Postives = 119/140 (85.00%), Query Frame = 1

Query: 1   MLLYKQKKNQN-VKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPI 60
           MLLYKQKKN N  KGNRLLISI VLGSAGPIRF+VNEE+LVAAVIDTALKSYAREGRLP+
Sbjct: 1   MLLYKQKKNPNSAKGNRLLISITVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPV 60

Query: 61  LGSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRK 120
           LGSDL DF LYCPNAGPDALSPWDTIG+ GARNF LCKKPQ  K+  D    P   I RK
Sbjct: 61  LGSDLNDFLLYCPNAGPDALSPWDTIGAQGARNFMLCKKPQPVKM--DSDEIPAAAITRK 120

Query: 121 GAGSWKSWINKSLNLKIYSH 140
           G+GSWK+WINKSLNLKI SH
Sbjct: 121 GSGSWKAWINKSLNLKISSH 138

BLAST of Cla003930 vs. NCBI nr
Match: gi|702274976|ref|XP_010044204.1| (PREDICTED: uncharacterized protein At4g22758 [Eucalyptus grandis])

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-54
Identity = 108/139 (77.70%), Postives = 120/139 (86.33%), Query Frame = 1

Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQ+ KGNRLLISINVLGSAGPIRF+V EE+LVAAVIDTALKSYAREGRLP+L
Sbjct: 1   MLLYKQKKNQSAKGNRLLISINVLGSAGPIRFVVGEEELVAAVIDTALKSYAREGRLPVL 60

Query: 61  GSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRKG 120
           GSDL DF LYCP +G DALSPWD IGS GARNF LCKKP+ + VA+D + SP+  I RKG
Sbjct: 61  GSDLNDFLLYCPTSGSDALSPWDMIGSPGARNFLLCKKPKTDVVADD-RRSPDAGIARKG 120

Query: 121 AGSWKSWINKSLNLKIYSH 140
            GSWKSWINKS +LK+ SH
Sbjct: 121 NGSWKSWINKSFSLKVSSH 138

BLAST of Cla003930 vs. NCBI nr
Match: gi|728835292|gb|KHG14735.1| (hypothetical protein F383_02623 [Gossypium arboreum])

HSP 1 Score: 220.3 bits (560), Expect = 2.1e-54
Identity = 107/139 (76.98%), Postives = 122/139 (87.77%), Query Frame = 1

Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQ  KGNRLLIS+ VLGSAGPIRF+VNEE+LVAAVIDTALKSYAREGRLP+L
Sbjct: 1   MLLYKQKKNQGPKGNRLLISVTVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVL 60

Query: 61  GSDLKDFQLYCPNAGPDALSPWDTIGSHGARNFTLCKKPQAEKVAEDGKSSPEPNIPRKG 120
           GS+L DF LYCP+AG DALSPW+TIGS GARNF LCKKP+ EKV +DGK++   +I RK 
Sbjct: 61  GSNLNDFLLYCPSAGSDALSPWETIGSQGARNFMLCKKPRTEKVKDDGKAA--ESINRKA 120

Query: 121 AGSWKSWINKSLNLKIYSH 140
           +G+WK+W NKSLNLKI SH
Sbjct: 121 SGNWKAWFNKSLNLKISSH 137

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
A0A0A0KUW8_CUCSA9.7e-6791.37Uncharacterized protein OS=Cucumis sativus GN=Csa_5G569870 PE=4 SV=1[more]
M5XHL6_PRUPE6.5e-5580.00Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013143mg PE=4 SV=1[more]
A0A059D744_EUCGR1.1e-5477.70Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02935 PE=4 SV=1[more]
A0A0B0NPI3_GOSAR1.5e-5476.98Uncharacterized protein OS=Gossypium arboreum GN=F383_02623 PE=4 SV=1[more]
A0A0D2QER4_GOSRA5.5e-5476.26Uncharacterized protein OS=Gossypium raimondii GN=B456_002G177100 PE=4 SV=1[more]
Match NameE-valueIdentityDescription
gi|659072856|ref|XP_008467130.1|2.5e-6892.81PREDICTED: uncharacterized protein LOC103504558 [Cucumis melo][more]
gi|449465759|ref|XP_004150595.1|1.4e-6691.37PREDICTED: uncharacterized protein At4g22758-like [Cucumis sativus][more]
gi|596205660|ref|XP_007223777.1|9.3e-5580.00hypothetical protein PRUPE_ppa013143mg [Prunus persica][more]
gi|702274976|ref|XP_010044204.1|1.6e-5477.70PREDICTED: uncharacterized protein At4g22758 [Eucalyptus grandis][more]
gi|728835292|gb|KHG14735.1|2.1e-5476.98hypothetical protein F383_02623 [Gossypium arboreum][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU25027watermelon EST collection version 2.0transcribed_cluster
WMU38562watermelon unigene v2 vs TrEMBLtranscribed_cluster

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla003930Cla003930.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU38562WMU38562transcribed_cluster
WMU25027WMU25027transcribed_cluster


Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33270FAMILY NOT NAMEDcoord: 1..139
score: 2.9

The following gene(s) are paralogous to this gene:

None