Carg25239 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg25239
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	Senescence-associated protein
Location	Cucurbita_argyrosperma_scaffold_210 : 37043 .. 38083 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTGAAGAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTTTTTCTTCTTTTGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAGTTGACCCTTGAGATCTCTTTCTCTCTAATCCATATACTCATTTCAAGGAATTTTCATTTTCTTTAAGTTTTTGCGATTTTTCTCTTTTGATTTTTTGATACCGGCGCTAGCTTCGGTGAGTTTCTCGGGGCTGTTGTCGTCGGTATCGGGTTCCCTGATTCGGATATAGTTTGAAGGAAAAAGAAGGGATTGCGATTTCTTTTTTTTTTTTTTTTTTTTTAATGAAGATGTTGCTGTACAAGCAGAAGAAGAACCAGAATGTTAAGGGCAATAGGCTGTTGATCAGCATCAATGTGCTCGGCAGCGCTGGCCCGATTCGATTTATTGTGAGCGAGGAGCAACTTGTTGCTGATGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGCCGGCTCCCAATTCTTGGCTCTGATCTTCACGATTTCCAGCTTTATTGTCCGAGTGCTGGACCAGATGGTAATTCTAATTATATATTTTGTTCTCAATTCATTTGTGTTAATTCGTTGCAATTTTCCTCTACAATCATGTTGCATGTTTCTAATCTGAAAGGATGGTGAAAAATTAGATGTTATTCGGTATTAATCTCATTTTGTGATGGGATTCTCTGTTTTGGGATGTTTGGATTCTCTGTTGTTCTGTCTTGAGAATCCTCTGATCAAAAAAATTCTGGGCTGTAGTTTCTCATATTGTATGGGTTTTTTTGTGCAGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCACGTTGTGCAAGAAACCACAGGCAGAGAAAGCGGGAGAAGATGGAAAAGCAGCATCACGGCCAGCCATCCATCGCAAAGCCTCAGGGAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGA

mRNA sequence

ATGGTTGAAGAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTTTTTCTTCTTTTGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAATGTTGCTGTACAAGCAGAAGAAGAACCAGAATGTTAAGGGCAATAGGCTGTTGATCAGCATCAATGTGCTCGGCAGCGCTGGCCCGATTCGATTTATTGTGAGCGAGGAGCAACTTGTTGCTGATGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGCCGGCTCCCAATTCTTGGCTCTGATCTTCACGATTTCCAGCTTTATTGTCCGAGTGCTGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCACGTTGTGCAAGAAACCACAGGCAGAGAAAGCGGGAGAAGATGGAAAAGCAGCATCACGGCCAGCCATCCATCGCAAAGCCTCAGGGAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGA

Coding sequence (CDS)

ATGGTTGAAGAAAATTCCAGTAGTAGTAATTACATGCGCTCCCTTTTGGATTCAAGGGCGAGCGCTCGTCTTCCTCTTTCTGCTTTTTCTTCTTTTGCTTTTGGTTCTTGCAAGGAAGGCTGGTACTACCGCTGCCTTGGAATGTTGCTGTACAAGCAGAAGAAGAACCAGAATGTTAAGGGCAATAGGCTGTTGATCAGCATCAATGTGCTCGGCAGCGCTGGCCCGATTCGATTTATTGTGAGCGAGGAGCAACTTGTTGCTGATGTTATTGATACCGCGTTGAAATCCTACGCGCGTGAGGGCCGGCTCCCAATTCTTGGCTCTGATCTTCACGATTTCCAGCTTTATTGTCCGAGTGCTGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGAGCTCGAAACTTCACGTTGTGCAAGAAACCACAGGCAGAGAAAGCGGGAGAAGATGGAAAAGCAGCATCACGGCCAGCCATCCATCGCAAAGCCTCAGGGAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGA

Protein sequence

MVEENSSSSNYMRSLLDSRASARLPLSAFSSFAFGSCKEGWYYRCLGMLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPILGSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKASGSWKSWINKSLNMKIYSH

Homology

[Close]

BLAST of Carg25239 vs. NCBI nr
Match: XP_022959923.1 (uncharacterized protein At4g22758-like [Cucurbita moschata])

HSP 1 Score: 284.6 bits (727), Expect = 2.3e-73
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0


Query: 48  MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 107
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL
Sbjct: 3   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 62

Query: 108 GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKA 167
           GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKA
Sbjct: 63  GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKA 122

Query: 168 SGSWKSWINKSLNMKIYSH 187
           SGSWKSWINKSLNMKIYSH
Sbjct: 123 SGSWKSWINKSLNMKIYSH 141

[Close]

BLAST of Carg25239 vs. NCBI nr
Match: XP_023521148.1 (uncharacterized protein At4g22758-like [Cucurbita pepo subsp. pepo] >XP_023521149.1 uncharacterized protein At4g22758-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 283.1 bits (723), Expect = 6.8e-73
Identity = 138/139 (99.28%), Postives = 138/139 (99.28%), Query Frame = 0


Query: 48  MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 107
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL
Sbjct: 3   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 62

Query: 108 GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKA 167
           GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEK GEDGKAASRPAIHRKA
Sbjct: 63  GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKVGEDGKAASRPAIHRKA 122

Query: 168 SGSWKSWINKSLNMKIYSH 187
           SGSWKSWINKSLNMKIYSH
Sbjct: 123 SGSWKSWINKSLNMKIYSH 141

[Close]

BLAST of Carg25239 vs. NCBI nr
Match: XP_022990881.1 (uncharacterized protein At4g22758 [Cucurbita maxima])

HSP 1 Score: 280.4 bits (716), Expect = 4.4e-72
Identity = 137/139 (98.56%), Postives = 137/139 (98.56%), Query Frame = 0


Query: 48  MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 107
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL
Sbjct: 3   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 62

Query: 108 GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKA 167
           GSDLH FQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEK GEDGKAASRPAIHRKA
Sbjct: 63  GSDLHHFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKVGEDGKAASRPAIHRKA 122

Query: 168 SGSWKSWINKSLNMKIYSH 187
           SGSWKSWINKSLNMKIYSH
Sbjct: 123 SGSWKSWINKSLNMKIYSH 141

[Close]

BLAST of Carg25239 vs. NCBI nr
Match: XP_023540757.1 (uncharacterized protein At4g22758-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 266.9 bits (681), Expect = 5.0e-68
Identity = 137/162 (84.57%), Postives = 137/162 (84.57%), Query Frame = 0


Query: 48  MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 107
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL
Sbjct: 3   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 62

Query: 108 GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKK---------------------- 167
           GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKK                      
Sbjct: 63  GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKXXXXXXXXXXXXXXXXXXXXXX 122

Query: 168 -PQAEKAGEDGKAASRPAIHRKASGSWKSWINKSLNMKIYSH 187
             QAEK GEDGKAASRPAIHRKASGSWKSWINKSLNMKIYSH
Sbjct: 123 XXQAEKVGEDGKAASRPAIHRKASGSWKSWINKSLNMKIYSH 164

[Close]

BLAST of Carg25239 vs. NCBI nr
Match: XP_004150595.1 (PREDICTED: uncharacterized protein At4g22758-like [Cucumis sativus] >KGN51491.1 hypothetical protein Csa_5G569870 [Cucumis sativus])

HSP 1 Score: 250.8 bits (639), Expect = 3.7e-63
Identity = 122/139 (87.77%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 48  MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 107
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIV+EEQLVA VIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 108 GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKA 167
           GSDL DFQLYCP+ GPDALSPWDTIGSHGARNF LCKKPQ EK  E+GK  S PAI RK+
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVPEEGKTPSGPAIPRKS 120

Query: 168 SGSWKSWINKSLNMKIYSH 187
           +GSWKSWINKSLN+KIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

[Close]

BLAST of Carg25239 vs. TAIR10
Match: AT1G70780.1 (unknown protein)

HSP 1 Score: 183.7 bits (465), Expect = 1.0e-46
Identity = 90/140 (64.29%), Postives = 105/140 (75.00%), Query Frame = 0


Query: 48  MLLY-KQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPI 107
           MLLY KQKKNQN KGNR+LIS+ VLGSAGPIRF+  E+ LVA VIDTALK YAREGRLP+
Sbjct: 1   MLLYNKQKKNQNAKGNRILISVTVLGSAGPIRFVAYEDDLVASVIDTALKGYAREGRLPL 60

Query: 108 LGSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRK 167
           LGSD +DF LYCP  GP+ALS WD IGS GARNF LC+KP+ +K  E    +       +
Sbjct: 61  LGSDFNDFLLYCPMVGPEALSTWDAIGSLGARNFMLCRKPEEKKVEESNGRSDSTINGAR 120

Query: 168 ASGSWKSWINKSLNMKIYSH 187
             GS K+WINKS N+K+ SH
Sbjct: 121 KGGSLKAWINKSFNLKVSSH 140

[Close]

BLAST of Carg25239 vs. TAIR10
Match: AT1G23150.1 (unknown protein)

HSP 1 Score: 175.6 bits (444), Expect = 2.8e-44
Identity = 91/142 (64.08%), Postives = 105/142 (73.94%), Query Frame = 0


Query: 48  MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 107
           MLLYK KKNQ VKGNR+LIS+  LGSAGPIRF+ +E  LVA VIDTALK YAREGRLPIL
Sbjct: 1   MLLYK-KKNQIVKGNRILISVTFLGSAGPIRFVANEGDLVASVIDTALKCYAREGRLPIL 60

Query: 108 GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIH--- 167
           GSD +DF  YCP  GP ALSPW+ IGS G RNF LCKK   EK  E+ K  S   I+   
Sbjct: 61  GSDFNDFVFYCPMVGPGALSPWEAIGSVGVRNFMLCKKKPEEKKVEEDKGRSNFPINGAR 120

Query: 168 RKASGSWKSWINKSLNMKIYSH 187
           + A GS+K+WINKSL +K+ +H
Sbjct: 121 KGAGGSFKAWINKSLRLKVTTH 141

[Close]

BLAST of Carg25239 vs. TAIR10
Match: AT5G37730.1 (unknown protein)

HSP 1 Score: 99.4 bits (246), Expect = 2.5e-21
Identity = 51/115 (44.35%), Postives = 72/115 (62.61%), Query Frame = 0


Query: 55  KNQNVKG------NRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPILG 114
           +N+NVKG       +LL+S+NVLGS GPIRF+ +E+  V+  I+T LK+YAR+GR+P+LG
Sbjct: 3   RNENVKGVMKRKNKKLLVSVNVLGSVGPIRFLANEDDEVSSAINTTLKAYARQGRIPVLG 62

Query: 115 SDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAI 164
            D+ +F  Y  +AG + L P + IGS    NF +CKK        +G   SR  I
Sbjct: 63  FDVDNFIFYSINAGFNTLHPQEKIGSMDVTNFLMCKKEPRPLEKVEGIRESRARI 117

[Close]

BLAST of Carg25239 vs. TAIR10
Match: AT1G70782.1 (conserved peptide upstream open reading frame 28)

HSP 1 Score: 57.8 bits (138), Expect = 8.4e-09
Identity = 29/48 (60.42%), Postives = 32/48 (66.67%), Query Frame = 0


Query: 1  MVEENSSSSNYMRSLLDSRASARLPLSAFSSFAFGSCKEGWYYRCLGM 49
          MVE N     +  SL   RAS  LPLS  S FAFGSCKEGWY+RCLG+
Sbjct: 1  MVETNPIGGKFTLSLSIKRASFSLPLSTSSVFAFGSCKEGWYFRCLGL 48

[Close]

BLAST of Carg25239 vs. TAIR10
Match: AT2G27830.1 (unknown protein)

HSP 1 Score: 57.0 bits (136), Expect = 1.4e-08
Identity = 29/86 (33.72%), Postives = 51/86 (59.30%), Query Frame = 0


Query: 63  RLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL-GSDLHDFQLYCPSA 122
           +LL+++ V GS G ++ I+S E  V+D+ID A++ Y +E R P L  S+   F L+    
Sbjct: 71  KLLLNVTVQGSLGAVQIIISPESTVSDLIDAAVRQYVKEARRPFLPESEPSRFDLHYSQF 130

Query: 123 GPDALSPWDTIGSHGARNFTLCKKPQ 148
             +++   + + S G+RNF LC + +
Sbjct: 131 SLESIVRDEKLISLGSRNFFLCGRKE 156

[Close]

BLAST of Carg25239 vs. Swiss-Prot
Match: sp|Q56XJ7|Y4276_ARATH (Uncharacterized protein At4g22758 OS=Arabidopsis thaliana OX=3702 GN=At4g22758 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.2e-04
Identity = 31/93 (33.33%), Postives = 47/93 (50.54%), Query Frame = 0


Query: 58  NVKGN-----RLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPILGSDLH 117
           N +GN     +++IS+ V GS GP+R +V     V + I   +  Y +EGR P L  D  
Sbjct: 113 NQEGNTKEAPKVIISVAVEGSPGPVRAMVKLSCNVEETIKIVVDKYCKEGRTPKLDRD-S 172

Query: 118 DFQLYCPSAGPDALSPWDTIGSHGARNFTLCKK 146
            F+L+        L   + IG  G+R+F + KK
Sbjct: 173 AFELHQSHFSIQCLEKREIIGELGSRSFYMRKK 204

[Close]

BLAST of Carg25239 vs. TrEMBL
Match: tr|A0A2N9ETJ3|A0A2N9ETJ3_FAGSY (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5995 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 9.1e-66
Identity = 135/189 (71.43%), Postives = 151/189 (79.89%), Query Frame = 0


Query: 4   ENSSSSNYMRSLLDSRASARLPLSAFSSFAFGSCKEGWYYRCLG------MLLYKQKKNQ 63
           E SSSSN M SL  +RASA +  +   + AFGSCKEGWYYRCLG      MLLYK KKNQ
Sbjct: 3   EISSSSNLMLSLFQARASAVIAFA--FAVAFGSCKEGWYYRCLGYLFFATMLLYKPKKNQ 62

Query: 64  NVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPILGSDLHDFQLY 123
           N K NRLLISI VLGSAGPIRF+V+E++LVA VIDTALKSYAREGRLPILGS+L++F LY
Sbjct: 63  NAKANRLLISITVLGSAGPIRFVVNEDELVAAVIDTALKSYAREGRLPILGSNLNEFILY 122

Query: 124 CPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKASGSWKSWINK 183
           CP+AGPDALSPWDTIGS G RNF LCKKPQ  K   D + + RP I RK SGSWK+WINK
Sbjct: 123 CPNAGPDALSPWDTIGSQGVRNFMLCKKPQPVKMAGDDETSIRP-ISRKGSGSWKAWINK 182

Query: 184 SLNMKIYSH 187
           SLN+KIYSH
Sbjct: 183 SLNLKIYSH 188

[Close]

BLAST of Carg25239 vs. TrEMBL
Match: tr|A0A0A0KUW8|A0A0A0KUW8_CUCSA (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G569870 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 2.5e-63
Identity = 122/139 (87.77%), Postives = 128/139 (92.09%), Query Frame = 0


Query: 48  MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 107
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIV+EEQLVA VIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 108 GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKA 167
           GSDL DFQLYCP+ GPDALSPWDTIGSHGARNF LCKKPQ EK  E+GK  S PAI RK+
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVPEEGKTPSGPAIPRKS 120

Query: 168 SGSWKSWINKSLNMKIYSH 187
           +GSWKSWINKSLN+KIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

[Close]

BLAST of Carg25239 vs. TrEMBL
Match: tr|A0A1S4DSB9|A0A1S4DSB9_CUCME (uncharacterized protein At4g22758-like OS=Cucumis melo OX=3656 GN=LOC107990297 PE=4 SV=1)

HSP 1 Score: 248.4 bits (633), Expect = 1.2e-62
Identity = 120/139 (86.33%), Postives = 127/139 (91.37%), Query Frame = 0


Query: 48  MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 107
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIV+EEQLVA VIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 108 GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKA 167
           GSDL DFQLYCP+ GPDALSPWDTIGSHGARNF LCKKPQ EK  E+GK+   P I RK+
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVSEEGKSPPGPTIPRKS 120

Query: 168 SGSWKSWINKSLNMKIYSH 187
           +GSWKSWINKSLN+KIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

[Close]

BLAST of Carg25239 vs. TrEMBL
Match: tr|A0A0B0NPI3|A0A0B0NPI3_GOSAR (Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_02623 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.2e-54
Identity = 108/139 (77.70%), Postives = 123/139 (88.49%), Query Frame = 0


Query: 48  MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 107
           MLLYKQKKNQ  KGNRLLIS+ VLGSAGPIRF+V+EE+LVA VIDTALKSYAREGRLP+L
Sbjct: 1   MLLYKQKKNQGPKGNRLLISVTVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVL 60

Query: 108 GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKA 167
           GS+L+DF LYCPSAG DALSPW+TIGS GARNF LCKKP+ EK  +DGKAA   +I+RKA
Sbjct: 61  GSNLNDFLLYCPSAGSDALSPWETIGSQGARNFMLCKKPRTEKVKDDGKAAE--SINRKA 120

Query: 168 SGSWKSWINKSLNMKIYSH 187
           SG+WK+W NKSLN+KI SH
Sbjct: 121 SGNWKAWFNKSLNLKISSH 137

[Close]

BLAST of Carg25239 vs. TrEMBL
Match: tr|A0A1U8KLD9|A0A1U8KLD9_GOSHI (uncharacterized protein At4g22758-like OS=Gossypium hirsutum OX=3635 GN=LOC107918216 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.2e-54
Identity = 108/139 (77.70%), Postives = 123/139 (88.49%), Query Frame = 0


Query: 48  MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVSEEQLVADVIDTALKSYAREGRLPIL 107
           MLLYKQKKNQ  KGNRLLIS+ VLGSAGPIRF+V+EE+LVA VIDTALKSYAREGRLP+L
Sbjct: 1   MLLYKQKKNQGPKGNRLLISVTVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVL 60

Query: 108 GSDLHDFQLYCPSAGPDALSPWDTIGSHGARNFTLCKKPQAEKAGEDGKAASRPAIHRKA 167
           GS+L+DF LYCPSAG DALSPW+TIGS GARNF LCKKP+ EK  +DGKAA   +I+RKA
Sbjct: 61  GSNLNDFLLYCPSAGSDALSPWETIGSQGARNFMLCKKPRTEKVKDDGKAAE--SINRKA 120

Query: 168 SGSWKSWINKSLNMKIYSH 187
           SG+WK+W NKSLN+KI SH
Sbjct: 121 SGNWKAWFNKSLNLKISSH 137

The following BLAST results are available for this feature:

BLAST of Carg25239 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022959923.1	2.3e-73	100.00	uncharacterized protein At4g22758-like [Cucurbita moschata]	[more]
XP_023521148.1	6.8e-73	99.28	uncharacterized protein At4g22758-like [Cucurbita pepo subsp. pepo] >XP_02352114...	[more]
XP_022990881.1	4.4e-72	98.56	uncharacterized protein At4g22758 [Cucurbita maxima]	[more]
XP_023540757.1	5.0e-68	84.57	uncharacterized protein At4g22758-like [Cucurbita pepo subsp. pepo]	[more]
XP_004150595.1	3.7e-63	87.77	PREDICTED: uncharacterized protein At4g22758-like [Cucumis sativus] >KGN51491.1 ...	[more]

BLAST of Carg25239 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70780.1	1.0e-46	64.29	unknown protein	[more]
AT1G23150.1	2.8e-44	64.08	unknown protein	[more]
AT5G37730.1	2.5e-21	44.35	unknown protein	[more]
AT1G70782.1	8.4e-09	60.42	conserved peptide upstream open reading frame 28	[more]
AT2G27830.1	1.4e-08	33.72	unknown protein	[more]

BLAST of Carg25239 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q56XJ7\|Y4276_ARATH	1.2e-04	33.33	Uncharacterized protein At4g22758 OS=Arabidopsis thaliana OX=3702 GN=At4g22758 P...	[more]

BLAST of Carg25239 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A2N9ETJ3\|A0A2N9ETJ3_FAGSY	9.1e-66	71.43	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS5995 PE=4 SV=1	[more]
tr\|A0A0A0KUW8\|A0A0A0KUW8_CUCSA	2.5e-63	87.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G569870 PE=4 SV=1	[more]
tr\|A0A1S4DSB9\|A0A1S4DSB9_CUCME	1.2e-62	86.33	uncharacterized protein At4g22758-like OS=Cucumis melo OX=3656 GN=LOC107990297 P...	[more]
tr\|A0A0B0NPI3\|A0A0B0NPI3_GOSAR	1.2e-54	77.70	Uncharacterized protein OS=Gossypium arboreum OX=29729 GN=F383_02623 PE=4 SV=1	[more]
tr\|A0A1U8KLD9\|A0A1U8KLD9_GOSHI	1.2e-54	77.70	uncharacterized protein At4g22758-like OS=Gossypium hirsutum OX=3635 GN=LOC10791...	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg25239-RA	Carg25239-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33270:SF5	SUBFAMILY NOT NAMED	coord: 31..186
None	No IPR available	PANTHER	PTHR33270	FAMILY NOT NAMED	coord: 31..186

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg25239	Cla003930	Watermelon (97103) v1	carwmB0884
Carg25239	Csa5G569870	Cucumber (Chinese Long) v2	carcuB0893
Carg25239	MELO3C005300	Melon (DHL92) v3.5.1	carmeB0867
Carg25239	ClCG01G006290	Watermelon (Charleston Gray)	carwcgB0857
Carg25239	CSPI05G19530	Wild cucumber (PI 183967)	carcpiB0913
Carg25239	Cucsa.280330	Cucumber (Gy14) v1	carcgyB1000
Carg25239	CmaCh04G021240	Cucurbita maxima (Rimu)	carcmaB1220
Carg25239	CmoCh04G022220	Cucurbita moschata (Rifu)	carcmoB1189
Carg25239	Lsi09G006640	Bottle gourd (USVL1VR-Ls)	carlsiB800
Carg25239	Cp4.1LG01g18480	Cucurbita pepo (Zucchini)	carcpeB1228
Carg25239	CsGy5G019040	Cucumber (Gy14) v2	carcgybB0866
Carg25239	MELO3C005300.2	Melon (DHL92) v3.6.1	carmedB0876
Carg25239	CsaV3_5G028370	Cucumber (Chinese Long) v3	carcucB0917
Carg25239	Cla97C01G006600	Watermelon (97103) v2	carwmbB0920
Carg25239	Bhi12G000788	Wax gourd	carwgoB1028

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Carg25239	Cucumber (Gy14) v2	carcgybB0867
Carg25239	Wild cucumber (PI 183967)	carcpiB0915
Carg25239	Cucumber (Chinese Long) v2	carcuB0895
Carg25239	Bottle gourd (USVL1VR-Ls)	carlsiB799
Carg25239	Melon (DHL92) v3.5.1	carmeB0869
Carg25239	Watermelon (Charleston Gray)	carwcgB0856
Carg25239	Watermelon (97103) v1	carwmB0883
Carg25239	Watermelon (97103) v2	carwmbB0919