CmoCh15G009980 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G009980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Senescence-associated protein
Location	Cmo_Chr15 : 5378409 .. 5379482 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexonthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCTGTACAAGCAGAAGAAGAATCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCATCAATGTGCTCGGCAGTGCTGGTCCGATTCGATTTATTGTGAACGAGGAGCAACTTGTTGCTGCTGTTATTGATACAGCATTGAAATCCTACGCGCGTGAGGGCCGGCTGCCGATTCTTGGGTCCGATCTCAGAGATTTCCAGCTTTACTGCCCAATTGCTGGACCAGATGGTAATTTAAACCCTGTTTTTAGACAATTCAATCGTGTTTCGTGATAATTATCCTTTTCAATACTTTTGCATGCTTCCAATATGAAGTGGCTGAAGAAATTTGTGATGCGATTCATAAATTTGTTCTCTATTTCAATTTCGTGTCTTAATTTTGTGATGGAAATCTCTGTTCTGGGGGCTCCCCCCCTTAAAATATTGTTTATTGGTATTGTGTTGGGATCTCTGTTTCCTTTCTCTAGAATCCTCTGATAACAATATTAAAACAAATCTGGGATTTCGTTTTCTCATGTGGTTTTGAAATTTTTCTGCAGCCTTGAGTCCATGGGACACAATTGGATCGCACGGATCCCGGAACTTCATGTTGTGCAAGAAACCACAGCCAGAGAAAGTGGGAGAACATGGAAATTCGCCACCGGAGCCAAGTATCCCCCGCAAAGGCACAGGAAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGAATCCGCGCGACAACGAGGATAATGATGGTTGAATGCTCTATGGAAATTAGGTTGGTTTTAGTTGTTATTTGGGTCAGTTGTTGTGTGGACCATTGCAATTTGGTTTTTATCGCTTTTGTTTGTTGTCTTGTCGGACACCGTGTTTCAACTTTCATAAAGTTGGGTGGGTTCCCCGTTTTTCTTCTGGAAATAAACAGTGTAATCCATAGAATTTATCCCTTTCAAATAAATTACATCTTGGATTTTTAATTGCCACGCATTGTTCATGTTGCTAAGTTTCTGGAAAGAAGAAGAAAAAGGCCGTATGCTTCTTTATGCTTTATGCTTTGAACTCTTGATATTCG

mRNA sequence

ATGTTGCTGTACAAGCAGAAGAAGAATCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCATCAATGTGCTCGGCAGTGCTGGTCCGATTCGATTTATTGTGAACGAGGAGCAACTTGTTGCTGCTGTTATTGATACAGCATTGAAATCCTACGCGCGTGAGGGCCGGCTGCCGATTCTTGGGTCCGATCTCAGAGATTTCCAGCTTTACTGCCCAATTGCTGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGATCCCGGAACTTCATGTTGTGCAAGAAACCACAGCCAGAGAAAGTGGGAGAACATGGAAATTCGCCACCGGAGCCAAGTATCCCCCGCAAAGGCACAGGAAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGAATCCGCGCGACAACGAGGATAATGATGGTTGAATGCTCTATGGAAATTAGGTTGGTTTTAGTTGTTATTTGGGTCAGTTGTTGTGTGGACCATTGCAATTTGGTTTTTATCGCTTTTGTTTGTTGTCTTGTCGGACACCGTGTTTCAACTTTCATAAAGTTGGGTGGGTTCCCCGTTTTTCTTCTGGAAATAAACAGTGTAATCCATAGAATTTATCCCTTTCAAATAAATTACATCTTGGATTTTTAATTGCCACGCATTGTTCATGTTGCTAAGTTTCTGGAAAGAAGAAGAAAAAGGCCGTATGCTTCTTTATGCTTTATGCTTTGAACTCTTGATATTCG

Coding sequence (CDS)

ATGTTGCTGTACAAGCAGAAGAAGAATCAGAATGTTAAGGGCAACAGGCTCTTGATCAGCATCAATGTGCTCGGCAGTGCTGGTCCGATTCGATTTATTGTGAACGAGGAGCAACTTGTTGCTGCTGTTATTGATACAGCATTGAAATCCTACGCGCGTGAGGGCCGGCTGCCGATTCTTGGGTCCGATCTCAGAGATTTCCAGCTTTACTGCCCAATTGCTGGACCAGATGCCTTGAGTCCATGGGACACAATTGGATCGCACGGATCCCGGAACTTCATGTTGTGCAAGAAACCACAGCCAGAGAAAGTGGGAGAACATGGAAATTCGCCACCGGAGCCAAGTATCCCCCGCAAAGGCACAGGAAGCTGGAAGTCATGGATCAACAAGTCTCTGAATATGAAAATCTATTCCCATTGA

Homology

[Close]

BLAST of CmoCh15G009980 vs. TrEMBL
Match: A0A0A0KUW8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G569870 PE=4 SV=1)

HSP 1 Score: 261.9 bits (668), Expect = 4.3e-67
Identity = 126/139 (90.65%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 61  GSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRKG 120
           GSDLRDFQLYCP  GPDALSPWDTIGSHG+RNFMLCKKPQPEKV E G +P  P+IPRK 
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVPEEGKTPSGPAIPRKS 120

Query: 121 TGSWKSWINKSLNMKIYSH 140
            GSWKSWINKSLN+KIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

[Close]

BLAST of CmoCh15G009980 vs. TrEMBL
Match: M5XHL6_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013143mg PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 8.5e-55
Identity = 110/140 (78.57%), Postives = 121/140 (86.43%), Query Frame = 1


Query: 1   MLLYKQKKNQN-VKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPI 60
           MLLYKQKKN N  KGNRLLISI VLGSAGPIRF+VNEE+LVAAVIDTALKSYAREGRLP+
Sbjct: 1   MLLYKQKKNPNSAKGNRLLISITVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPV 60

Query: 61  LGSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRK 120
           LGSDL DF LYCP AGPDALSPWDTIG+ G+RNFMLCKKPQP K+    +  P  +I RK
Sbjct: 61  LGSDLNDFLLYCPNAGPDALSPWDTIGAQGARNFMLCKKPQPVKM--DSDEIPAAAITRK 120

Query: 121 GTGSWKSWINKSLNMKIYSH 140
           G+GSWK+WINKSLN+KI SH
Sbjct: 121 GSGSWKAWINKSLNLKISSH 138

[Close]

BLAST of CmoCh15G009980 vs. TrEMBL
Match: A0A0B0NPI3_GOSAR (Uncharacterized protein OS=Gossypium arboreum GN=F383_02623 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 3.6e-53
Identity = 105/139 (75.54%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQ  KGNRLLIS+ VLGSAGPIRF+VNEE+LVAAVIDTALKSYAREGRLP+L
Sbjct: 1   MLLYKQKKNQGPKGNRLLISVTVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVL 60

Query: 61  GSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRKG 120
           GS+L DF LYCP AG DALSPW+TIGS G+RNFMLCKKP+ EKV + G +    SI RK 
Sbjct: 61  GSNLNDFLLYCPSAGSDALSPWETIGSQGARNFMLCKKPRTEKVKDDGKA--AESINRKA 120

Query: 121 TGSWKSWINKSLNMKIYSH 140
           +G+WK+W NKSLN+KI SH
Sbjct: 121 SGNWKAWFNKSLNLKISSH 137

[Close]

BLAST of CmoCh15G009980 vs. TrEMBL
Match: A0A059D744_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02935 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 4.7e-53
Identity = 104/139 (74.82%), Postives = 118/139 (84.89%), Query Frame = 1


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQ+ KGNRLLISINVLGSAGPIRF+V EE+LVAAVIDTALKSYAREGRLP+L
Sbjct: 1   MLLYKQKKNQSAKGNRLLISINVLGSAGPIRFVVGEEELVAAVIDTALKSYAREGRLPVL 60

Query: 61  GSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRKG 120
           GSDL DF LYCP +G DALSPWD IGS G+RNF+LCKKP+ + V +   S P+  I RKG
Sbjct: 61  GSDLNDFLLYCPTSGSDALSPWDMIGSPGARNFLLCKKPKTDVVADDRRS-PDAGIARKG 120

Query: 121 TGSWKSWINKSLNMKIYSH 140
            GSWKSWINKS ++K+ SH
Sbjct: 121 NGSWKSWINKSFSLKVSSH 138

[Close]

BLAST of CmoCh15G009980 vs. TrEMBL
Match: A0A0D2QER4_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_002G177100 PE=4 SV=1)

HSP 1 Score: 213.8 bits (543), Expect = 1.4e-52
Identity = 104/139 (74.82%), Postives = 119/139 (85.61%), Query Frame = 1


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKK+Q  KGNRLLIS+ VLGSAGPIRF+VNEE+LVAAVIDTALKSYAREGRLP+L
Sbjct: 1   MLLYKQKKSQGPKGNRLLISVTVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPVL 60

Query: 61  GSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRKG 120
           GS+L DF LYCP AG DALSPW+TIGS G+RNFMLCKKP+ EKV + G +    SI RK 
Sbjct: 61  GSNLNDFLLYCPSAGSDALSPWETIGSQGARNFMLCKKPRTEKVKDDGKA--AESINRKA 120

Query: 121 TGSWKSWINKSLNMKIYSH 140
           +G+WK+W NKSLN+KI SH
Sbjct: 121 SGNWKAWFNKSLNLKISSH 137

[Close]

BLAST of CmoCh15G009980 vs. TAIR10
Match: AT1G70780.1 (AT1G70780.1 unknown protein)

HSP 1 Score: 188.7 bits (478), Expect = 2.4e-48
Identity = 96/141 (68.09%), Postives = 113/141 (80.14%), Query Frame = 1


Query: 1   MLLY-KQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPI 60
           MLLY KQKKNQN KGNR+LIS+ VLGSAGPIRF+  E+ LVA+VIDTALK YAREGRLP+
Sbjct: 1   MLLYNKQKKNQNAKGNRILISVTVLGSAGPIRFVAYEDDLVASVIDTALKGYAREGRLPL 60

Query: 61  LGSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGE-HGNSPPEPSIPR 120
           LGSD  DF LYCP+ GP+ALS WD IGS G+RNFMLC+KP+ +KV E +G S    +  R
Sbjct: 61  LGSDFNDFLLYCPMVGPEALSTWDAIGSLGARNFMLCRKPEEKKVEESNGRSDSTINGAR 120

Query: 121 KGTGSWKSWINKSLNMKIYSH 140
           KG GS K+WINKS N+K+ SH
Sbjct: 121 KG-GSLKAWINKSFNLKVSSH 140

[Close]

BLAST of CmoCh15G009980 vs. TAIR10
Match: AT1G23150.1 (AT1G23150.1 unknown protein)

HSP 1 Score: 176.0 bits (445), Expect = 1.6e-44
Identity = 95/142 (66.90%), Postives = 109/142 (76.76%), Query Frame = 1


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYK KKNQ VKGNR+LIS+  LGSAGPIRF+ NE  LVA+VIDTALK YAREGRLPIL
Sbjct: 1   MLLYK-KKNQIVKGNRILISVTFLGSAGPIRFVANEGDLVASVIDTALKCYAREGRLPIL 60

Query: 61  GSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLC-KKPQPEKVGE-HGNSPPEPSIPR 120
           GSD  DF  YCP+ GP ALSPW+ IGS G RNFMLC KKP+ +KV E  G S    +  R
Sbjct: 61  GSDFNDFVFYCPMVGPGALSPWEAIGSVGVRNFMLCKKKPEEKKVEEDKGRSNFPINGAR 120

Query: 121 KGT-GSWKSWINKSLNMKIYSH 140
           KG  GS+K+WINKSL +K+ +H
Sbjct: 121 KGAGGSFKAWINKSLRLKVTTH 141

[Close]

BLAST of CmoCh15G009980 vs. TAIR10
Match: AT5G37730.1 (AT5G37730.1 unknown protein)

HSP 1 Score: 102.1 bits (253), Expect = 2.9e-22
Identity = 53/105 (50.48%), Postives = 74/105 (70.48%), Query Frame = 1


Query: 8   KNQNVKG------NRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPILG 67
           +N+NVKG       +LL+S+NVLGS GPIRF+ NE+  V++ I+T LK+YAR+GR+P+LG
Sbjct: 3   RNENVKGVMKRKNKKLLVSVNVLGSVGPIRFLANEDDEVSSAINTTLKAYARQGRIPVLG 62

Query: 68  SDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKK-PQP-EKV 105
            D+ +F  Y   AG + L P + IGS    NF++CKK P+P EKV
Sbjct: 63  FDVDNFIFYSINAGFNTLHPQEKIGSMDVTNFLMCKKEPRPLEKV 107

[Close]

BLAST of CmoCh15G009980 vs. TAIR10
Match: AT2G01554.1 (AT2G01554.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-08
Identity = 43/141 (30.50%), Postives = 62/141 (43.97%), Query Frame = 1


Query: 2   LLYKQKKNQNVKG---NRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLP 61
           +LY  K  +N K    NR L+SINVLGSAG                      +    ++P
Sbjct: 1   MLYNNKHQRNQKSKTTNRFLVSINVLGSAG----------------------FHFSDQIP 60

Query: 62  ILGSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPR 121
                +    L  P+ G         IGS GSRNF+L  K + + + +   S    +  R
Sbjct: 61  AFSDFIA---LTVPLKGK--------IGSTGSRNFVLSNKLETQNLED---SMMTTTTTR 105

Query: 122 KGTGSWKSWINKSLNMKIYSH 140
           K +G WK+W+NKS  + + SH
Sbjct: 121 KTSGRWKAWLNKSFGLMVPSH 105

[Close]

BLAST of CmoCh15G009980 vs. TAIR10
Match: AT2G27830.1 (AT2G27830.1 unknown protein)

HSP 1 Score: 54.3 bits (129), Expect = 7.0e-08
Identity = 28/86 (32.56%), Postives = 50/86 (58.14%), Query Frame = 1


Query: 16  RLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL-GSDLRDFQLYCPIA 75
           +LL+++ V GS G ++ I++ E  V+ +ID A++ Y +E R P L  S+   F L+    
Sbjct: 71  KLLLNVTVQGSLGAVQIIISPESTVSDLIDAAVRQYVKEARRPFLPESEPSRFDLHYSQF 130

Query: 76  GPDALSPWDTIGSHGSRNFMLCKKPQ 101
             +++   + + S GSRNF LC + +
Sbjct: 131 SLESIVRDEKLISLGSRNFFLCGRKE 156

[Close]

BLAST of CmoCh15G009980 vs. NCBI nr
Match: gi|659072856|ref|XP_008467130.1| (PREDICTED: uncharacterized protein LOC103504558 [Cucumis melo])

HSP 1 Score: 266.9 bits (681), Expect = 1.9e-68
Identity = 128/139 (92.09%), Postives = 131/139 (94.24%), Query Frame = 1


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 61  GSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRKG 120
           GSDLRDFQLYCP  GPDALSPWDTIGSHG+RNFMLCKKPQPEKV E G SPP P+IPRK 
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVSEEGKSPPGPTIPRKS 120

Query: 121 TGSWKSWINKSLNMKIYSH 140
            GSWKSWINKSLN+KIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

[Close]

BLAST of CmoCh15G009980 vs. NCBI nr
Match: gi|449465759|ref|XP_004150595.1| (PREDICTED: uncharacterized protein At4g22758-like [Cucumis sativus])

HSP 1 Score: 261.9 bits (668), Expect = 6.2e-67
Identity = 126/139 (90.65%), Postives = 130/139 (93.53%), Query Frame = 1


Query: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60
           MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL
Sbjct: 1   MLLYKQKKNQNVKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPIL 60

Query: 61  GSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRKG 120
           GSDLRDFQLYCP  GPDALSPWDTIGSHG+RNFMLCKKPQPEKV E G +P  P+IPRK 
Sbjct: 61  GSDLRDFQLYCPNTGPDALSPWDTIGSHGARNFMLCKKPQPEKVPEEGKTPSGPAIPRKS 120

Query: 121 TGSWKSWINKSLNMKIYSH 140
            GSWKSWINKSLN+KIYSH
Sbjct: 121 AGSWKSWINKSLNLKIYSH 139

[Close]

BLAST of CmoCh15G009980 vs. NCBI nr
Match: gi|596205660|ref|XP_007223777.1| (hypothetical protein PRUPE_ppa013143mg [Prunus persica])

HSP 1 Score: 221.1 bits (562), Expect = 1.2e-54
Identity = 110/140 (78.57%), Postives = 121/140 (86.43%), Query Frame = 1


Query: 1   MLLYKQKKNQN-VKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPI 60
           MLLYKQKKN N  KGNRLLISI VLGSAGPIRF+VNEE+LVAAVIDTALKSYAREGRLP+
Sbjct: 1   MLLYKQKKNPNSAKGNRLLISITVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPV 60

Query: 61  LGSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRK 120
           LGSDL DF LYCP AGPDALSPWDTIG+ G+RNFMLCKKPQP K+    +  P  +I RK
Sbjct: 61  LGSDLNDFLLYCPNAGPDALSPWDTIGAQGARNFMLCKKPQPVKM--DSDEIPAAAITRK 120

Query: 121 GTGSWKSWINKSLNMKIYSH 140
           G+GSWK+WINKSLN+KI SH
Sbjct: 121 GSGSWKAWINKSLNLKISSH 138

[Close]

BLAST of CmoCh15G009980 vs. NCBI nr
Match: gi|645229338|ref|XP_008221421.1| (PREDICTED: uncharacterized protein LOC103321407 [Prunus mume])

HSP 1 Score: 219.9 bits (559), Expect = 2.7e-54
Identity = 109/140 (77.86%), Postives = 121/140 (86.43%), Query Frame = 1


Query: 1   MLLYKQKKNQN-VKGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPI 60
           MLLYKQKKN N  KGNRLLISI VLGSAGPIRF+VNEE+LVAAVIDTALKSYAREGRLP+
Sbjct: 1   MLLYKQKKNPNSAKGNRLLISITVLGSAGPIRFVVNEEELVAAVIDTALKSYAREGRLPV 60

Query: 61  LGSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRK 120
           LGSDL DF LYCP +GPDALSPWDTIG+ G+RNFMLCKKPQP K+    +  P  +I RK
Sbjct: 61  LGSDLNDFLLYCPNSGPDALSPWDTIGAQGARNFMLCKKPQPVKM--DSDEIPAAAITRK 120

Query: 121 GTGSWKSWINKSLNMKIYSH 140
           G+GSWK+WINKSLN+KI SH
Sbjct: 121 GSGSWKAWINKSLNLKISSH 138

[Close]

BLAST of CmoCh15G009980 vs. NCBI nr
Match: gi|470122718|ref|XP_004297386.1| (PREDICTED: uncharacterized protein At4g22758 [Fragaria vesca subsp. vesca])

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-53
Identity = 110/140 (78.57%), Postives = 119/140 (85.00%), Query Frame = 1


Query: 1   MLLYKQKKNQNV-KGNRLLISINVLGSAGPIRFIVNEEQLVAAVIDTALKSYAREGRLPI 60
           MLLYKQKK+Q   KGNR LISI VLGSAGPIRF+VNEE LVAAVIDTALKSYAREGRLPI
Sbjct: 1   MLLYKQKKSQAAAKGNRFLISITVLGSAGPIRFVVNEEALVAAVIDTALKSYAREGRLPI 60

Query: 61  LGSDLRDFQLYCPIAGPDALSPWDTIGSHGSRNFMLCKKPQPEKVGEHGNSPPEPSIPRK 120
           LGSDL +F LYCP AGPDALSPWDTIGS GSRNFMLCKKPQP K+ +     P  +I RK
Sbjct: 61  LGSDLNEFMLYCPTAGPDALSPWDTIGSQGSRNFMLCKKPQPVKMVD--AEIPAATISRK 120

Query: 121 GTGSWKSWINKSLNMKIYSH 140
           G+GSWK+WINKSLN+KI SH
Sbjct: 121 GSGSWKAWINKSLNLKISSH 138

The following BLAST results are available for this feature:

BLAST of CmoCh15G009980 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G009980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KUW8_CUCSA	4.3e-67	90.65	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G569870 PE=4 SV=1	[more]
M5XHL6_PRUPE	8.5e-55	78.57	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa013143mg PE=4 SV=1	[more]
A0A0B0NPI3_GOSAR	3.6e-53	75.54	Uncharacterized protein OS=Gossypium arboreum GN=F383_02623 PE=4 SV=1	[more]
A0A059D744_EUCGR	4.7e-53	74.82	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_B02935 PE=4 SV=1	[more]
A0A0D2QER4_GOSRA	1.4e-52	74.82	Uncharacterized protein OS=Gossypium raimondii GN=B456_002G177100 PE=4 SV=1	[more]

BLAST of CmoCh15G009980 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G70780.1	2.4e-48	68.09	unknown protein	[more]
AT1G23150.1	1.6e-44	66.90	unknown protein	[more]
AT5G37730.1	2.9e-22	50.48	unknown protein	[more]
AT2G01554.1	7.0e-08	30.50	unknown protein	[more]
AT2G27830.1	7.0e-08	32.56	unknown protein	[more]

BLAST of CmoCh15G009980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659072856\|ref\|XP_008467130.1\|	1.9e-68	92.09	PREDICTED: uncharacterized protein LOC103504558 [Cucumis melo]	[more]
gi\|449465759\|ref\|XP_004150595.1\|	6.2e-67	90.65	PREDICTED: uncharacterized protein At4g22758-like [Cucumis sativus]	[more]
gi\|596205660\|ref\|XP_007223777.1\|	1.2e-54	78.57	hypothetical protein PRUPE_ppa013143mg [Prunus persica]	[more]
gi\|645229338\|ref\|XP_008221421.1\|	2.7e-54	77.86	PREDICTED: uncharacterized protein LOC103321407 [Prunus mume]	[more]
gi\|470122718\|ref\|XP_004297386.1\|	1.8e-53	78.57	PREDICTED: uncharacterized protein At4g22758 [Fragaria vesca subsp. vesca]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G009980.1	CmoCh15G009980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33270	FAMILY NOT NAMED	coord: 1..139 score: 3.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G009980	Cucsa.280330	Cucumber (Gy14) v1	cgycmoB0771
CmoCh15G009980	CmaCh04G021250	Cucurbita maxima (Rimu)	cmacmoB694
CmoCh15G009980	Cla003930	Watermelon (97103) v1	cmowmB263
CmoCh15G009980	Csa5G569870	Cucumber (Chinese Long) v2	cmocuB289
CmoCh15G009980	MELO3C005301	Melon (DHL92) v3.5.1	cmomeB245
CmoCh15G009980	ClCG01G006290	Watermelon (Charleston Gray)	cmowcgB245
CmoCh15G009980	CSPI05G19530	Wild cucumber (PI 183967)	cmocpiB298
CmoCh15G009980	Lsi09G006640	Bottle gourd (USVL1VR-Ls)	cmolsiB250
CmoCh15G009980	Cp4.1LG13g03650	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G009980	Cp4.1LG01g18480	Cucurbita pepo (Zucchini)	cmocpeB281
CmoCh15G009980	MELO3C005301.2	Melon (DHL92) v3.6.1	cmomedB279
CmoCh15G009980	CsaV3_5G028370	Cucumber (Chinese Long) v3	cmocucB0350
CmoCh15G009980	Cla97C01G006600	Watermelon (97103) v2	cmowmbB268
CmoCh15G009980	Bhi12G000788	Wax gourd	cmowgoB0359
CmoCh15G009980	CsGy5G019040	Cucumber (Gy14) v2	cgybcmoB586
CmoCh15G009980	Carg26340	Silver-seed gourd	carcmoB0270

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G009980	CmoCh04G022220	Cucurbita moschata (Rifu)	cmocmoB263

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G009980	Cucurbita moschata (Rifu)	cmocmoB254
CmoCh15G009980	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G009980	Cucurbita maxima (Rimu)	cmacmoB685
CmoCh15G009980	Cucurbita pepo (Zucchini)	cmocpeB273
CmoCh15G009980	Silver-seed gourd	carcmoB0578