Cla002709 (gene) Watermelon (97103) v1

Overview
NameCla002709
Typegene
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionUbiquitin-protein ligase/zinc ion binding protein (AHRD V1 *--* F6M732_WHEAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
LocationChr7 : 254627 .. 256222 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACTGTAGCTCTCAAGAAGCTCTTGTTCGATGCGTCTGTCAATCACTTGTGGTTTGCTTGCTTCTCTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGATCAAGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAATCATCAACCTGTAAATTCTGATTTATTGATCAATTTGGAGGCCAGCAACAGCTCTATGGTACTGGGACAACTTATACCTTTGTTACTCTTCTTTTTGTGCAAGATTTTTCCTGTGTCGTTAGGTGTAGTGTAGATCATATAATTGTCCCTTGTGATTGCAGTTTTTAGCACAAAAACAAATTTTGGCATGTTCTCCCTTAACCTATGTTTGTATTTTCTCGACTAGTTCTCATGGCTATTTCTTGCATATACAATACATCTGGTCGCTTTCATTTCTCCCCTTTGGAAAAGTTAAGTTAGTTTGTTTTATGGTTTTTTAACAATAAGTCACTTACCTCTCACTTTTTCTCTCTCTATGTTTGAGTGCTGCTTTTCTTTTGGTTGATTTATCTTCAAAGTTAGGGTTGTTCACAGGTTGAATTGATTTGGTTTATCTCGTAATGGGGAACTAAACCATATGTTTTGGTTTGATTCATTTGATTATATTTGAAAAAGATAAGGATGGATCATGGATGGTTTGTGCTAAATAATCAGAAACTAAACTAAAAGATGCCTTGATTAGTCTAGTTTTCACTAGGTTTAACTTTTTTCTTGTGACTACCAGTGTTCATCGGTCAGTGTTGGCCTCGCTGACCAGTGACCAATCAGTTTTTCTCAGTTGTTGATGCTCAGTTTTTGAGAAATAATTGGAAAACAGAGATGGAGAGGAAGAGAAATGGGGAGGAGGGTTTAGGGATATGGACACAAATGAGAGAGGAAGAATAGAGAAAGAATTAATTTTTTCTTGTGACTAGCGGTGTTCATCGGTCAGTCGGTGATGCTCAGTTTTTGAGAAATAATTGGAAAACAGAGATGGAGAGGAAGAGAAATGGGGAGGAGGGTTTAGGGATATGGCCACAAATGAGAGAGGAAGAATAGAGAGAGAATTAATTTTTTTTTAAACCAGCAACTGGTTTCCGCCTTTTCTTTTCTTCTAATTTTTTTTTAACGTTGGGTTGGGCGGTCGTATTTTCTATAAGAAAAAACTGACTTTGACCAATCAATCCTTGGTTGGATTTGTTTTCAGTCCAATTTTATTCCCCCCTGCTTGTGACTAAACTCTTCAATTTCTAATTGTAGCATCTTATTAGCTGTTAGTGTTGGAAATGTGATTTTGTGTTGAAAATGGGATTATGTCTCAAGTGCTTAATATCGAGCCAACATGTGATTTCTGTGCTATTGGCAGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAATTGTCCAATATGCATGGGTCCGTTGGTAGAGGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATTAGGGCTGCAATAGCCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGCACAAGCTTGGAATGA

mRNA sequence

ATGGACTGTAGCTCTCAAGAAGCTCTTGTTCGATGCGTCTGTCAATCACTTGTGGTTTGCTTGCTTCTCTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGATCAAGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAATCATCAACCTGTAAATTCTGATTTATTGATCAATTTGGAGGCCAGCAACAGCTCTATGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAATTGTCCAATATGCATGGGTCCGTTGGTAGAGGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATTAGGGCTGCAATAGCCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGCACAAGCTTGGAATGA

Coding sequence (CDS)

ATGGACTGTAGCTCTCAAGAAGCTCTTGTTCGATGCGTCTGTCAATCACTTGTGGTTTGCTTGCTTCTCTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGATCAAGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAATCATCAACCTGTAAATTCTGATTTATTGATCAATTTGGAGGCCAGCAACAGCTCTATGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAATTGTCCAATATGCATGGGTCCGTTGGTAGAGGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATTAGGGCTGCAATAGCCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGCACAAGCTTGGAATGA

Protein sequence

MDCSSQEALVRCVCQSLVVCLLLSFSHLLIVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE
Homology
[Close]
BLAST of Cla002709 vs. Swiss-Prot
Match: RN151_MOUSE (RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-09
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 1 

Query: 76  APPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRV 135
           A P + KF C +C G L   T   C HIFCK CI   +A Q+ CP CRK VT ++++ V
Sbjct: 11  ASPPDCKFLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEVTRRKMVEV 69

[Close]
BLAST of Cla002709 vs. Swiss-Prot
Match: RNF4_MOUSE (E3 ubiquitin-protein ligase RNF4 OS=Mus musculus GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-08
Identity = 40/148 (27.03%), Postives = 68/148 (45.95%), Query Frame = 1 

Query: 7   EALVRCVCQSLV-VCLLLSFSHLLIVAEERIKVSNNNRSKRRRDVSNHQPVNSD------ 66
           + +V   C+SL  V + L+ +  +++ EER +   N R + R+D ++   V+SD      
Sbjct: 48  DEIVDLTCESLEPVVVDLTHNDSVVIVEERRRPRRNGR-RLRQDHADSCVVSSDDEELSR 107

Query: 67  ---LLINLEASNSSMKVKPAPPKEP-KFNCPICMGPLVEET-------STRCGHIFCKAC 126
              + +      S+       P+     +CPICM    E         ST CGH+FC  C
Sbjct: 108 DKDVYVTTHTPRSTKDDGATGPRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC 167

Query: 127 IRAAIAVQSKCPTCRKRVTAKELIRVFL 137
           +R ++   + CPTCRK++  K    +++
Sbjct: 168 LRDSLKNANTCPTCRKKINHKRYHPIYI 194

[Close]
BLAST of Cla002709 vs. Swiss-Prot
Match: RNF4_RAT (E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-08
Identity = 43/151 (28.48%), Postives = 71/151 (47.02%), Query Frame = 1 

Query: 7   EALVRCVCQSLV-VCLLLSFSHLLIVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLE 66
           + +V   C+SL  V + L+ +  +++ EER +   N R + R+D ++   V+SD   + E
Sbjct: 48  DEIVDLTCESLEPVVVDLTHNDSVVIVEERRRPRRNGR-RLRQDHADSCVVSSD---DEE 107

Query: 67  AS-NSSMKVKPAPPKEPK------------FNCPICMGPLVEET-------STRCGHIFC 126
            S +  + V    P+  K             +CPICM    E         ST CGH+FC
Sbjct: 108 LSKDKDVYVTTHTPRSTKDEGTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFC 167

Query: 127 KACIRAAIAVQSKCPTCRKRVTAKELIRVFL 137
             C+R ++   + CPTCRK++  K    +++
Sbjct: 168 SQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194

[Close]
BLAST of Cla002709 vs. Swiss-Prot
Match: RNF4_HUMAN (E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens GN=RNF4 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-06
Identity = 32/114 (28.07%), Postives = 51/114 (44.74%), Query Frame = 1 

Query: 32  AEERIKVSNNNRSKRRRDV--SNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICM 91
           A+  +  S++    R RDV  + H P N+           +  ++P+       +CPICM
Sbjct: 88  ADSCVVSSDDEELSRDRDVYVTTHTPRNA-------RDEGATGLRPSGT----VSCPICM 147

Query: 92  GPLVEET-------STRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFL 137
               E         ST CGH+FC  C+R ++   + CPTCRK++  K    +++
Sbjct: 148 DGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 190

[Close]
BLAST of Cla002709 vs. Swiss-Prot
Match: RO52_HUMAN (E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.2e-06
Identity = 23/48 (47.92%), Postives = 25/48 (52.08%), Query Frame = 1 

Query: 85  CPICMGPLVEETSTRCGHIFCKACI-RAAIAVQSKCPTCRKRVTAKEL 132
           CPIC+ P VE  S  CGH FC+ CI +      S CP CR+R   K L
Sbjct: 16  CPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNL 63

[Close]
BLAST of Cla002709 vs. TrEMBL
Match: B7FGG8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g074240 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1 

Query: 28  LLIVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNS----SMKVKPAPPKEPKF 87
           ++  AEE+I++SNNNR+KRRR+       N DL INL+AS+S    S+K  P PPKEP F
Sbjct: 131 VMFFAEEQIRLSNNNRNKRRRESPKRSIFNCDLYINLDASSSNTMESVKKPPEPPKEPVF 190

Query: 88  NCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
            CPICMGP+VEE STRCGHIFCK+CI+AAI+ Q+KCPTCRK++T KELIRVFLP T+
Sbjct: 191 TCPICMGPMVEEMSTRCGHIFCKSCIKAAISAQAKCPTCRKKITVKELIRVFLPTTA 247

[Close]
BLAST of Cla002709 vs. TrEMBL
Match: A0A067K272_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17518 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 76/117 (64.96%), Postives = 89/117 (76.07%), Query Frame = 1 

Query: 30  IVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVK------PAPPKEPKF 89
           ++A    +++ NN +KRRR  SNH  +N +  +NLE+S SSM+        P PPKEP F
Sbjct: 110 VIAGRTTRLTYNNPNKRRRSPSNHAVINCEHYVNLESSGSSMRDNAQQLQPPPPPKEPTF 169

Query: 90  NCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
           NCPICMGP VEETST+CGHIFCKACIRAAI VQSKCPTCRK+VT KELIRVFLP TS
Sbjct: 170 NCPICMGPFVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKKVTVKELIRVFLPATS 226

[Close]
BLAST of Cla002709 vs. TrEMBL
Match: B7FMT2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g074240 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.0e-36
Identity = 74/112 (66.07%), Postives = 90/112 (80.36%), Query Frame = 1 

Query: 33  EERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNS----SMKVKPAPPKEPKFNCPIC 92
           EE+I++SNNNR+KRRR+       N DL INL+AS+S    S+K  P PPKEP F CPIC
Sbjct: 131 EEQIRLSNNNRNKRRRESPKRSIFNCDLYINLDASSSNTMESVKKPPEPPKEPVFTCPIC 190

Query: 93  MGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
           MGP+VEE STRCGHIFCK+CI+AAI+ Q+KCPTCRK++T KELIRVFLP T+
Sbjct: 191 MGPMVEEMSTRCGHIFCKSCIKAAISAQAKCPTCRKKITVKELIRVFLPTTA 242

[Close]
BLAST of Cla002709 vs. TrEMBL
Match: A0A151TMW3_CAJCA (52 kDa Ro protein OS=Cajanus cajan GN=KK1_021992 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-33
Identity = 71/109 (65.14%), Postives = 85/109 (77.98%), Query Frame = 1 

Query: 32  AEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGP 91
           +E+  +V++NN++KRRR  SN   +  D  INLE   SSMK  P PPKEP FNCPIC+GP
Sbjct: 101 SEDPTRVADNNQNKRRRQ-SNPTIIICDEYINLEGGGSSMKKPPEPPKEPVFNCPICIGP 160

Query: 92  LVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
           LVEETSTRCGHIFCK CI++AI+ Q KCPTCRK++  KELIRVFLP TS
Sbjct: 161 LVEETSTRCGHIFCKNCIKSAISAQGKCPTCRKKIVVKELIRVFLPSTS 208

[Close]
BLAST of Cla002709 vs. TrEMBL
Match: B9T3C7_RICCO (RING finger protein, putative OS=Ricinus communis GN=RCOM_1750200 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.2e-33
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 1 

Query: 43  RSKRRRDVSNHQPVNSDLLINLEASNSSMKVK-----PAPPKEPKFNCPICMGPLVEETS 102
           ++KRRR  SN   +N D  +NLE+S+SSM+       P PPKEP FNCPICMGP +EETS
Sbjct: 120 QNKRRRVSSNQTIINCDHYVNLESSSSSMRDNIQPRPPPPPKEPTFNCPICMGPFIEETS 179

Query: 103 TRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
           T+CGHIFCKACI+ AI VQSKCPTCRKRVT KELIRVFLP TS
Sbjct: 180 TKCGHIFCKACIKTAIGVQSKCPTCRKRVTIKELIRVFLPATS 222

[Close]
BLAST of Cla002709 vs. NCBI nr
Match: gi|449453284|ref|XP_004144388.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 2.0e-52
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 1 

Query: 32  AEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGP 91
           AEER +VSNNNRSKRRRDVSN   VNSDLLINLEASNSSMKVKPAPPKEPKF+CPICMGP
Sbjct: 96  AEERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGP 155

Query: 92  LVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE 143
           LVEETSTRCGHIFCKACIRAAI VQSKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 156 LVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Cla002709 vs. NCBI nr
Match: gi|659120828|ref|XP_008460369.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 4.4e-52
Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 1 

Query: 32  AEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGP 91
           AEER +VSNNNRSKRRRDVSN   VNSDLLINLEASNSSMKVKPAPPKEPKF+CPICMGP
Sbjct: 96  AEERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGP 155

Query: 92  LVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE 143
           LVEETST+CGHIFCKACIRAAI VQSKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 156 LVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of Cla002709 vs. NCBI nr
Match: gi|659120837|ref|XP_008460373.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 3.8e-51
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 1 

Query: 31  VAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMG 90
           V  ER +VSNNNRSKRRRDVSN   VNSDLLINLEASNSSMKVKPAPPKEPKF+CPICMG
Sbjct: 94  VDAERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMG 153

Query: 91  PLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE 143
           PLVEETST+CGHIFCKACIRAAI VQSKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 154 PLVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFLPGTSLE 205

[Close]
BLAST of Cla002709 vs. NCBI nr
Match: gi|922368721|ref|XP_013456525.1| (zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula])

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-36
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1 

Query: 28  LLIVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNS----SMKVKPAPPKEPKF 87
           ++  AEE+I++SNNNR+KRRR+       N DL INL+AS+S    S+K  P PPKEP F
Sbjct: 131 VMFFAEEQIRLSNNNRNKRRRESPKRSIFNCDLYINLDASSSNTMESVKKPPEPPKEPVF 190

Query: 88  NCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
            CPICMGP+VEE STRCGHIFCK+CI+AAI+ Q+KCPTCRK++T KELIRVFLP T+
Sbjct: 191 TCPICMGPMVEEMSTRCGHIFCKSCIKAAISAQAKCPTCRKKITVKELIRVFLPTTA 247

[Close]
BLAST of Cla002709 vs. NCBI nr
Match: gi|802716618|ref|XP_012085067.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X1 [Jatropha curcas])

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-36
Identity = 76/117 (64.96%), Postives = 89/117 (76.07%), Query Frame = 1 

Query: 30  IVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVK------PAPPKEPKF 89
           ++A    +++ NN +KRRR  SNH  +N +  +NLE+S SSM+        P PPKEP F
Sbjct: 110 VIAGRTTRLTYNNPNKRRRSPSNHAVINCEHYVNLESSGSSMRDNAQQLQPPPPPKEPTF 169

Query: 90  NCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
           NCPICMGP VEETST+CGHIFCKACIRAAI VQSKCPTCRK+VT KELIRVFLP TS
Sbjct: 170 NCPICMGPFVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKKVTVKELIRVFLPATS 226

The following BLAST results are available for this feature:
BLAST of Cla002709 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RN151_MOUSE7.9e-0945.76RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1[more]
RNF4_MOUSE5.1e-0827.03E3 ubiquitin-protein ligase RNF4 OS=Mus musculus GN=Rnf4 PE=1 SV=1[more]
RNF4_RAT6.7e-0828.48E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus GN=Rnf4 PE=1 SV=1[more]
RNF4_HUMAN3.7e-0628.07E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens GN=RNF4 PE=1 SV=1[more]
RO52_HUMAN8.2e-0647.92E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1 SV=1[more]
BLAST of Cla002709 vs. TrEMBL
Match NameE-valueIdentityDescription
B7FGG8_MEDTR1.8e-3664.10Uncharacterized protein OS=Medicago truncatula GN=MTR_4g074240 PE=2 SV=1[more]
A0A067K272_JATCU1.8e-3664.96Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17518 PE=4 SV=1[more]
B7FMT2_MEDTR9.0e-3666.07Uncharacterized protein OS=Medicago truncatula GN=MTR_4g074240 PE=2 SV=1[more]
A0A151TMW3_CAJCA1.4e-3365.1452 kDa Ro protein OS=Cajanus cajan GN=KK1_021992 PE=4 SV=1[more]
B9T3C7_RICCO4.2e-3368.93RING finger protein, putative OS=Ricinus communis GN=RCOM_1750200 PE=4 SV=1[more]
BLAST of Cla002709 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453284|ref|XP_004144388.1|2.0e-5293.69PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus][more]
gi|659120828|ref|XP_008460369.1|4.4e-5292.79PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo][more]
gi|659120837|ref|XP_008460373.1|3.8e-5191.07PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo][more]
gi|922368721|ref|XP_013456525.1|2.6e-3664.10zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula][more]
gi|802716618|ref|XP_012085067.1|2.6e-3664.96PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X1 [Jatropha curcas][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
molecular_function GO:0061630 ubiquitin protein ligase activity
Unigene
This gene is associated with the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
WMU30834watermelon unigene v2 vs TrEMBLtranscribed_cluster
WMU56400watermelon EST collection version 2.0transcribed_cluster
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
Cla002709Cla002709.1mRNA


The following transcribed_cluster feature(s) are associated with this gene:

Feature NameUnique NameType
WMU56400WMU56400transcribed_cluster
WMU30834WMU30834transcribed_cluster


InterPro
Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 84..123
score: 8.0
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 85..122
score: 6.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 85..123
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 67..133
score: 1.9
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 100..109
scor
NoneNo IPR availablePANTHERPTHR23041RING FINGER DOMAIN-CONTAININGcoord: 30..137
score: 2.6
NoneNo IPR availablePANTHERPTHR23041:SF63C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 30..137
score: 2.6
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 84..129
score: 3.76

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
Cla002709Cla97C07G130330Watermelon (97103) v2wmwmbB176
Cla002709Cla97C05G083820Watermelon (97103) v2wmwmbB162
Cla002709Csa3G130260Cucumber (Chinese Long) v2cuwmB223
Cla002709MELO3C006300Melon (DHL92) v3.5.1mewmB460
Cla002709ClCG05G003190Watermelon (Charleston Gray)wcgwmB282
Cla002709ClCG07G002050Watermelon (Charleston Gray)wcgwmB374
Cla002709CSPI03G27630Wild cucumber (PI 183967)cpiwmB225
Cla002709CSPI03G10700Wild cucumber (PI 183967)cpiwmB221
Cla002709Cucsa.256580Cucumber (Gy14) v1cgywmB476
Cla002709Cucsa.150150Cucumber (Gy14) v1cgywmB266
Cla002709CmaCh19G001690Cucurbita maxima (Rimu)cmawmB492
Cla002709CmaCh02G016740Cucurbita maxima (Rimu)cmawmB559
Cla002709CmoCh19G001860Cucurbita moschata (Rifu)cmowmB486
Cla002709CmoCh02G017180Cucurbita moschata (Rifu)cmowmB552
Cla002709CmoCh06G012420Cucurbita moschata (Rifu)cmowmB791
Cla002709Lsi05G018550Bottle gourd (USVL1VR-Ls)lsiwmB360
Cla002709Cp4.1LG15g01440Cucurbita pepo (Zucchini)cpewmB258
Cla002709Cp4.1LG05g00670Cucurbita pepo (Zucchini)cpewmB701
Cla002709Cp4.1LG08g02700Cucurbita pepo (Zucchini)cpewmB843
Cla002709CsGy3G010780Cucumber (Gy14) v2cgybwmB209
Cla002709CsGy3G025660Cucumber (Gy14) v2cgybwmB212
Cla002709MELO3C006300.2Melon (DHL92) v3.6.1medwmB445
Cla002709MELO3C022715.2Melon (DHL92) v3.6.1medwmB362
Cla002709Carg26386Silver-seed gourdcarwmB0285
Cla002709Carg08896Silver-seed gourdcarwmB0779
Cla002709CsaV3_3G030010Cucumber (Chinese Long) v3cucwmB234
Cla002709Bhi05G000048Wax gourdwgowmB266
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
Cla002709Cla021407Watermelon (97103) v1wmwmB100
The following block(s) are covering this gene:
GeneOrganismBlock
Cla002709Cucumber (Gy14) v1cgywmB084
Cla002709Melon (DHL92) v3.5.1mewmB364
Cla002709Watermelon (Charleston Gray)wcgwmB026
Cla002709Cucumber (Chinese Long) v2cuwmB227
Cla002709Cucumber (Chinese Long) v2cuwmB587
Cla002709Bottle gourd (USVL1VR-Ls)lsiwmB194
Cla002709Bottle gourd (USVL1VR-Ls)lsiwmB357
Cla002709Cucumber (Gy14) v2cgybwmB549