WMU56400 (transcribed_cluster) Watermelon (97103) v1

NameWMU56400
Typetranscribed_cluster
OrganismCitrullus. lanatus (Watermelon (97103) v1)
DescriptionRING/U-box superfamily protein, putative
LocationChr7 : 253355 .. 254791 (-)
Sequence length263
The following sequences are available for this feature:

transcribed_cluster sequence

TGGGTCCGTTGGTAGAGGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCGATTAGGGGCTGCAATAGCCGTCCAGAGTAAATGCCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGCACAAGCTTGGAATGAGGCTTGGCTTACATCTTACAGGATTTTGTTTTTGAAGACTTCGAAAGGAAATGGCTGAAGTTTTCTTGTAAGTAAGAAAAGCTAATTTTTAGGTGG
BLAST of WMU56400 vs. TAIR10
Match: AT5G48655.2 (AT5G48655.2 RING/U-box superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 9.4e-11
Identity = 31/50 (62.00%), Postives = 33/50 (66.00%), Query Frame = 3

Query: 6   PLVEETSTRCGHIFCKACD*GLQ*PSRVNAPTCRKRVTAKELIRVFLPGT 65
           P  EE ST+CGHIFCK C   +    +   PTCRK+VTAKELIRVFLP T
Sbjct: 154 PFTEEMSTKCGHIFCKGCI-KMAISRQGKCPTCRKKVTAKELIRVFLPTT 202

Query: 66  125
           
Sbjct: 214 202

Query: 126 156
           
Sbjct: 274 202

BLAST of WMU56400 vs. TAIR10
Match: AT3G07200.1 (AT3G07200.1 RING/U-box superfamily protein)

HSP 1 Score: 58.9 bits (141), Expect = 1.8e-09
Identity = 27/50 (54.00%), Postives = 31/50 (62.00%), Query Frame = 3

Query: 6   PLVEETSTRCGHIFCKACD*GLQ*PSRVNAPTCRKRVTAKELIRVFLPGT 65
           P  +E ST+CGHIFCK C        +   PTCRK++T K+LIRVFLP T
Sbjct: 133 PFTQEVSTKCGHIFCKKCIKNAL-SLQAKCPTCRKKITVKDLIRVFLPTT 181

Query: 66  125
           
Sbjct: 193 181

Query: 126 156
           
Sbjct: 253 181

BLAST of WMU56400 vs. NCBI nr
Match: gi|449453284|ref|XP_004144388.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus])

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-14
Identity = 44/57 (77.19%), Postives = 45/57 (78.95%), Query Frame = 3

Query: 3   GPLVEETSTRCGHIFCKAC---D*GLQ*PSRVNAPTCRKRVTAKELIRVFLPGTSLE 62
           GPLVEETSTRCGHIFCKAC     G+Q       PTCRKRVTAKELIRVFLPGTSLE
Sbjct: 154 GPLVEETSTRCGHIFCKACIRAAIGVQ----SKCPTCRKRVTAKELIRVFLPGTSLE 206

Query: 63  122
           
Sbjct: 214 206

Query: 123 165
           
Sbjct: 274 206

BLAST of WMU56400 vs. NCBI nr
Match: gi|659120828|ref|XP_008460369.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 3

Query: 3   GPLVEETSTRCGHIFCKAC---D*GLQ*PSRVNAPTCRKRVTAKELIRVFLPGTSLE 62
           GPLVEETST+CGHIFCKAC     G+Q       PTCRKRVTAKELIRVFLPGTSLE
Sbjct: 154 GPLVEETSTKCGHIFCKACIRAAIGVQ----SKCPTCRKRVTAKELIRVFLPGTSLE 206

Query: 63  122
           
Sbjct: 214 206

Query: 123 165
           
Sbjct: 274 206

BLAST of WMU56400 vs. NCBI nr
Match: gi|659120837|ref|XP_008460373.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo])

HSP 1 Score: 86.7 bits (213), Expect = 2.2e-14
Identity = 43/57 (75.44%), Postives = 45/57 (78.95%), Query Frame = 3

Query: 3   GPLVEETSTRCGHIFCKAC---D*GLQ*PSRVNAPTCRKRVTAKELIRVFLPGTSLE 62
           GPLVEETST+CGHIFCKAC     G+Q       PTCRKRVTAKELIRVFLPGTSLE
Sbjct: 153 GPLVEETSTKCGHIFCKACIRAAIGVQ----SKCPTCRKRVTAKELIRVFLPGTSLE 205

Query: 63  122
           
Sbjct: 213 205

Query: 123 165
           
Sbjct: 273 205

BLAST of WMU56400 vs. NCBI nr
Match: gi|1012033623|ref|XP_015952624.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like [Arachis duranensis])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 3

Query: 3   GPLVEETSTRCGHIFCKACD*GLQ*PSRVNAPTCRKRVTAKELIRVFLPGTS 62
           GPLVEE STRCGHIFCK+C       ++   PTCRKRVT KELIRVFLP TS
Sbjct: 171 GPLVEEMSTRCGHIFCKSCI-KAAISAQSKCPTCRKRVTVKELIRVFLPSTS 221

Query: 63  122
           
Sbjct: 231 221

Query: 123 159
           
Sbjct: 291 221

BLAST of WMU56400 vs. NCBI nr
Match: gi|1021487690|ref|XP_016186802.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like [Arachis ipaensis])

HSP 1 Score: 77.4 bits (189), Expect = 1.4e-11
Identity = 36/52 (69.23%), Postives = 39/52 (75.00%), Query Frame = 3

Query: 3   GPLVEETSTRCGHIFCKACD*GLQ*PSRVNAPTCRKRVTAKELIRVFLPGTS 62
           GPLVEE STRCGHIFCK+C       ++   PTCRKRVT KELIRVFLP TS
Sbjct: 171 GPLVEEMSTRCGHIFCKSCI-KAAISAQSKCPTCRKRVTVKELIRVFLPSTS 221

Query: 63  122
           
Sbjct: 231 221

Query: 123 159
           
Sbjct: 291 221

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
AT5G48655.29.4e-1162.00 RING/U-box superfamily protein[more]
AT3G07200.11.8e-0954.00 RING/U-box superfamily protein[more]
Match NameE-valueIdentityDescription
gi|449453284|ref|XP_004144388.1|1.0e-1477.19PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus][more]
gi|659120828|ref|XP_008460369.1|2.2e-1475.44PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo][more]
gi|659120837|ref|XP_008460373.1|2.2e-1475.44PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo][more]
gi|1012033623|ref|XP_015952624.1|1.4e-1169.23PREDICTED: E3 ubiquitin-protein ligase RNF4-like [Arachis duranensis][more]
gi|1021487690|ref|XP_016186802.1|1.4e-1169.23PREDICTED: E3 ubiquitin-protein ligase RNF4-like [Arachis ipaensis][more]

This transcribed_cluster is associated with the following gene feature(s):

Feature NameUnique NameType
Cla002709Cla002709gene


The following EST feature(s) are a part of this transcribed_cluster:

Feature NameUnique NameType
S1_0131371S1_0131371EST