Carg26386 (gene) Silver-seed gourd | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Carg26386
Type	gene
Organism	Cucurbita argyrosperma (Silver-seed gourd)
Description	E3 ubiquitin-protein ligase RNF4
Location	Cucurbita_argyrosperma_scaffold_377 : 70835 .. 75754 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

AGCCCTTTCTCCATTTCTCCCTTTATAATGGCGATTTTCCCCTCTCTTCGCCTTCCACCTCTCAACCCTTCCAACCCTAATTACAAATATCACAAATTCGCGAGCTAATCCTCCACTCCATACACTTCTCATCTAATCTATTCTATCTATCGTAAAATTTCAAGATATTTGCTGCCTGTGTATCGCTTCATCAACCGGTTATTTCAGGTACTCCATCTCCAGATTAGAAGAATTTTCTTAATTGTGTATTGTATCTTGTTAATCTTAGTTATGATCTTTGGTTTTTTTTTTTTTTAAATAAATTGTTTTTGTGAATGCTTTGGCCGATGTTCGTTTGAAGAATGGATGTTTTGGTGATGTTCGTTGGAAGAATTTTTGGGTTGTGTAGTCGGGGCAAAAGATCGGATAGAATATGGGTTGTTTGGATAGGGATTTTGATGATCTGTGTGAATTTTGTGGTTTATTGTTAGTTGATTAATTCGAGGTTGGATGTAATTGAATCTGTGGTGTAACTAATTTGGAGATTTTCTGACACATTAATAAATGTTTAGGGGGAGAGGGTATTGGTCGATTATAAGAGGTGGGTTTTGTGTATAATGTGGGGTTTTCTCTTAAATCTAAAGAAGTGTTTGTTGATTAATGAAGTTTTGTTTTGTTTTTATGAGTTACAAGGATTTTGTTTCTTATATAAGTTTTTTATTATCGTGCCATTTCAGTGAATGATAACTGAAGTTTCGTTTTCGTATCCAAGCTTCTCAGCTTGTATTTGAATGGTGGTGGTGGTTGTTGTGTTGGCTTTGTTGGAAGCTATCAATTTCCTTCTGAAATTTTACAGTGCATGTATGGCAGGTTGTTGAGGAGCTTTGAACTATAGATGAGTACTCAGGCAATGAGAGGACATACTGCAAGAGGTTATCATCGTAGGAAATCTTTGGACTTGGACCTAAACAGCATGCCACCAACTGAGAACCGAGATCAGGGGGAGACATCTCAATTTGGATTTCCGGAAGCACAAGTTAATCAACAACAGTCTGTACAGCCTGCAATGATCGACATTGAAGCCATTGATGACGATGTTATTGAATCATCCGCTAGAGCTTTTGCTGAAGTATGATTCTTCTATCCATATTATGTTCCTGTTCTATTGATTCTGATCTGTTTTTCATGGAATCCGTCGATTATCTGTCAGGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAACATAGTTGATGTCGATGCAGGTATGTTTATTTCAGCTTGTGGAGGACTATAGCTAGGTTGATTTTTTTTCGTATTACTTTTCGTCCTTTGGATCTTTATTGAGATTTCTTCTTAATCTTAGCATCCATTAGTTAGACCCATTCTCTCACTGATTTTTGGACTACCTTGTTCTCCTGTCTAGAGCATGCTAGCAAGAGCAATGAATTGAAGAGATATTTTTGTTCGATCTATACATCTTCCCAATGTCCATCTAAGGGTCGGAGCTAATGATCATGATAGTTTTTTGCTTGGAGATTCGTAACCACGGTCTACAATTGCTTGTTTAGAATTTGCTATTAGCAAACCACCATAATTCTTCCATTGCATGCTATTTTGCAATGACATGACTTTATGCCACACGGCACCACTTTCAGTGGGTACCTTCCTAGCGGTTTAGTTAAAAAGTTGTCGTCTTTAGCTAGCTTCTCTATCGAATCATTCAACTTCATCGTCATGACATGAGCTAACCATCCATAAAAAAATAGATTCTTCCACCAACCATTCACTGAAAAGAAAGAAGACCCTAGTTGAACTTATTTTGGAGGTAATATGTTACTAGTATTCTCTCCAATCTTGAGGACATATCCCTTCCATAGCTCGCAGGAATATGTAGCCATCATAGCTCATGAATGGGGTTAAACCTTTTCATTGCTGCTTAAGACGGAGGCCTCGAATTCTTTGGATCAGACCACATAACTGGCTGGTTAGCTATTAGGACTTGTTTGGAATGCAAGGGGCGTCAGCAATGGCTGCTTCCAAGTTTCCAACTGATATGGACCTTGTGGGCAAGTAACTCTAGATGTTTATTGTTGTTTGGACTGTATTCCACTAGAACCTCTTGTCCATTTGTTGTGAAGCTTGCATCTCTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGAGCAGGGCGTCAAATAATAACCGGAGCAAGCGTAGGAGGGATGTGCCCAATCAACAAACTGTAAATTCTGATTTATTAATCAATTTGGAAGGCAGCAACAGCTCTATGGTACTGGGACAATTTATATCTTCATTACTCTTATTTTTGCGCAAATTTTTCTCGTCGTGTTACTCGTTAGGTATAGTGTATATTATATGATTGTCTTTATGATACCACCGTATAAGCACACGTCGAATTGAGGAATTTTCATGGCATGAGATAAGGACTTAGGAAGACAGAAAATGGTGCACTTCGTATTTGGCAAAACTCAGTGCATAGGCCATAGCAAATACTTTTAGACATTCCCAGTGCATCTAACTAGTTGGATTATATCTAGATCTTGAGATATTGAGATAACATATTTGTTCCAATACAATATTCAATTTAATGAGAATTTGAATATTGAATAACAAATATGCAGACTGTAACGACTCAGGCCCACTGCTAGCAGATATTGTCCTCTTTGAGCTTTCTCTTTCAAGCTTCCCCTCAAGATTTTAAAACGCGTCTGCTAGGAGAAGGTTTCCACACCCTTATAAGTGGTGGTTTGTTCTCCTTCCCAACTAATGTGGGACACCACAATCCACCCCCCTTCGAGGCCCAGCATCCTCACTGGCACTCCTTCCTTCCTCCAATCGATGTGGGACCACCCCTAAATCCACCTCCCTTTGGGCTCAGCGTCCTTACTGGCACACCGCCTCGTGTCTGCCCCCCCTTCGGGGAACAACGAGAAGGCTGGCACATCGTCTGGTGTTTGGCTTTGATACCATTTGTAACGACCCAGACCCACCGCTTGTAGATATTTTCCTCTTTGGGCCCTTTCGGGCTTCCCCTCAAAGCTTTAAAACGCATCTGCTAGGGGAGGGTTTCCACACCCTTATAAATGGTGGTTTGTTCTCCTCCCCAACCAATATGGGACATCACATTGATCCATGAGTTTCTACCGAGCTCTCTCTCTCTCATGTTCCTTGTGTTTGGTAACTTTTCTCCCCTTGGGAAAGGTTAAGTTAGTTTGTTTATGGTTCCTCTTGAATAATCTCTCTCTCTCGCACTTTGTTTGGATGATGCTCTGTCCTTCGGTTGATTTCTCTTAAAAATTAGGGTCTGTTCATAGTTCGAACCGATATTTGCTTATTGCTTAACCGAGAACCAAACCATACATTTTGGTTTGATTTCATTTGATTACATTTGAAAAAAGTGAATTATAGATGGGTTTGAGCAAAATAATTGGAAGTTAAACCAAAGAGTCTCTTCATTAGATCTAATTGTCACTAGGTTTAACGTCGTCCTTGTGACTATACTCGTGGTGGTCTTTATATGTAGTCGGCTCCAATAATGCAATTCCAGGAAGAGTCGGTAGTAGCTTCTTATTAGCTGTTAGTATTGAAAAACGAGTTGAGTGTTGAAAATGGGATGATGATGCGATTTCTATGGTTTTTGCAGAAAGAGAAGGCTGCTCCACCGAAGGAGCCCAATTTCAGTTGTCCAATATGCATGGGTCCGTTGGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATCAAGACTGCAATAGCCGTCCAGAGTAAATGCCCAACCTGTAGGAAAAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGAGGCTTATATGTAAGTTCCTTAATTGCTTGGTCATTCTCTTGTTCTCATGGTTCAAAAAAGTTGCATGTGCCTCGTTTTTAATATGTTTTCTTTGTTATTGGGCGAGCCCTGATGTGCCCACATCGGTTGGGGAGGAGAACAAAATATTCTTTATAACAGCGTGGATACCTCTCTCTAGCAGACACGTTTTAAAAACTTTGAGGGAAAGCTCAAAGAGGACAATATCTACTGGCCTGGGTTTTACAAATGGTATCAAAGCCAGACACCGGGTGATGTGCCAGCGAGGAGGCTAAGGCCCGAAGGGGGGTGAACATGAGGCGATGTGCTATCAAGGGTGCTGGACCCTAAGGGGAGGGGGGTGGATTGTGAGATCCCACATCGACTGGGGAGGAGAACGAAACATTCTTTATAAAGGTGTGGAAACCTCTCTCTAGTAGACACGTTTTAAAAACCTTGAAGGAAAGTCCGAAAGGGAAAGCCCAAAGAGGACAATATATACTAGCACTGGACTTGGGCTTTACAAATGGTATCAACGCCAGACACCGAGCGATGTGCCAGCAAGGAGGCTAAGCCCTGAAGGGGGGGTGAACATGATGCGGTGTGCTAGCAAGGGCGCTAGACCCCGAAGGGGGGGGGGGTGGATTGTGAGATCCCATATCGGTTGGGGAGGAGAGCGAAACATTATTTATAAGGGTGTGGAAACCTCTCCCTAGCAACGCATTTTAAAAACCTTGAGAGGAAGCTCAAAAGGAAAAGCCCAAATAGAACAATATTTGCTAGTGATGGGCTTGAAACGGTTACACCTGAGATTTCTTTCATAACTAACTTGGTCTCGTTTTTTATAAAATGGACAGTTGGGTGGATTTTGATTTTGAAGACTTCATTCAAAGGGAAATGGTTGGAGTTTTCTTGTATGTAAGAAAAGCTAATTTTTAGGTGGAAATTTGTGGTGCATTCTTCAGCTGATTGATGCGATGGATCTCAGAAAGCGTTAGGAGGAGGAGGAGGAGGAGGAAGTAGCAAGACCATTTAGATTTCCACATTTTTTTCTTTTTC

mRNA sequence

AGCCCTTTCTCCATTTCTCCCTTTATAATGGCGATTTTCCCCTCTCTTCGCCTTCCACCTCTCAACCCTTCCAACCCTAATTACAAATATCACAAATTCGCGAGCTAATCCTCCACTCCATACACTTCTCATCTAATCTATTCTATCTATCGTAAAATTTCAAGATATTTGCTGCCTGTGTATCGCTTCATCAACCGGTTATTTCAGGTTGTTGAGGAGCTTTGAACTATAGATGAGTACTCAGGCAATGAGAGGACATACTGCAAGAGGTTATCATCGTAGGAAATCTTTGGACTTGGACCTAAACAGCATGCCACCAACTGAGAACCGAGATCAGGGGGAGACATCTCAATTTGGATTTCCGGAAGCACAAGTTAATCAACAACAGTCTGTACAGCCTGCAATGATCGACATTGAAGCCATTGATGACGATGTTATTGAATCATCCGCTAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAACATAGTTGATGTCGATGCAGACGGAGGCCTCGAATTCTTTGGATCAGACCACATAACTGGCTGGTTAGCTATTAGGACTTGTTTGGAATGCAAGGGGCGTCAGCAATGGCTGCTTCCAAGTTTCCAACTGATATGGACCTTGTGGGCAAAAGAGCGGAGCAGGGCGTCAAATAATAACCGGAGCAAGCGTAGGAGGGATGTGCCCAATCAACAAACTGTAAATTCTGATTTATTAATCAATTTGGAAGGCAGCAACAGCTCTATGAAAGAGAAGGCTGCTCCACCGAAGGAGCCCAATTTCAGTTGTCCAATATGCATGGGTCCGTTGGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATCAAGACTGCAATAGCCGTCCAGAGTAAATGCCCAACCTGTAGGAAAAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGAGGCTTATATTTGGGTGGATTTTGATTTTGAAGACTTCATTCAAAGGGAAATGGTTGGAGTTTTCTTGTATGTAAGAAAAGCTAATTTTTAGGTGGAAATTTGTGGTGCATTCTTCAGCTGATTGATGCGATGGATCTCAGAAAGCGTTAGGAGGAGGAGGAGGAGGAGGAAGTAGCAAGACCATTTAGATTTCCACATTTTTTTCTTTTTC

Coding sequence (CDS)

ATGAGTACTCAGGCAATGAGAGGACATACTGCAAGAGGTTATCATCGTAGGAAATCTTTGGACTTGGACCTAAACAGCATGCCACCAACTGAGAACCGAGATCAGGGGGAGACATCTCAATTTGGATTTCCGGAAGCACAAGTTAATCAACAACAGTCTGTACAGCCTGCAATGATCGACATTGAAGCCATTGATGACGATGTTATTGAATCATCCGCTAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAACATAGTTGATGTCGATGCAGACGGAGGCCTCGAATTCTTTGGATCAGACCACATAACTGGCTGGTTAGCTATTAGGACTTGTTTGGAATGCAAGGGGCGTCAGCAATGGCTGCTTCCAAGTTTCCAACTGATATGGACCTTGTGGGCAAAAGAGCGGAGCAGGGCGTCAAATAATAACCGGAGCAAGCGTAGGAGGGATGTGCCCAATCAACAAACTGTAAATTCTGATTTATTAATCAATTTGGAAGGCAGCAACAGCTCTATGAAAGAGAAGGCTGCTCCACCGAAGGAGCCCAATTTCAGTTGTCCAATATGCATGGGTCCGTTGGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATCAAGACTGCAATAGCCGTCCAGAGTAAATGCCCAACCTGTAGGAAAAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGA

Protein sequence

MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDADGGLEFFGSDHITGWLAIRTCLECKGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE

Homology

[Close]

BLAST of Carg26386 vs. NCBI nr
Match: XP_022963653.1 (E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata] >XP_022963654.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata] >XP_022963655.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata] >XP_022963656.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata] >XP_022963657.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata])

HSP 1 Score: 362.1 bits (928), Expect = 1.5e-96
Identity = 196/249 (78.71%), Postives = 197/249 (79.12%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID
Sbjct: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDADGGLEFFGSDHITGWLAIRTCLEC 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA+                       
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAE----------------------- 120

Query: 121 KGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKE 180
                               ERSR         RRDVPNQQTVNSDLLINLEGSNSSMKE
Sbjct: 121 --------------------ERSRXXXXXXXXXRRDVPNQQTVNSDLLINLEGSNSSMKE 180

Query: 181 KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR 240
           KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR
Sbjct: 181 KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR 206

Query: 241 VFLPGTSLE 250
           VFLPGTSLE
Sbjct: 241 VFLPGTSLE 206

[Close]

BLAST of Carg26386 vs. NCBI nr
Match: XP_023554040.1 (E3 ubiquitin-protein ligase RNF4-like [Cucurbita pepo subsp. pepo] >XP_023554041.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita pepo subsp. pepo] >XP_023554043.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita pepo subsp. pepo] >XP_023554044.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 193/249 (77.51%), Postives = 195/249 (78.31%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRD GETSQFGF EAQVNQQQSVQPAMID
Sbjct: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDPGETSQFGFQEAQVNQQQSVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDADGGLEFFGSDHITGWLAIRTCLEC 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA+                       
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAE----------------------- 120

Query: 121 KGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKE 180
                               ERSR         RRDVPNQQTVNSDLLINLEGSNSSMKE
Sbjct: 121 --------------------ERSRXXXXXXXXXRRDVPNQQTVNSDLLINLEGSNSSMKE 180

Query: 181 KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR 240
           KA+PPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR
Sbjct: 181 KASPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR 206

Query: 241 VFLPGTSLE 250
           VFLPGTSLE
Sbjct: 241 VFLPGTSLE 206

[Close]

BLAST of Carg26386 vs. NCBI nr
Match: XP_022967334.1 (E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967335.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967336.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967337.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967338.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967339.1 E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima])

HSP 1 Score: 352.8 bits (904), Expect = 9.4e-94
Identity = 192/249 (77.11%), Postives = 194/249 (77.91%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MST+AMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGF EAQVNQQQSVQPAMID
Sbjct: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDADGGLEFFGSDHITGWLAIRTCLEC 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDA+                       
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAE----------------------- 120

Query: 121 KGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKE 180
                               ERSR          RDVPNQQTVNSDLLINLE SNSSMKE
Sbjct: 121 --------------------ERSRXXXXXXXXXXRDVPNQQTVNSDLLINLEASNSSMKE 180

Query: 181 KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR 240
           KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR
Sbjct: 181 KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR 206

Query: 241 VFLPGTSLE 250
           VFLPGTSLE
Sbjct: 241 VFLPGTSLE 206

[Close]

BLAST of Carg26386 vs. NCBI nr
Match: XP_004144388.1 (PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus] >XP_011651653.1 PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus] >XP_011651654.1 PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus])

HSP 1 Score: 343.2 bits (879), Expect = 7.4e-91
Identity = 185/249 (74.30%), Postives = 191/249 (76.71%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MSTQAMRGHT RGYHRRKSLDLDLNSMPPTENRDQGETSQ    +AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHTTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDADGGLEFFGSDHITGWLAIRTCLEC 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA+                       
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAE----------------------- 120

Query: 121 KGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKE 180
                               ERSR SNNNRSKRRRDV N+ +VNSDLLINLE SNSSMK 
Sbjct: 121 --------------------ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKV 180

Query: 181 KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR 240
           K APPKEP FSCPICMGPLVEETSTRCGHIFCKACI+ AI VQSKCPTCRKRVTAKELIR
Sbjct: 181 KPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIR 206

Query: 241 VFLPGTSLE 250
           VFLPGTSLE
Sbjct: 241 VFLPGTSLE 206

[Close]

BLAST of Carg26386 vs. NCBI nr
Match: XP_008460369.1 (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_008460370.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_008460371.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_008460372.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_016902544.1 PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo])

HSP 1 Score: 340.1 bits (871), Expect = 6.3e-90
Identity = 183/249 (73.49%), Postives = 190/249 (76.31%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MSTQAMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQ    +AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDADGGLEFFGSDHITGWLAIRTCLEC 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA+                       
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAE----------------------- 120

Query: 121 KGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKE 180
                               ERSR SNNNRSKRRRDV N+ +VNSDLLINLE SNSSMK 
Sbjct: 121 --------------------ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKV 180

Query: 181 KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR 240
           K APPKEP FSCPICMGPLVEETST+CGHIFCKACI+ AI VQSKCPTCRKRVTAKELIR
Sbjct: 181 KPAPPKEPKFSCPICMGPLVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIR 206

Query: 241 VFLPGTSLE 250
           VFLPGTSLE
Sbjct: 241 VFLPGTSLE 206

[Close]

BLAST of Carg26386 vs. TAIR10
Match: AT5G48655.2 (RING/U-box superfamily protein)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-35
Identity = 103/254 (40.55%), Postives = 137/254 (53.94%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           M+T  +R    RG  RRK++ +DLN++P  +   +G ++        +   Q   P MID
Sbjct: 1   MNTSEVR--VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDADGGLEFFGSDHITGWLAIRTCL 120
           ++AI+DDVIESSA AFAEAK  S RNAR+   +VDV++ G   F                
Sbjct: 61  VDAIEDDVIESSASAFAEAKXXS-RNARRRPLMVDVESGGTTRF---------------- 120

Query: 121 ECKGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTV------NSDLLINLE 180
                     P+                  N S +RR +P+ ++V      + +  +N+ 
Sbjct: 121 ----------PA------------------NISNKRRRIPSSESVIDCEHASVNDEVNMS 180

Query: 181 GSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKR 240
              S  K  A PP+EP F+CPICM P  EE ST+CGHIFCK CIK AI+ Q KCPTCRK+
Sbjct: 181 SRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGCIKMAISRQGKCPTCRKK 202

Query: 241 VTAKELIRVFLPGT 247
           VTAKELIRVFLP T
Sbjct: 241 VTAKELIRVFLPTT 202

[Close]

BLAST of Carg26386 vs. TAIR10
Match: AT3G07200.1 (RING/U-box superfamily protein)

HSP 1 Score: 102.1 bits (253), Expect = 5.2e-22
Identity = 75/220 (34.09%), Postives = 96/220 (43.64%), Query Frame = 0


Query: 30  TENRDQGETSQFGFPEAQVNQQQSVQPAMIDIEAI--DDDVIESSARAFAEAKNKSRRNA 89
           T+N  QG+  Q    +A    Q    P  I++ AI  DDDV+ES+A AFA+AKNKSR   
Sbjct: 19  TQNEHQGD--QQVADQAPTVPQIVATPPRINVVAIEDDDDVVESTASAFAQAKNKSRSAR 78

Query: 90  R-KNIVDVDADGGLEFFGSDHITGWLAIRTCLECKGRQQWLLPSFQLIWTLWAKERSRAS 149
           R   +VDV+                                                   
Sbjct: 79  RGSQVVDVE--------------------------------------------------- 138

Query: 150 NNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKEKAAPPKEPNFSCPICMGPLVEETSTR 209
               S                              A P +EP FSCPIC+ P  +E ST+
Sbjct: 139 ----SAXXXXXXXXXXXXXXXXXXXXXXXXXXXAVAPPVEEPKFSCPICLCPFTQEVSTK 181

Query: 210 CGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFLPGT 247
           CGHIFCK CIK A+++Q+KCPTCRK++T K+LIRVFLP T
Sbjct: 199 CGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVFLPTT 181

[Close]

BLAST of Carg26386 vs. TAIR10
Match: AT5G05130.1 (DNA/RNA helicase protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.8e-06
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 0


Query: 189 NFSCPICMGPLVEETSTRCGHIFCKACI-KTAIAVQSKCPTCRKRVTAKEL 239
           +F CPIC+ P      TRC HIFC+ACI +T    +  CP CR  +T  +L
Sbjct: 613 DFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDL 663

[Close]

BLAST of Carg26386 vs. TAIR10
Match: AT4G03510.1 (RING membrane-anchor 1)

HSP 1 Score: 47.0 bits (110), Expect = 2.0e-05
Identity = 22/67 (32.84%), Postives = 34/67 (50.75%), Query Frame = 0


Query: 187 EPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQS-----------KCPTCRKRVTA 243
           + NF C IC+  + E   T CGH+FC  CI   + VQS           +CP C+ +V+ 
Sbjct: 43  DSNFDCNICLDSVQEPVVTLCGHLFCWPCIHKWLDVQSFSTSDEYQRHRQCPVCKSKVSH 102

[Close]

BLAST of Carg26386 vs. TAIR10
Match: AT3G27330.1 (zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 44.3 bits (103), Expect = 1.3e-04
Identity = 19/44 (43.18%), Postives = 27/44 (61.36%), Query Frame = 0


Query: 191 SCPICMGPLVEETSTRCGHIFCKACIKTAI-AVQSKCPTCRKRV 234
           SC IC+    E ++T CGH FCK C+++A      KCP CR+ +
Sbjct: 723 SCAICLEICFEPSTTTCGHSFCKKCLRSAADKCGRKCPKCRQLI 766

[Close]

BLAST of Carg26386 vs. Swiss-Prot
Match: sp|Q9CQ29|RN151_MOUSE (RING finger protein 151 OS=Mus musculus OX=10090 GN=Rnf151 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.6e-07
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 0


Query: 183 APPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRV 242
           A P +  F C +C G L   T   C HIFCK CI   +A Q+ CP CRK VT ++++ V
Sbjct: 11  ASPPDCKFLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEVTRRKMVEV 69

[Close]

BLAST of Carg26386 vs. Swiss-Prot
Match: sp|Q9QZS2|RNF4_MOUSE (E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 6.5e-06
Identity = 26/88 (29.55%), Postives = 43/88 (48.86%), Query Frame = 0


Query: 164 NSDLLINLEGSNSSMKEKAAPPK-EPNFSCPICMGPLVE-------ETSTRCGHIFCKAC 223
           + D+ +      S+  + A  P+     SCPICM    E         ST CGH+FC  C
Sbjct: 107 DKDVYVTTHTPRSTKDDGATGPRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC 166

Query: 224 IKTAIAVQSKCPTCRKRVTAKELIRVFL 244
           ++ ++   + CPTCRK++  K    +++
Sbjct: 167 LRDSLKNANTCPTCRKKINHKRYHPIYI 194

[Close]

BLAST of Carg26386 vs. Swiss-Prot
Match: sp|P78317|RNF4_HUMAN (E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens OX=9606 GN=RNF4 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.5e-05
Identity = 22/60 (36.67%), Postives = 33/60 (55.00%), Query Frame = 0


Query: 191 SCPICMGPLVE-------ETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFL 244
           SCPICM    E         ST CGH+FC  C++ ++   + CPTCRK++  K    +++
Sbjct: 131 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 190

[Close]

BLAST of Carg26386 vs. Swiss-Prot
Match: sp|O88846|RNF4_RAT (E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus OX=10116 GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.5e-05
Identity = 22/60 (36.67%), Postives = 33/60 (55.00%), Query Frame = 0


Query: 191 SCPICMGPLVE-------ETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFL 244
           SCPICM    E         ST CGH+FC  C++ ++   + CPTCRK++  K    +++
Sbjct: 135 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194

[Close]

BLAST of Carg26386 vs. Swiss-Prot
Match: sp|E7FDW2|PZR3B_DANRE (E3 ubiquitin-protein ligase PDZRN3-B OS=Danio rerio OX=7955 GN=pdzrn3b PE=1 SV=1)

HSP 1 Score: 51.2 bits (121), Expect = 1.9e-05
Identity = 21/55 (38.18%), Postives = 32/55 (58.18%), Query Frame = 0


Query: 187 EPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRV 242
           +P+F C +C   L +  +T CGH+FC  C+   +  QS CP   +R++ KEL  V
Sbjct: 13  DPDFKCNLCNKVLEDPLTTPCGHVFCAGCVLPWVVQQSSCPVKCQRISTKELNHV 67

[Close]

BLAST of Carg26386 vs. TrEMBL
Match: tr|A0A1S3CCB4|A0A1S3CCB4_CUCME (E3 ubiquitin-protein ligase RNF4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC103499213 PE=4 SV=1)

HSP 1 Score: 340.1 bits (871), Expect = 4.2e-90
Identity = 183/249 (73.49%), Postives = 190/249 (76.31%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MSTQAMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQ    +AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDADGGLEFFGSDHITGWLAIRTCLEC 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA+                       
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAE----------------------- 120

Query: 121 KGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKE 180
                               ERSR SNNNRSKRRRDV N+ +VNSDLLINLE SNSSMK 
Sbjct: 121 --------------------ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKV 180

Query: 181 KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR 240
           K APPKEP FSCPICMGPLVEETST+CGHIFCKACI+ AI VQSKCPTCRKRVTAKELIR
Sbjct: 181 KPAPPKEPKFSCPICMGPLVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIR 206

Query: 241 VFLPGTSLE 250
           VFLPGTSLE
Sbjct: 241 VFLPGTSLE 206

[Close]

BLAST of Carg26386 vs. TrEMBL
Match: tr|A0A1S3CBW2|A0A1S3CBW2_CUCME (E3 ubiquitin-protein ligase RNF4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC103499213 PE=4 SV=1)

HSP 1 Score: 339.0 bits (868), Expect = 9.3e-90
Identity = 183/249 (73.49%), Postives = 189/249 (75.90%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQQSVQPAMID 60
           MSTQAMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQ    +AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDADGGLEFFGSDHITGWLAIRTCLEC 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDA                        
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDA------------------------ 120

Query: 121 KGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMKE 180
                               ERSR SNNNRSKRRRDV N+ +VNSDLLINLE SNSSMK 
Sbjct: 121 --------------------ERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKV 180

Query: 181 KAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIR 240
           K APPKEP FSCPICMGPLVEETST+CGHIFCKACI+ AI VQSKCPTCRKRVTAKELIR
Sbjct: 181 KPAPPKEPKFSCPICMGPLVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIR 205

Query: 241 VFLPGTSLE 250
           VFLPGTSLE
Sbjct: 241 VFLPGTSLE 205

[Close]

BLAST of Carg26386 vs. TrEMBL
Match: tr|A0A2I4H612|A0A2I4H612_9ROSI (E3 ubiquitin-protein ligase RNF4 OS=Juglans regia OX=51240 GN=LOC109013825 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 8.4e-59
Identity = 135/253 (53.36%), Postives = 163/253 (64.43%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKS-LDLDLNSMPPTENRD-QGETSQFGFPEAQVNQQQSVQPAM 60
           MS++A RG   RGY RRK+ LDLDLN+ PP++NRD +G + Q    E    Q +SV PAM
Sbjct: 1   MSSRAARGAPVRGYRRRKTVLDLDLNTAPPSDNRDLEGTSIQV---EHNGIQGRSVLPAM 60

Query: 61  IDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDADGGLEFFGSDHITGWLAIRTCL 120
           ID+EAIDDDV+ESS RAFA+AKN SRRN  + +VDVD +                     
Sbjct: 61  IDVEAIDDDVVESSPRAFAQAKNNSRRNGGRAVVDVDQE--------------------- 120

Query: 121 ECKGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSM 180
                                 ER+R + NNR+KRRRD+PNQ  +N DL INLE S++S 
Sbjct: 121 ----------------------ERTRVAQNNRNKRRRDLPNQTIINCDLYINLESSSNST 180

Query: 181 KEKA----APPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVT 240
           +E      +PPKEP F+CPICMGPLVEE STRCGHIFCK CIKTA+  QSKCPTCRK +T
Sbjct: 181 RESVTKLPSPPKEPTFTCPICMGPLVEEMSTRCGHIFCKTCIKTAMRTQSKCPTCRKHIT 207

Query: 241 AKELIRVFLPGTS 248
           AKELIR+FLP TS
Sbjct: 241 AKELIRIFLPSTS 207

[Close]

BLAST of Carg26386 vs. TrEMBL
Match: tr|A0A2C9UUR1|A0A2C9UUR1_MANES (Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G046900 PE=4 SV=1)

HSP 1 Score: 208.0 bits (528), Expect = 2.5e-50
Identity = 130/263 (49.43%), Postives = 158/263 (60.08%), Query Frame = 0


Query: 1   MSTQA--MRGHTARGYHRRKSLDLDLNSMPPTENRDQGETS----QFGFPEAQVNQQQSV 60
           MSTQA  +RG T RGY RRK++ LDLN + P E+RDQ  TS    QFG P +Q  Q+Q V
Sbjct: 1   MSTQAQGVRGPTLRGYRRRKAM-LDLNLL-PNESRDQEGTSTQDVQFGVPTSQ--QEQPV 60

Query: 61  QPAMIDIEAIDDDVIESSARAFAEAKNKSRRN----ARKNIVDVDADGGLEFFGSDHITG 120
            P  ID+EA+DDDVIESS RAFAEAK+ ++RN       + V VD D G           
Sbjct: 61  PPTTIDVEALDDDVIESSPRAFAEAKSNAQRNNTQRTHGSTVVVDVDSG----------- 120

Query: 121 WLAIRTCLECKGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLIN 180
                                         + +R + NN +KRRR +PNQ  ++ +  +N
Sbjct: 121 ------------------------------QTTRLNYNNHNKRRRILPNQTIISCEHYVN 180

Query: 181 LEGSNSSMKEKA------APPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQS 240
           LE S+SSM+E         PPKEP F+CPICMGP VEETST+CGHIFCKACIK AI VQ 
Sbjct: 181 LESSSSSMRENVQPPPSPQPPKEPTFNCPICMGPFVEETSTKCGHIFCKACIKAAIRVQG 218

Query: 241 KCPTCRKRVTAKELIRVFLPGTS 248
           KCPTCRK+V  KELIRVFLP T+
Sbjct: 241 KCPTCRKKVAVKELIRVFLPATN 218

[Close]

BLAST of Carg26386 vs. TrEMBL
Match: tr|A0A1U8L757|A0A1U8L757_GOSHI (E3 ubiquitin-protein ligase RNF4-like isoform X2 OS=Gossypium hirsutum OX=3635 GN=LOC107924480 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.2e-50
Identity = 134/252 (53.17%), Postives = 157/252 (62.30%), Query Frame = 0


Query: 1   MSTQAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFPEAQVNQQ-QSVQPAMI 60
           MST  +RG + RGY RRK++ LDLN+ PP+E R+Q  TSQ    E Q NQ  QS  PA I
Sbjct: 23  MSTLEIRGPSLRGYRRRKAV-LDLNA-PPSEIREQEGTSQQAGYEDQTNQSVQSGPPATI 82

Query: 61  DIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDADGGLEFFGSDHITGWLAIRTCLE 120
           D+EAIDDDVIESSARAFAEA+N SRR+  + +VDVD         S HI+          
Sbjct: 83  DVEAIDDDVIESSARAFAEAQNNSRRSRGRTVVDVD---------SAHISA--------- 142

Query: 121 CKGRQQWLLPSFQLIWTLWAKERSRASNNNRSKRRRDVPNQQTVNSDLLINLEGSNSSMK 180
                   LP        W+   +R+SNNN++  RR  P      S  +INLE S  S+ 
Sbjct: 143 --------LPG-------WS---ARSSNNNQNMHRRLPP------SSSIINLEISPQSIV 202

Query: 181 EKAA----PPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTA 240
           E+      PPKEP F+CPICMGPL EE STRCGHIFCKACIK AI  Q+KCPTCRKRVT 
Sbjct: 203 EEITKPQPPPKEPTFNCPICMGPLTEEMSTRCGHIFCKACIKAAITTQAKCPTCRKRVTV 230

Query: 241 KELIRVFLPGTS 248
           KELIRVFLP  S
Sbjct: 263 KELIRVFLPSAS 230

The following BLAST results are available for this feature:

BLAST of Carg26386 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022963653.1	1.5e-96	78.71	E3 ubiquitin-protein ligase RNF4-like [Cucurbita moschata] >XP_022963654.1 E3 ub...	[more]
XP_023554040.1	1.4e-94	77.51	E3 ubiquitin-protein ligase RNF4-like [Cucurbita pepo subsp. pepo] >XP_023554041...	[more]
XP_022967334.1	9.4e-94	77.11	E3 ubiquitin-protein ligase RNF4-like [Cucurbita maxima] >XP_022967335.1 E3 ubiq...	[more]
XP_004144388.1	7.4e-91	74.30	PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus] >XP_011651653.1 PR...	[more]
XP_008460369.1	6.3e-90	73.49	PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo] >XP_0...	[more]

BLAST of Carg26386 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G48655.2	1.1e-35	40.55	RING/U-box superfamily protein	[more]
AT3G07200.1	5.2e-22	34.09	RING/U-box superfamily protein	[more]
AT5G05130.1	1.8e-06	45.10	DNA/RNA helicase protein	[more]
AT4G03510.1	2.0e-05	32.84	RING membrane-anchor 1	[more]
AT3G27330.1	1.3e-04	43.18	zinc finger (C3HC4-type RING finger) family protein	[more]

BLAST of Carg26386 vs. Swiss-Prot


Match Name	E-value	Identity	Description
sp\|Q9CQ29\|RN151_MOUSE	1.6e-07	44.07	RING finger protein 151 OS=Mus musculus OX=10090 GN=Rnf151 PE=1 SV=1	[more]
sp\|Q9QZS2\|RNF4_MOUSE	6.5e-06	29.55	E3 ubiquitin-protein ligase RNF4 OS=Mus musculus OX=10090 GN=Rnf4 PE=1 SV=1	[more]
sp\|P78317\|RNF4_HUMAN	1.5e-05	36.67	E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens OX=9606 GN=RNF4 PE=1 SV=1	[more]
sp\|O88846\|RNF4_RAT	1.5e-05	36.67	E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus OX=10116 GN=Rnf4 PE=1 SV=1	[more]
sp\|E7FDW2\|PZR3B_DANRE	1.9e-05	38.18	E3 ubiquitin-protein ligase PDZRN3-B OS=Danio rerio OX=7955 GN=pdzrn3b PE=1 SV=1	[more]

BLAST of Carg26386 vs. TrEMBL


Match Name	E-value	Identity	Description
tr\|A0A1S3CCB4\|A0A1S3CCB4_CUCME	4.2e-90	73.49	E3 ubiquitin-protein ligase RNF4-like isoform X1 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A1S3CBW2\|A0A1S3CBW2_CUCME	9.3e-90	73.49	E3 ubiquitin-protein ligase RNF4-like isoform X2 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
tr\|A0A2I4H612\|A0A2I4H612_9ROSI	8.4e-59	53.36	E3 ubiquitin-protein ligase RNF4 OS=Juglans regia OX=51240 GN=LOC109013825 PE=4 ...	[more]
tr\|A0A2C9UUR1\|A0A2C9UUR1_MANES	2.5e-50	49.43	Uncharacterized protein OS=Manihot esculenta OX=3983 GN=MANES_12G046900 PE=4 SV=...	[more]
tr\|A0A1U8L757\|A0A1U8L757_GOSHI	4.2e-50	53.17	E3 ubiquitin-protein ligase RNF4-like isoform X2 OS=Gossypium hirsutum OX=3635 G...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR017907	Znf_RING_CS
IPR013083	Znf_RING/FYVE/PHD
IPR001841	Znf_RING

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Carg26386-RA	Carg26386-RA	mRNA

InterPro

Analysis Name: InterPro Annotations of silver-seed gourd
Date Performed: 2019-03-07


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 192..229 e-value: 6.9E-5 score: 32.2
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 191..230 e-value: 2.3E-9 score: 37.3
IPR001841	Zinc finger, RING-type	PROSITE	PS50089	ZF_RING_2	coord: 192..230 score: 12.534
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 137..245 e-value: 2.7E-18 score: 67.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 25..39
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..39
None	No IPR available	PANTHER	PTHR23041	RING FINGER DOMAIN-CONTAINING	coord: 152..246
None	No IPR available	PANTHER	PTHR23041:SF62	SUBFAMILY NOT NAMED	coord: 152..246
None	No IPR available	SUPERFAMILY	SSF57850	RING/U-box	coord: 187..236
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 207..216

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Carg26386	Cla002709	Watermelon (97103) v1	carwmB0285
Carg26386	Csa3G630250	Cucumber (Chinese Long) v2	carcuB0319
Carg26386	MELO3C022715	Melon (DHL92) v3.5.1	carmeB0294
Carg26386	ClCG07G002050	Watermelon (Charleston Gray)	carwcgB0284
Carg26386	CSPI03G27620	Wild cucumber (PI 183967)	carcpiB0325
Carg26386	Cucsa.150150	Cucumber (Gy14) v1	carcgyB0342
Carg26386	CmaCh02G016740	Cucurbita maxima (Rimu)	carcmaB0404
Carg26386	CmaCh19G001690	Cucurbita maxima (Rimu)	carcmaB0403
Carg26386	CmoCh02G017180	Cucurbita moschata (Rifu)	carcmoB0400
Carg26386	CmoCh19G001860	Cucurbita moschata (Rifu)	carcmoB0399
Carg26386	Lsi05G011260	Bottle gourd (USVL1VR-Ls)	carlsiB266
Carg26386	Cp4.1LG15g01440	Cucurbita pepo (Zucchini)	carcpeB0405
Carg26386	Cp4.1LG05g00670	Cucurbita pepo (Zucchini)	carcpeB0406
Carg26386	CsGy3G025660	Cucumber (Gy14) v2	carcgybB0306
Carg26386	MELO3C022715.2	Melon (DHL92) v3.6.1	carmedB0305
Carg26386	CsaV3_3G030010	Cucumber (Chinese Long) v3	carcucB0325
Carg26386	Cla97C07G130330	Watermelon (97103) v2	carwmbB0299
Carg26386	Bhi05G000048	Wax gourd	carwgoB0380

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
Carg26386	Carg08896	Silver-seed gourd	carcarB323

The following block(s) are covering this gene:

None