CmaCh19G001690 (gene) Cucurbita maxima (Rimu)

Overview
NameCmaCh19G001690
Typegene
OrganismCucurbita maxima (Cucurbita maxima (Rimu))
DescriptionUbiquitin-protein ligase/zinc ion binding protein
LocationCma_Chr19 : 1130660 .. 1134132 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
AAGGAAGAACCAAGCAACACACGTGTGACGCAATTATTGTCAATGCAAGAACCCTGGAGCTTCCTCTCTGCCGTGTCTAGATTTTCATTTCCAATCCCCAGCCCTTTCTCCATTTCTCTCTTTGTAATGGCTATTTTCCCCTCTCTTCACCTTCCACCTCTCAGCCCTTCGAACCCTAATTACAAATATCACAAATCTGCGAGGTAATCATCCTCTTCAATACATTTTTTTTCTGATCTAATCTATTCTATATATCACCATAAAATTTCAAGATATTTGCTAGCAAGTGTGGTATCGCTTCATCAACCGATTATTTCAGGTACACAGTCTCGGAAGAATTTTGTAATTTTTTTTTAATTGTGTATTGTATATTGATTTAGTGATGATCTTTGTTTTTTTTTTTTTTAAATAAATTGTTTTTGTGAATGCTGTCTTGAAGAATTGAGGTTGAGGTTTTGGTTTGTGGAGTTGGGGCAAAAAAAATTCGATATTTGGATATGGATTTTGATGATCGGGTGAATTTTGTAGTTTATTGTTAGGAATTGTGTGGTTTATTGTTAGTGTTATGATTAATTATAGGGTTTAATGTAATTGAATCGTGGGGTAACTGATTTGGAGATTTTCTGTCATGAATGTTTAGGGGAGAAGGTATTGGTAGATTGAAGGTATTGGTAGATTGAAGGGGCGGGTTTTGTGTATAAAGTTTCCTTAGTGTTTTCGTATCCAAGCTTCTCAGCTTGTATTTGAATGGTGGTGATGGTTCTTGTGTTGGCTTGTGGGAAGCTATCAATTTCTTTCTGAAATTTTACAGTGCATGTTGGCAGGTTGTTGAGGAGCTTCTAACTATAGATGAGTACTCGGGCAATGAGAGGACATACTGCAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTAAACAGCATGCCACCAACTGAGAACCGAGATCAGGGGGAGACGTCTCAATTTGGATTTCAGGAGGCACAAGTTAATCAACAACAGTCTGTACAGCCTGCAATGATCGACATTGAGGCCATTGATGACGATGTTATTGAATCATCCGCTAGAGCTTTTGCTGAAGTATGCTTCCTCTGGCCTCTATATTGTTTTGTACTTATGATTCTTCTATCCATATTATGTTCCTGTTCTATTGATTCTGATCTGTTTTTCATGGAATCCATCGATTATCTGTCAGGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAACATAGTTGATGTCGATGCAGGTATGTTCATTTGAGCTTGTGGAGGACTATAGCTAGGTTGATTTTTTTCGTATTACTTTTCTTCCTTTGGATCTTTATTGAGATTTCTTCTTAAGCTTAGCATCCGTTAGTTAGACCTATTCTCTCACTGATTTTTGGACTACCTTGTACTCCTGTCTAGAGCATGCAGTGTCTAGAGCATGCAAGCAAGAGTAAGGAATTGAAGAGTTATTTTTGTTCGATCCATACATTTTCCCAAAATATGCCTTTATATCAAATTATCCCATCTAAGGGTCGAAGCTAATTATTATGATAGTTTTTAGCTTGGAGATTCGTAACCACGGTCTACAATCGCATGTTTAGAATTTTCCTTTAGCAAACCACCATAATTCTTCCATTGCATGCTATTTTGCAATGACATGACTTTATGCCACATGGCACCATTCACTGAAAAGAAAGAAGACCTTAGTTGAACTTATTTTGGAGGTAATATGTTACTAGTATTCTCTCTAATCTTGAGGACATATCCCTTGCATAGCTCGCAGGAATATGTAGCCATCATAGCTCATGAATGGGGTTAAACCTTTTCATTGCTGCTTAAAACAGAGGCCTCCCAATTCTTTGAGATCTGTCATTAGAAGCTTCATGAAATCGGTTCTTCCTTGATTACCAGCTCGGCTATAAGTTCCGATCATTCCGTGGGAAGGATCAGACCACATAACTGGCTGGTTAGCTATTAGGTTAGCTATTAGGACTTGTTTGGAATGCAAGGGGCGTCAGCAATGGCTGCTTCCAAGTTTCCAACTGATATGGACCTTGTGGGCAAGTAACTGTAGATGTTTATTATCTATGTTTATGGTCGTACCATCTTTGGACTGTATTCCACTAGAACCTCTTGTCCATTTGTTGTGAAGCTTGCATCTCTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGAGCAGGGCGTCAAATAATAACCGGAGCAAGCGTAGGAGGGATGTGCCAAATCAACAAACTGTAAATTCTGATTTATTGATCAATTTGGAAGCCAGCAACAGCTCTATGGTACTGGGACAATTTATATCTTCATTACTCTTATTTTTGCGCAATTTTTTCTCGTGGTGTTACTCCTTAGGTATAGTGTATATTATATAATTGTCTTTATGATACCCCCGTACAAGCACACATGTGGAATTGAGGAATTTTCATGGCATGAGATAAGGACTTAGGAAGACAGAAAATGGTGCACTTCGTATTTGGCAAAACTCAGTGCATAGGCATAACAAAGGTGTATTTGAACAAATATGTTCTCTGTAACAACCCAGGCTCAACGCTAGCAGATATTGTCCTCTTTGGGTTTTCCCTTTCGGGCTTCCTCTCAAGGCTTTAAAACGCGTCTGCTAGGGGAAGGTTTCTAGACCCTTATAAGTGGTGGTTTGTTCTCCTCCCCAACCAATGAGGGACATCACACCGACCAAGTTTCGTCTGATGCCATCGGAAGGGTGATTTTAGTTTGTGTTTGATCCATGAGTTTCTACAGAGCTCTCTCTCTCATGTTCCTTGTGTTTGGTAACTTTTCTCCCTCTGGGAAAAGTTAAGTTAGTTTGTTTATGGTTTCTTTTGAATAATCTCTCTCTCTCTCTCGCACTTTGTTTGGATGATGCTCTGTCCTTCGGTTGATTTCTCTTAAAAGTTAGGGTCTGTTCATAGTTCGAACCGATTTTGCTTATCGCTTAACCGAGAACCAAACCATACATTTTGGTTTGATTTCATTTGAAAAAAGTGAATTATAGATGAGTTTGAGCAAAATAATTGAAAGTTAAACCAAAGAGTCCCTTCATTAGATCTAATTGTCCCTAGGTTTAATGTCGTCCTTGTGACTGAACTCGTGGTGGTCTTTATATGTAGTCGGCTCCAATAATGCAATTCCAGGAGGAGTCGGTTTCTTATTTGCTGTTAGTATTGAAATACGAGTATAGGGTTGAAAATGGGATGATGATGCGATTTCTGTGGTTTTTGCAGAAAGAGAAGGCTGCTCCACCGAAGGAGCCCAATTTCAGTTGTCCAATATGCATGGGACCGTTGGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGTAAGGCATGCATCAAGACTGCAATAGCCGTCCAGAGTAAATGCCCAACCTGTAGGAAAAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGA

mRNA sequence

AAGGAAGAACCAAGCAACACACGTGTGACGCAATTATTGTCAATGCAAGAACCCTGGAGCTTCCTCTCTGCCGTGTCTAGATTTTCATTTCCAATCCCCAGCCCTTTCTCCATTTCTCTCTTTGTAATGGCTATTTTCCCCTCTCTTCACCTTCCACCTCTCAGCCCTTCGAACCCTAATTACAAATATCACAAATCTGCGAGGTAATCATCCTCTTCAATACATTTTTTTTCTGATCTAATCTATTCTATATATCACCATAAAATTTCAAGATATTTGCTAGCAAGTGTGGTATCGCTTCATCAACCGATTATTTCAGGTTGTTGAGGAGCTTCTAACTATAGATGAGTACTCGGGCAATGAGAGGACATACTGCAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTAAACAGCATGCCACCAACTGAGAACCGAGATCAGGGGGAGACGTCTCAATTTGGATTTCAGGAGGCACAAGTTAATCAACAACAGTCTGTACAGCCTGCAATGATCGACATTGAGGCCATTGATGACGATGTTATTGAATCATCCGCTAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAACATAGTTGATGTCGATGCAGAAGAGCGGAGCAGGGCGTCAAATAATAACCGGAGCAAGCGTAGGAGGGATGTGCCAAATCAACAAACTGTAAATTCTGATTTATTGATCAATTTGGAAGCCAGCAACAGCTCTATGAAAGAGAAGGCTGCTCCACCGAAGGAGCCCAATTTCAGTTGTCCAATATGCATGGGACCGTTGGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGTAAGGCATGCATCAAGACTGCAATAGCCGTCCAGAGTAAATGCCCAACCTGTAGGAAAAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGA

Coding sequence (CDS)

ATGAGTACTCGGGCAATGAGAGGACATACTGCAAGAGGTTATCATCGTAGGAAATCATTGGACTTGGACCTAAACAGCATGCCACCAACTGAGAACCGAGATCAGGGGGAGACGTCTCAATTTGGATTTCAGGAGGCACAAGTTAATCAACAACAGTCTGTACAGCCTGCAATGATCGACATTGAGGCCATTGATGACGATGTTATTGAATCATCCGCTAGAGCTTTTGCTGAAGCTAAAAATAAATCCAGACGGAATGCTAGGAAGAACATAGTTGATGTCGATGCAGAAGAGCGGAGCAGGGCGTCAAATAATAACCGGAGCAAGCGTAGGAGGGATGTGCCAAATCAACAAACTGTAAATTCTGATTTATTGATCAATTTGGAAGCCAGCAACAGCTCTATGAAAGAGAAGGCTGCTCCACCGAAGGAGCCCAATTTCAGTTGTCCAATATGCATGGGACCGTTGGTAGAAGAAACATCAACAAGGTGTGGTCATATTTTCTGTAAGGCATGCATCAAGACTGCAATAGCCGTCCAGAGTAAATGCCCAACCTGTAGGAAAAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGGACAAGCTTGGAGTGA

Protein sequence

MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTVNSDLLINLEASNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE
Homology
[Close]
BLAST of CmaCh19G001690 vs. Swiss-Prot
Match: RN151_MOUSE (RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.3e-07
Identity = 26/59 (44.07%), Postives = 34/59 (57.63%), Query Frame = 1 

Query: 140 APPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRV 199
           A P +  F C +C G L   T   C HIFCK CI   +A Q+ CP CRK VT ++++ V
Sbjct: 11  ASPPDCKFLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEVTRRKMVEV 69

[Close]
BLAST of CmaCh19G001690 vs. TrEMBL
Match: A0A151TMW3_CAJCA (52 kDa Ro protein OS=Cajanus cajan GN=KK1_021992 PE=4 SV=1)

HSP 1 Score: 225.3 bits (573), Expect = 6.7e-56
Identity = 128/209 (61.24%), Postives = 155/209 (74.16%), Query Frame = 1 

Query: 1   MSTRAMRGHT--ARGYHRRKS-LDLDLNSMPPTENRDQ-GETSQFGFQEAQVNQQQSV-Q 60
           MS+R  +G     R Y RRK+ LDLDLN +P  ENR+Q G ++Q G QEAQV QQ  V Q
Sbjct: 1   MSSRTNKGVALAVRSYRRRKADLDLDLNRVPTGENREQEGPSNQSGPQEAQVQQQPQVPQ 60

Query: 61  PAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVP 120
           P +ID+EAIDDDV+E +  AFAEAKN SRRN  + IVDVD+E+ +R ++NN++KRRR   
Sbjct: 61  PPLIDVEAIDDDVVECTPTAFAEAKNYSRRNRGRTIVDVDSEDPTRVADNNQNKRRRQ-S 120

Query: 121 NQQTVNSDLLINLEASNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKT 180
           N   +  D  INLE   SSMK+   PPKEP F+CPIC+GPLVEETSTRCGHIFCK CIK+
Sbjct: 121 NPTIIICDEYINLEGGGSSMKKPPEPPKEPVFNCPICIGPLVEETSTRCGHIFCKNCIKS 180

Query: 181 AIAVQSKCPTCRKRVTAKELIRVFLPGTS 205
           AI+ Q KCPTCRK++  KELIRVFLP TS
Sbjct: 181 AISAQGKCPTCRKKIVVKELIRVFLPSTS 208

[Close]
BLAST of CmaCh19G001690 vs. TrEMBL
Match: A0A061DV39_THECC (RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002857 PE=4 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 1.6e-54
Identity = 127/210 (60.48%), Postives = 154/210 (73.33%), Query Frame = 1 

Query: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQ-GETSQFGFQEAQVNQQQSVQPAMI 60
           MST  +RG + RGY RRK++ LDLN +PP+E R+Q G + Q G +E        V PA I
Sbjct: 1   MSTLEVRGPSLRGYRRRKAV-LDLN-VPPSEIREQEGTSQQAGSEELTSQPLPPVPPATI 60

Query: 61  DIEAIDDDVIESSARAFAEAKNKSRRN-ARKNIVDVDAEERSRASNNNRSKRRRDVPNQQ 120
           D+EA DDDVIESSARAFAEAKN SRR+  R  +VD+D+ + +R++NNN ++RRR  P+Q 
Sbjct: 61  DVEAFDDDVIESSARAFAEAKNNSRRSRGRTVLVDLDSGQLARSTNNNHNRRRRLPPSQT 120

Query: 121 TVNSDLLINLEASNSSMKEKAA----PPKEPNFSCPICMGPLVEETSTRCGHIFCKACIK 180
            +N D  INLE++  +M E+      PPKEP F+CPICMGPLVEE STRCGHIFCKACIK
Sbjct: 121 VINCDHYINLESTAQTMVEEIIKPQPPPKEPTFNCPICMGPLVEEMSTRCGHIFCKACIK 180

Query: 181 TAIAVQSKCPTCRKRVTAKELIRVFLPGTS 205
            AIA Q KCPTCRKRVT KELIRVFLP  S
Sbjct: 181 AAIAAQGKCPTCRKRVTVKELIRVFLPSAS 208

[Close]
BLAST of CmaCh19G001690 vs. TrEMBL
Match: C6T066_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_12G028700 PE=2 SV=1)

HSP 1 Score: 217.2 bits (552), Expect = 1.8e-53
Identity = 126/211 (59.72%), Postives = 154/211 (72.99%), Query Frame = 1 

Query: 1   MSTRAMRGHTARGYHRRKS-LDLDLNSMPPTENRDQ-GETSQFGFQEAQVNQQQ-SVQPA 60
           MS+RA +G   R Y RRK+ LDLDLN +P  ENR+Q G ++Q   +E QV QQQ + QP 
Sbjct: 1   MSSRAGKGPAVRSYRRRKTALDLDLNRVPAGENREQEGPSTQSVPREVQVEQQQQATQPP 60

Query: 61  MIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQ 120
           MID+EAIDDDV+E + RAFAEAKN SRR  R+ IVDVD E+++R     R+KRRR++PN 
Sbjct: 61  MIDVEAIDDDVVECTPRAFAEAKNNSRRVRRRTIVDVDLEDQTR-----RNKRRRELPNL 120

Query: 121 QTVNSDLLINLEASNSSM----KEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACI 180
             +N D  INLE  +SSM    K+   PPKE  F+CPICMGP+V E STRCGHIFCK CI
Sbjct: 121 -IINCDKYINLEGGSSSMEQSFKKPPEPPKELVFNCPICMGPMVHEMSTRCGHIFCKDCI 180

Query: 181 KTAIAVQSKCPTCRKRVTAKELIRVFLPGTS 205
           K AI+ Q KCPTCRK+V AK+LIRV+LP TS
Sbjct: 181 KAAISAQGKCPTCRKKVVAKDLIRVYLPSTS 205

[Close]
BLAST of CmaCh19G001690 vs. TrEMBL
Match: A0A0B2SGJ1_GLYSO (E3 ubiquitin-protein ligase RING2-like protein OS=Glycine soja GN=glysoja_047485 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.4e-53
Identity = 125/211 (59.24%), Postives = 154/211 (72.99%), Query Frame = 1 

Query: 1   MSTRAMRGHTARGYHRRKS-LDLDLNSMPPTENRDQ-GETSQFGFQEAQVNQQQSV-QPA 60
           MS+RA +G   R Y RRK+ LDLDLN +P  ENR+Q G ++Q   QE Q+ QQ  V QP 
Sbjct: 1   MSSRAGKGPAIRSYRRRKTALDLDLNRLPAGENREQEGPSTQAVPQEIQLEQQPQVTQPP 60

Query: 61  MIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQ 120
           MID+EAIDDDV+E + RAFAEAKN SRR  R+ +VD+D E+++R     R+KRRR++PN 
Sbjct: 61  MIDVEAIDDDVVECTPRAFAEAKNNSRRIRRRTVVDIDLEDQTR-----RNKRRRELPNL 120

Query: 121 QTVNSDLLINLEASNSSM----KEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACI 180
             +N D  INLE S+SSM    K+   PPKE  F+CPICMGP+V E STRCGHIFCK CI
Sbjct: 121 -IINCDKYINLEGSSSSMGGSVKKTPEPPKELVFNCPICMGPMVHEMSTRCGHIFCKDCI 180

Query: 181 KTAIAVQSKCPTCRKRVTAKELIRVFLPGTS 205
           K AI+ Q KCPTCRK+V AK+LIRV+LP TS
Sbjct: 181 KAAISAQGKCPTCRKKVVAKDLIRVYLPSTS 205

[Close]
BLAST of CmaCh19G001690 vs. TrEMBL
Match: I1LIV9_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_11G103800 PE=4 SV=1)

HSP 1 Score: 216.9 bits (551), Expect = 2.4e-53
Identity = 125/211 (59.24%), Postives = 154/211 (72.99%), Query Frame = 1 

Query: 1   MSTRAMRGHTARGYHRRKS-LDLDLNSMPPTENRDQ-GETSQFGFQEAQVNQQQSV-QPA 60
           MS+RA +G   R Y RRK+ LDLDLN +P  ENR+Q G ++Q   QE Q+ QQ  V QP 
Sbjct: 1   MSSRAGKGPAIRSYRRRKTALDLDLNRLPAGENREQEGPSTQAVPQEIQLEQQPQVTQPP 60

Query: 61  MIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQ 120
           MID+EAIDDDV+E + RAFAEAKN SRR  R+ +VD+D E+++R     R+KRRR++PN 
Sbjct: 61  MIDVEAIDDDVVECTPRAFAEAKNNSRRIRRRTVVDIDLEDQTR-----RNKRRRELPNL 120

Query: 121 QTVNSDLLINLEASNSSM----KEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACI 180
             +N D  INLE S+SSM    K+   PPKE  F+CPICMGP+V E STRCGHIFCK CI
Sbjct: 121 -IINCDKYINLEGSSSSMGGSVKKTPEPPKELVFNCPICMGPMVHEMSTRCGHIFCKDCI 180

Query: 181 KTAIAVQSKCPTCRKRVTAKELIRVFLPGTS 205
           K AI+ Q KCPTCRK+V AK+LIRV+LP TS
Sbjct: 181 KAAISAQGKCPTCRKKVVAKDLIRVYLPSTS 205

[Close]
BLAST of CmaCh19G001690 vs. TAIR10
Match: AT5G48655.2 (AT5G48655.2 RING/U-box superfamily protein)

HSP 1 Score: 159.5 bits (402), Expect = 2.3e-39
Identity = 103/211 (48.82%), Postives = 139/211 (65.88%), Query Frame = 1 

Query: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMID 60
           M+T  +R    RG  RRK++ +DLN++P  +   +G ++        +   Q   P MID
Sbjct: 1   MNTSEVR--VPRGNRRRKAV-IDLNAVPVDQ---EGTSASVRTLTVPITPSQPA-PTMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKN--IVDVDAEERSRASNNNRSKRRRDVPNQQ 120
           ++AI+DDVIESSA AFAEAK+KS RNAR+   +VDV++   +R   N  +KRRR +P+ +
Sbjct: 61  VDAIEDDVIESSASAFAEAKSKS-RNARRRPLMVDVESGGTTRFPANISNKRRR-IPSSE 120

Query: 121 TV------NSDLLINLEASNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKAC 180
           +V      + +  +N+ +  S  K  A PP+EP F+CPICM P  EE ST+CGHIFCK C
Sbjct: 121 SVIDCEHASVNDEVNMSSRVSRSKAPAPPPEEPKFTCPICMCPFTEEMSTKCGHIFCKGC 180

Query: 181 IKTAIAVQSKCPTCRKRVTAKELIRVFLPGT 204
           IK AI+ Q KCPTCRK+VTAKELIRVFLP T
Sbjct: 181 IKMAISRQGKCPTCRKKVTAKELIRVFLPTT 202

[Close]
BLAST of CmaCh19G001690 vs. TAIR10
Match: AT3G07200.1 (AT3G07200.1 RING/U-box superfamily protein)

HSP 1 Score: 132.9 bits (333), Expect = 2.3e-31
Identity = 90/178 (50.56%), Postives = 116/178 (65.17%), Query Frame = 1 

Query: 30  TENRDQGETSQFGFQEAQVNQQQSVQPAMIDIEAI--DDDVIESSARAFAEAKNKSRRNA 89
           T+N  QG+  Q    +A    Q    P  I++ AI  DDDV+ES+A AFA+AKNKSR +A
Sbjct: 19  TQNEHQGD--QQVADQAPTVPQIVATPPRINVVAIEDDDDVVESTASAFAQAKNKSR-SA 78

Query: 90  RKNIVDVDAEERSRASNNNRSKRRRDVPNQQTVNSDLLINLEASNSSMKEKA-APP-KEP 149
           R+    VD E    ++  NRS RRR   +Q +V+S  L      N   K KA APP +EP
Sbjct: 79  RRGSQVVDVE----SAGANRSTRRRS--DQTSVDSVEL------NKPRKSKAVAPPVEEP 138

Query: 150 NFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFLPGT 204
            FSCPIC+ P  +E ST+CGHIFCK CIK A+++Q+KCPTCRK++T K+LIRVFLP T
Sbjct: 139 KFSCPICLCPFTQEVSTKCGHIFCKKCIKNALSLQAKCPTCRKKITVKDLIRVFLPTT 181

[Close]
BLAST of CmaCh19G001690 vs. TAIR10
Match: AT5G05130.1 (AT5G05130.1 DNA/RNA helicase protein)

HSP 1 Score: 50.4 bits (119), Expect = 1.5e-06
Identity = 23/51 (45.10%), Postives = 30/51 (58.82%), Query Frame = 1 

Query: 146 NFSCPICMGPLVEETSTRCGHIFCKACI-KTAIAVQSKCPTCRKRVTAKEL 196
           +F CPIC+ P      TRC HIFC+ACI +T    +  CP CR  +T  +L
Sbjct: 613 DFDCPICISPPTNIIITRCAHIFCRACILQTLQRSKPLCPLCRGSLTQSDL 663

[Close]
BLAST of CmaCh19G001690 vs. TAIR10
Match: AT1G18660.4 (AT1G18660.4 zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 49.3 bits (116), Expect = 3.3e-06
Identity = 20/56 (35.71%), Postives = 31/56 (55.36%), Query Frame = 1 

Query: 132 NSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQSKCPTCR 188
           NS  K      +  +F C +C+  L E  +T CGH FC++C+  ++   +KCP CR
Sbjct: 179 NSMRKTHGMAERSDDFDCTVCLKLLYEPATTPCGHTFCRSCLFQSMDRGNKCPLCR 234

[Close]
BLAST of CmaCh19G001690 vs. NCBI nr
Match: gi|449453284|ref|XP_004144388.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus])

HSP 1 Score: 361.3 bits (926), Expect = 1.1e-96
Identity = 187/206 (90.78%), Postives = 193/206 (93.69%), Query Frame = 1 

Query: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMID 60
           MST+AMRGHT RGYHRRKSLDLDLNSMPPTENRDQGETSQ   Q+AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHTTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAEERSR SNNNRSKRRRDV N+ +V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120

Query: 121 NSDLLINLEASNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180
           NSDLLINLEASNSSMK K APPKEP FSCPICMGPLVEETSTRCGHIFCKACI+ AI VQ
Sbjct: 121 NSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTRCGHIFCKACIRAAIGVQ 180

Query: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 207
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of CmaCh19G001690 vs. NCBI nr
Match: gi|659120828|ref|XP_008460369.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo])

HSP 1 Score: 358.2 bits (918), Expect = 9.5e-96
Identity = 185/206 (89.81%), Postives = 192/206 (93.20%), Query Frame = 1 

Query: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMID 60
           MST+AMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQ   Q+AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAEERSR SNNNRSKRRRDV N+ +V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAEERSRVSNNNRSKRRRDVSNRPSV 120

Query: 121 NSDLLINLEASNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180
           NSDLLINLEASNSSMK K APPKEP FSCPICMGPLVEETST+CGHIFCKACI+ AI VQ
Sbjct: 121 NSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTKCGHIFCKACIRAAIGVQ 180

Query: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 207
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]
BLAST of CmaCh19G001690 vs. NCBI nr
Match: gi|659120837|ref|XP_008460373.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo])

HSP 1 Score: 352.1 bits (902), Expect = 6.8e-94
Identity = 184/206 (89.32%), Postives = 191/206 (92.72%), Query Frame = 1 

Query: 1   MSTRAMRGHTARGYHRRKSLDLDLNSMPPTENRDQGETSQFGFQEAQVNQQQSVQPAMID 60
           MST+AMRGH  RGYHRRKSLDLDLNSMPPTENRDQGETSQ   Q+AQVNQQQ VQPAMID
Sbjct: 1   MSTQAMRGHNTRGYHRRKSLDLDLNSMPPTENRDQGETSQLRLQDAQVNQQQPVQPAMID 60

Query: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRSKRRRDVPNQQTV 120
           IEAIDDDVIESSARAFAEAKNKSRRNARKN+VDVDAE RSR SNNNRSKRRRDV N+ +V
Sbjct: 61  IEAIDDDVIESSARAFAEAKNKSRRNARKNVVDVDAE-RSRVSNNNRSKRRRDVSNRPSV 120

Query: 121 NSDLLINLEASNSSMKEKAAPPKEPNFSCPICMGPLVEETSTRCGHIFCKACIKTAIAVQ 180
           NSDLLINLEASNSSMK K APPKEP FSCPICMGPLVEETST+CGHIFCKACI+ AI VQ
Sbjct: 121 NSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGPLVEETSTKCGHIFCKACIRAAIGVQ 180

Query: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 207
           SKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 181 SKCPTCRKRVTAKELIRVFLPGTSLE 205

[Close]
BLAST of CmaCh19G001690 vs. NCBI nr
Match: gi|502144767|ref|XP_004505743.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cicer arietinum])

HSP 1 Score: 237.3 bits (604), Expect = 2.4e-59
Identity = 136/219 (62.10%), Postives = 157/219 (71.69%), Query Frame = 1 

Query: 1   MSTRAMRGHTARGYHRRKS-LDLDLNSMPPT-----ENRDQ-GETSQFGFQEAQVNQQQS 60
           MS+R  R    R Y RRK+ LDLDLN +P       ENR+Q G ++Q G QE +V   Q 
Sbjct: 1   MSSRTSRVPAVRSYRRRKAVLDLDLNRVPAGDNPAGENREQEGPSTQLGPQEVEVQANQQ 60

Query: 61  -----VQPAMIDIEAIDDDVIESSARAFAEAKNKSRRNARKNIVDVDAEERSRASNNNRS 120
                + P MID+EAIDDDVIESS RAFAEAKN SRRN  + IVDVD EE+SR  NNNR+
Sbjct: 61  PLIVQLPPPMIDVEAIDDDVIESSPRAFAEAKNNSRRNRGRTIVDVDLEEQSRVINNNRN 120

Query: 121 KRRRDVPNQQTVNSDLLINLEASNSS----MKEKAAPPKEPNFSCPICMGPLVEETSTRC 180
           KRRR+ PNQ  +N DL INLE  +SS    +K+   PPKEP FSCPICMGPLVEE STRC
Sbjct: 121 KRRREPPNQSIINCDLYINLEGGSSSTLESVKKPPEPPKEPVFSCPICMGPLVEEMSTRC 180

Query: 181 GHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFLPGT 204
           GHIFCK CIK AI+ Q+KCPTCRK++T KELIRVFLP T
Sbjct: 181 GHIFCKTCIKAAISAQAKCPTCRKKITVKELIRVFLPTT 219

[Close]
BLAST of CmaCh19G001690 vs. NCBI nr
Match: gi|1012033623|ref|XP_015952624.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like [Arachis duranensis])

HSP 1 Score: 225.3 bits (573), Expect = 9.6e-56
Identity = 133/222 (59.91%), Postives = 163/222 (73.42%), Query Frame = 1 

Query: 1   MSTRAMRGHTARGYHRRKS-LDLDLNSMPPTENRD-QGETSQFGFQEAQVNQQQSV---- 60
           MSTR+ RG   + Y RRK+ L++DLN  P  ENR+ +G ++Q   Q+ Q +QQQ      
Sbjct: 1   MSTRSGRG-AIKSYRRRKTGLEIDLNQEPGGENRELEGPSTQVEPQQVQASQQQQAVQMP 60

Query: 61  ---QPAMIDIEAI-DDDVIESSARAFAEAKNKSRRNARKN----IVDVDAEERSRASNNN 120
              QPA ID+EAI DDDV+ESS RAFAEAKN +R NAR+N    IVDVD E+++R +N  
Sbjct: 61  QPAQPATIDVEAIVDDDVVESSPRAFAEAKNNARNNARRNRERTIVDVDLEDQNRITNYC 120

Query: 121 RSKRRRDVPNQQTVNSDLLINLEASNSSMKEKAA----PPKEPNFSCPICMGPLVEETST 180
           R+KRRR+  ++  +N DL INLE+S+SSM+E       PPKEP F+CPICMGPLVEE ST
Sbjct: 121 RNKRRRESSSRTVINCDLYINLESSSSSMREPVQKAPEPPKEPVFNCPICMGPLVEEMST 180

Query: 181 RCGHIFCKACIKTAIAVQSKCPTCRKRVTAKELIRVFLPGTS 205
           RCGHIFCK+CIK AI+ QSKCPTCRKRVT KELIRVFLP TS
Sbjct: 181 RCGHIFCKSCIKAAISAQSKCPTCRKRVTVKELIRVFLPSTS 221

The following BLAST results are available for this feature:
BLAST of CmaCh19G001690 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RN151_MOUSE1.3e-0744.07RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1[more]
BLAST of CmaCh19G001690 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A151TMW3_CAJCA6.7e-5661.2452 kDa Ro protein OS=Cajanus cajan GN=KK1_021992 PE=4 SV=1[more]
A0A061DV39_THECC1.6e-5460.48RING/U-box superfamily protein, putative OS=Theobroma cacao GN=TCM_002857 PE=4 S... [more]
C6T066_SOYBN1.8e-5359.72Uncharacterized protein OS=Glycine max GN=GLYMA_12G028700 PE=2 SV=1[more]
A0A0B2SGJ1_GLYSO2.4e-5359.24E3 ubiquitin-protein ligase RING2-like protein OS=Glycine soja GN=glysoja_047485... [more]
I1LIV9_SOYBN2.4e-5359.24Uncharacterized protein OS=Glycine max GN=GLYMA_11G103800 PE=4 SV=1[more]
BLAST of CmaCh19G001690 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48655.22.3e-3948.82 RING/U-box superfamily protein[more]
AT3G07200.12.3e-3150.56 RING/U-box superfamily protein[more]
AT5G05130.11.5e-0645.10 DNA/RNA helicase protein[more]
AT1G18660.43.3e-0635.71 zinc finger (C3HC4-type RING finger) family protein[more]
BLAST of CmaCh19G001690 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449453284|ref|XP_004144388.1|1.1e-9690.78PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus][more]
gi|659120828|ref|XP_008460369.1|9.5e-9689.81PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo][more]
gi|659120837|ref|XP_008460373.1|6.8e-9489.32PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo][more]
gi|502144767|ref|XP_004505743.1|2.4e-5962.10PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cicer arietinum][more]
gi|1012033623|ref|XP_015952624.1|9.6e-5659.91PREDICTED: E3 ubiquitin-protein ligase RNF4-like [Arachis duranensis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR017907Znf_RING_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0008270zinc ion binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
biological_process GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process
biological_process GO:0016567 protein ubiquitination
cellular_component GO:0005575 cellular_component
cellular_component GO:0005634 nucleus
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0016874 ligase activity
molecular_function GO:0061630 ubiquitin protein ligase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmaCh19G001690.1CmaCh19G001690.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 148..187
score: 1.
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 149..186
score: 6.
IPR001841Zinc finger, RING-typePROFILEPS50089ZF_RING_2coord: 149..187
score: 12
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3DG3DSA:3.30.40.10coord: 131..197
score: 1.5
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 164..173
scor
NoneNo IPR availablePANTHERPTHR23041RING FINGER DOMAIN-CONTAININGcoord: 1..201
score: 2.4
NoneNo IPR availablePANTHERPTHR23041:SF63C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATEDcoord: 1..201
score: 2.4
NoneNo IPR availableunknownSSF57850RING/U-boxcoord: 144..193
score: 7.07

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmaCh19G001690Cucsa.150150Cucumber (Gy14) v1cgycmaB0413
CmaCh19G001690Cla002709Watermelon (97103) v1cmawmB492
CmaCh19G001690Csa3G630250Cucumber (Chinese Long) v2cmacuB509
CmaCh19G001690MELO3C022715Melon (DHL92) v3.5.1cmameB467
CmaCh19G001690ClCG07G002050Watermelon (Charleston Gray)cmawcgB467
CmaCh19G001690CSPI03G27620Wild cucumber (PI 183967)cmacpiB516
CmaCh19G001690CmoCh14G019580Cucurbita moschata (Rifu)cmacmoB501
CmaCh19G001690CmoCh19G001860Cucurbita moschata (Rifu)cmacmoB508
CmaCh19G001690CmoCh02G017180Cucurbita moschata (Rifu)cmacmoB523
CmaCh19G001690Lsi05G018550Bottle gourd (USVL1VR-Ls)cmalsiB487
CmaCh19G001690Lsi05G011260Bottle gourd (USVL1VR-Ls)cmalsiB486
CmaCh19G001690Cp4.1LG08g02700Cucurbita pepo (Zucchini)cmacpeB554
CmaCh19G001690Cp4.1LG15g01440Cucurbita pepo (Zucchini)cmacpeB522
CmaCh19G001690Cp4.1LG05g00670Cucurbita pepo (Zucchini)cmacpeB543
CmaCh19G001690MELO3C006300.2Melon (DHL92) v3.6.1cmamedB559
CmaCh19G001690MELO3C022715.2Melon (DHL92) v3.6.1cmamedB542
CmaCh19G001690CsaV3_3G030010Cucumber (Chinese Long) v3cmacucB0614
CmaCh19G001690CsaV3_3G010820Cucumber (Chinese Long) v3cmacucB0624
CmaCh19G001690Cla97C05G083820Watermelon (97103) v2cmawmbB537
CmaCh19G001690Cla97C07G130330Watermelon (97103) v2cmawmbB540
CmaCh19G001690Bhi05G000048Wax gourdcmawgoB0653
CmaCh19G001690CsGy3G010780Cucumber (Gy14) v2cgybcmaB384
CmaCh19G001690CsGy3G025660Cucumber (Gy14) v2cgybcmaB375
CmaCh19G001690Carg06301Silver-seed gourdcarcmaB1322
CmaCh19G001690Carg08896Silver-seed gourdcarcmaB1082
CmaCh19G001690Carg26386Silver-seed gourdcarcmaB0403
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmaCh19G001690CmaCh14G019040Cucurbita maxima (Rimu)cmacmaB259
CmaCh19G001690CmaCh02G016740Cucurbita maxima (Rimu)cmacmaB450
The following block(s) are covering this gene:
GeneOrganismBlock
CmaCh19G001690Wax gourdcmawgoB0637
CmaCh19G001690Cucumber (Gy14) v1cgycmaB0140
CmaCh19G001690Cucumber (Chinese Long) v2cmacuB531
CmaCh19G001690Watermelon (Charleston Gray)cmawcgB451
CmaCh19G001690Bottle gourd (USVL1VR-Ls)cmalsiB480
CmaCh19G001690Cucumber (Gy14) v2cgybcmaB948