Cla002709.1 (mRNA) Watermelon (97103) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cla002709
Type	mRNA
Organism	Citrullus. lanatus (Watermelon (97103) v1)
Description	Ubiquitin-protein ligase/zinc ion binding protein (AHRD V1 -- F6M732_WHEAT); contains Interpro domain(s) IPR018957 Zinc finger, C3HC4 RING-type
Location	Chr7 : 254627 .. 256222 (-)
Sequence length	429

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGACTGTAGCTCTCAAGAAGCTCTTGTTCGATGCGTCTGTCAATCACTTGTGGTTTGCTTGCTTCTCTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGATCAAGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAATCATCAACCTGTAAATTCTGATTTATTGATCAATTTGGAGGCCAGCAACAGCTCTATGGTACTGGGACAACTTATACCTTTGTTACTCTTCTTTTTGTGCAAGATTTTTCCTGTGTCGTTAGGTGTAGTGTAGATCATATAATTGTCCCTTGTGATTGCAGTTTTTAGCACAAAAACAAATTTTGGCATGTTCTCCCTTAACCTATGTTTGTATTTTCTCGACTAGTTCTCATGGCTATTTCTTGCATATACAATACATCTGGTCGCTTTCATTTCTCCCCTTTGGAAAAGTTAAGTTAGTTTGTTTTATGGTTTTTTAACAATAAGTCACTTACCTCTCACTTTTTCTCTCTCTATGTTTGAGTGCTGCTTTTCTTTTGGTTGATTTATCTTCAAAGTTAGGGTTGTTCACAGGTTGAATTGATTTGGTTTATCTCGTAATGGGGAACTAAACCATATGTTTTGGTTTGATTCATTTGATTATATTTGAAAAAGATAAGGATGGATCATGGATGGTTTGTGCTAAATAATCAGAAACTAAACTAAAAGATGCCTTGATTAGTCTAGTTTTCACTAGGTTTAACTTTTTTCTTGTGACTACCAGTGTTCATCGGTCAGTGTTGGCCTCGCTGACCAGTGACCAATCAGTTTTTCTCAGTTGTTGATGCTCAGTTTTTGAGAAATAATTGGAAAACAGAGATGGAGAGGAAGAGAAATGGGGAGGAGGGTTTAGGGATATGGACACAAATGAGAGAGGAAGAATAGAGAAAGAATTAATTTTTTCTTGTGACTAGCGGTGTTCATCGGTCAGTCGGTGATGCTCAGTTTTTGAGAAATAATTGGAAAACAGAGATGGAGAGGAAGAGAAATGGGGAGGAGGGTTTAGGGATATGGCCACAAATGAGAGAGGAAGAATAGAGAGAGAATTAATTTTTTTTTAAACCAGCAACTGGTTTCCGCCTTTTCTTTTCTTCTAATTTTTTTTTAACGTTGGGTTGGGCGGTCGTATTTTCTATAAGAAAAAACTGACTTTGACCAATCAATCCTTGGTTGGATTTGTTTTCAGTCCAATTTTATTCCCCCCTGCTTGTGACTAAACTCTTCAATTTCTAATTGTAGCATCTTATTAGCTGTTAGTGTTGGAAATGTGATTTTGTGTTGAAAATGGGATTATGTCTCAAGTGCTTAATATCGAGCCAACATGTGATTTCTGTGCTATTGGCAGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAATTGTCCAATATGCATGGGTCCGTTGGTAGAGGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATTAGGGCTGCAATAGCCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGCACAAGCTTGGAATGA

mRNA sequence

ATGGACTGTAGCTCTCAAGAAGCTCTTGTTCGATGCGTCTGTCAATCACTTGTGGTTTGCTTGCTTCTCTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGATCAAGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAATCATCAACCTGTAAATTCTGATTTATTGATCAATTTGGAGGCCAGCAACAGCTCTATGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAATTGTCCAATATGCATGGGTCCGTTGGTAGAGGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATTAGGGCTGCAATAGCCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGCACAAGCTTGGAATGA

Coding sequence (CDS)

ATGGACTGTAGCTCTCAAGAAGCTCTTGTTCGATGCGTCTGTCAATCACTTGTGGTTTGCTTGCTTCTCTCATTCTCTCATCTTCTAATTGTTGCAGAAGAGCGGATCAAGGTGTCAAATAATAACCGGAGCAAGCGTAGGAGAGATGTGTCTAATCATCAACCTGTAAATTCTGATTTATTGATCAATTTGGAGGCCAGCAACAGCTCTATGAAAGTGAAGCCTGCTCCACCGAAGGAGCCCAAATTCAATTGTCCAATATGCATGGGTCCGTTGGTAGAGGAAACATCAACAAGGTGTGGTCATATTTTCTGCAAGGCATGCATTAGGGCTGCAATAGCCGTCCAGAGTAAATGCCCAACATGTAGGAAGAGAGTAACTGCCAAAGAACTGATTAGAGTATTCCTTCCTGGCACAAGCTTGGAATGA

Protein sequence

MDCSSQEALVRCVCQSLVVCLLLSFSHLLIVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE

Homology

[Close]

BLAST of Cla002709 vs. Swiss-Prot
Match: RN151_MOUSE (RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 7.9e-09
Identity = 27/59 (45.76%), Postives = 33/59 (55.93%), Query Frame = 1


Query: 76  APPKEPKFNCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRV 135
           A P + KF C +C G L   T   C HIFCK CI   +A Q+ CP CRK VT ++++ V
Sbjct: 11  ASPPDCKFLCSVCHGVLKRPTRLPCSHIFCKKCIFRWLARQNTCPCCRKEVTRRKMVEV 69

[Close]

BLAST of Cla002709 vs. Swiss-Prot
Match: RNF4_MOUSE (E3 ubiquitin-protein ligase RNF4 OS=Mus musculus GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 58.9 bits (141), Expect = 5.1e-08
Identity = 40/148 (27.03%), Postives = 68/148 (45.95%), Query Frame = 1


Query: 7   EALVRCVCQSLV-VCLLLSFSHLLIVAEERIKVSNNNRSKRRRDVSNHQPVNSD------ 66
           + +V   C+SL  V + L+ +  +++ EER +   N R + R+D ++   V+SD      
Sbjct: 48  DEIVDLTCESLEPVVVDLTHNDSVVIVEERRRPRRNGR-RLRQDHADSCVVSSDDEELSR 107

Query: 67  ---LLINLEASNSSMKVKPAPPKEP-KFNCPICMGPLVEET-------STRCGHIFCKAC 126
              + +      S+       P+     +CPICM    E         ST CGH+FC  C
Sbjct: 108 DKDVYVTTHTPRSTKDDGATGPRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQC 167

Query: 127 IRAAIAVQSKCPTCRKRVTAKELIRVFL 137
           +R ++   + CPTCRK++  K    +++
Sbjct: 168 LRDSLKNANTCPTCRKKINHKRYHPIYI 194

[Close]

BLAST of Cla002709 vs. Swiss-Prot
Match: RNF4_RAT (E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus GN=Rnf4 PE=1 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.7e-08
Identity = 43/151 (28.48%), Postives = 71/151 (47.02%), Query Frame = 1


Query: 7   EALVRCVCQSLV-VCLLLSFSHLLIVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLE 66
           + +V   C+SL  V + L+ +  +++ EER +   N R + R+D ++   V+SD   + E
Sbjct: 48  DEIVDLTCESLEPVVVDLTHNDSVVIVEERRRPRRNGR-RLRQDHADSCVVSSD---DEE 107

Query: 67  AS-NSSMKVKPAPPKEPK------------FNCPICMGPLVEET-------STRCGHIFC 126
            S +  + V    P+  K             +CPICM    E         ST CGH+FC
Sbjct: 108 LSKDKDVYVTTHTPRSTKDEGTTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFC 167

Query: 127 KACIRAAIAVQSKCPTCRKRVTAKELIRVFL 137
             C+R ++   + CPTCRK++  K    +++
Sbjct: 168 SQCLRDSLKNANTCPTCRKKINHKRYHPIYI 194

[Close]

BLAST of Cla002709 vs. Swiss-Prot
Match: RNF4_HUMAN (E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens GN=RNF4 PE=1 SV=1)

HSP 1 Score: 52.8 bits (125), Expect = 3.7e-06
Identity = 32/114 (28.07%), Postives = 51/114 (44.74%), Query Frame = 1


Query: 32  AEERIKVSNNNRSKRRRDV--SNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICM 91
           A+  +  S++    R RDV  + H P N+           +  ++P+       +CPICM
Sbjct: 88  ADSCVVSSDDEELSRDRDVYVTTHTPRNA-------RDEGATGLRPSGT----VSCPICM 147

Query: 92  GPLVEET-------STRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFL 137
               E         ST CGH+FC  C+R ++   + CPTCRK++  K    +++
Sbjct: 148 DGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI 190

[Close]

BLAST of Cla002709 vs. Swiss-Prot
Match: RO52_HUMAN (E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 8.2e-06
Identity = 23/48 (47.92%), Postives = 25/48 (52.08%), Query Frame = 1


Query: 85  CPICMGPLVEETSTRCGHIFCKACI-RAAIAVQSKCPTCRKRVTAKEL 132
           CPIC+ P VE  S  CGH FC+ CI +      S CP CR+R   K L
Sbjct: 16  CPICLDPFVEPVSIECGHSFCQECISQVGKGGGSVCPVCRQRFLLKNL 63

[Close]

BLAST of Cla002709 vs. TrEMBL
Match: B7FGG8_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g074240 PE=2 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 28  LLIVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNS----SMKVKPAPPKEPKF 87
           ++  AEE+I++SNNNR+KRRR+       N DL INL+AS+S    S+K  P PPKEP F
Sbjct: 131 VMFFAEEQIRLSNNNRNKRRRESPKRSIFNCDLYINLDASSSNTMESVKKPPEPPKEPVF 190

Query: 88  NCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
            CPICMGP+VEE STRCGHIFCK+CI+AAI+ Q+KCPTCRK++T KELIRVFLP T+
Sbjct: 191 TCPICMGPMVEEMSTRCGHIFCKSCIKAAISAQAKCPTCRKKITVKELIRVFLPTTA 247

[Close]

BLAST of Cla002709 vs. TrEMBL
Match: A0A067K272_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17518 PE=4 SV=1)

HSP 1 Score: 160.2 bits (404), Expect = 1.8e-36
Identity = 76/117 (64.96%), Postives = 89/117 (76.07%), Query Frame = 1


Query: 30  IVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVK------PAPPKEPKF 89
           ++A    +++ NN +KRRR  SNH  +N +  +NLE+S SSM+        P PPKEP F
Sbjct: 110 VIAGRTTRLTYNNPNKRRRSPSNHAVINCEHYVNLESSGSSMRDNAQQLQPPPPPKEPTF 169

Query: 90  NCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
           NCPICMGP VEETST+CGHIFCKACIRAAI VQSKCPTCRK+VT KELIRVFLP TS
Sbjct: 170 NCPICMGPFVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKKVTVKELIRVFLPATS 226

[Close]

BLAST of Cla002709 vs. TrEMBL
Match: B7FMT2_MEDTR (Uncharacterized protein OS=Medicago truncatula GN=MTR_4g074240 PE=2 SV=1)

HSP 1 Score: 157.9 bits (398), Expect = 9.0e-36
Identity = 74/112 (66.07%), Postives = 90/112 (80.36%), Query Frame = 1


Query: 33  EERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNS----SMKVKPAPPKEPKFNCPIC 92
           EE+I++SNNNR+KRRR+       N DL INL+AS+S    S+K  P PPKEP F CPIC
Sbjct: 131 EEQIRLSNNNRNKRRRESPKRSIFNCDLYINLDASSSNTMESVKKPPEPPKEPVFTCPIC 190

Query: 93  MGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
           MGP+VEE STRCGHIFCK+CI+AAI+ Q+KCPTCRK++T KELIRVFLP T+
Sbjct: 191 MGPMVEEMSTRCGHIFCKSCIKAAISAQAKCPTCRKKITVKELIRVFLPTTA 242

[Close]

BLAST of Cla002709 vs. TrEMBL
Match: A0A151TMW3_CAJCA (52 kDa Ro protein OS=Cajanus cajan GN=KK1_021992 PE=4 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 1.4e-33
Identity = 71/109 (65.14%), Postives = 85/109 (77.98%), Query Frame = 1


Query: 32  AEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGP 91
           +E+  +V++NN++KRRR  SN   +  D  INLE   SSMK  P PPKEP FNCPIC+GP
Sbjct: 101 SEDPTRVADNNQNKRRRQ-SNPTIIICDEYINLEGGGSSMKKPPEPPKEPVFNCPICIGP 160

Query: 92  LVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
           LVEETSTRCGHIFCK CI++AI+ Q KCPTCRK++  KELIRVFLP TS
Sbjct: 161 LVEETSTRCGHIFCKNCIKSAISAQGKCPTCRKKIVVKELIRVFLPSTS 208

[Close]

BLAST of Cla002709 vs. TrEMBL
Match: B9T3C7_RICCO (RING finger protein, putative OS=Ricinus communis GN=RCOM_1750200 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 4.2e-33
Identity = 71/103 (68.93%), Postives = 81/103 (78.64%), Query Frame = 1


Query: 43  RSKRRRDVSNHQPVNSDLLINLEASNSSMKVK-----PAPPKEPKFNCPICMGPLVEETS 102
           ++KRRR  SN   +N D  +NLE+S+SSM+       P PPKEP FNCPICMGP +EETS
Sbjct: 120 QNKRRRVSSNQTIINCDHYVNLESSSSSMRDNIQPRPPPPPKEPTFNCPICMGPFIEETS 179

Query: 103 TRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
           T+CGHIFCKACI+ AI VQSKCPTCRKRVT KELIRVFLP TS
Sbjct: 180 TKCGHIFCKACIKTAIGVQSKCPTCRKRVTIKELIRVFLPATS 222

[Close]

BLAST of Cla002709 vs. NCBI nr
Match: gi|449453284|ref|XP_004144388.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus])

HSP 1 Score: 213.8 bits (543), Expect = 2.0e-52
Identity = 104/111 (93.69%), Postives = 106/111 (95.50%), Query Frame = 1


Query: 32  AEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGP 91
           AEER +VSNNNRSKRRRDVSN   VNSDLLINLEASNSSMKVKPAPPKEPKF+CPICMGP
Sbjct: 96  AEERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGP 155

Query: 92  LVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE 143
           LVEETSTRCGHIFCKACIRAAI VQSKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 156 LVEETSTRCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]

BLAST of Cla002709 vs. NCBI nr
Match: gi|659120828|ref|XP_008460369.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 4.4e-52
Identity = 103/111 (92.79%), Postives = 106/111 (95.50%), Query Frame = 1


Query: 32  AEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMGP 91
           AEER +VSNNNRSKRRRDVSN   VNSDLLINLEASNSSMKVKPAPPKEPKF+CPICMGP
Sbjct: 96  AEERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMGP 155

Query: 92  LVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE 143
           LVEETST+CGHIFCKACIRAAI VQSKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 156 LVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFLPGTSLE 206

[Close]

BLAST of Cla002709 vs. NCBI nr
Match: gi|659120837|ref|XP_008460373.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo])

HSP 1 Score: 209.5 bits (532), Expect = 3.8e-51
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 1


Query: 31  VAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVKPAPPKEPKFNCPICMG 90
           V  ER +VSNNNRSKRRRDVSN   VNSDLLINLEASNSSMKVKPAPPKEPKF+CPICMG
Sbjct: 94  VDAERSRVSNNNRSKRRRDVSNRPSVNSDLLINLEASNSSMKVKPAPPKEPKFSCPICMG 153

Query: 91  PLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTSLE 143
           PLVEETST+CGHIFCKACIRAAI VQSKCPTCRKRVTAKELIRVFLPGTSLE
Sbjct: 154 PLVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKRVTAKELIRVFLPGTSLE 205

[Close]

BLAST of Cla002709 vs. NCBI nr
Match: gi|922368721|ref|XP_013456525.1| (zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula])

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-36
Identity = 75/117 (64.10%), Postives = 93/117 (79.49%), Query Frame = 1


Query: 28  LLIVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNS----SMKVKPAPPKEPKF 87
           ++  AEE+I++SNNNR+KRRR+       N DL INL+AS+S    S+K  P PPKEP F
Sbjct: 131 VMFFAEEQIRLSNNNRNKRRRESPKRSIFNCDLYINLDASSSNTMESVKKPPEPPKEPVF 190

Query: 88  NCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
            CPICMGP+VEE STRCGHIFCK+CI+AAI+ Q+KCPTCRK++T KELIRVFLP T+
Sbjct: 191 TCPICMGPMVEEMSTRCGHIFCKSCIKAAISAQAKCPTCRKKITVKELIRVFLPTTA 247

[Close]

BLAST of Cla002709 vs. NCBI nr
Match: gi|802716618|ref|XP_012085067.1| (PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X1 [Jatropha curcas])

HSP 1 Score: 160.2 bits (404), Expect = 2.6e-36
Identity = 76/117 (64.96%), Postives = 89/117 (76.07%), Query Frame = 1


Query: 30  IVAEERIKVSNNNRSKRRRDVSNHQPVNSDLLINLEASNSSMKVK------PAPPKEPKF 89
           ++A    +++ NN +KRRR  SNH  +N +  +NLE+S SSM+        P PPKEP F
Sbjct: 110 VIAGRTTRLTYNNPNKRRRSPSNHAVINCEHYVNLESSGSSMRDNAQQLQPPPPPKEPTF 169

Query: 90  NCPICMGPLVEETSTRCGHIFCKACIRAAIAVQSKCPTCRKRVTAKELIRVFLPGTS 141
           NCPICMGP VEETST+CGHIFCKACIRAAI VQSKCPTCRK+VT KELIRVFLP TS
Sbjct: 170 NCPICMGPFVEETSTKCGHIFCKACIRAAIGVQSKCPTCRKKVTVKELIRVFLPATS 226

The following BLAST results are available for this feature:

BLAST of Cla002709 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RN151_MOUSE	7.9e-09	45.76	RING finger protein 151 OS=Mus musculus GN=Rnf151 PE=1 SV=1	[more]
RNF4_MOUSE	5.1e-08	27.03	E3 ubiquitin-protein ligase RNF4 OS=Mus musculus GN=Rnf4 PE=1 SV=1	[more]
RNF4_RAT	6.7e-08	28.48	E3 ubiquitin-protein ligase RNF4 OS=Rattus norvegicus GN=Rnf4 PE=1 SV=1	[more]
RNF4_HUMAN	3.7e-06	28.07	E3 ubiquitin-protein ligase RNF4 OS=Homo sapiens GN=RNF4 PE=1 SV=1	[more]
RO52_HUMAN	8.2e-06	47.92	E3 ubiquitin-protein ligase TRIM21 OS=Homo sapiens GN=TRIM21 PE=1 SV=1	[more]

BLAST of Cla002709 vs. TrEMBL


Match Name	E-value	Identity	Description
B7FGG8_MEDTR	1.8e-36	64.10	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g074240 PE=2 SV=1	[more]
A0A067K272_JATCU	1.8e-36	64.96	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17518 PE=4 SV=1	[more]
B7FMT2_MEDTR	9.0e-36	66.07	Uncharacterized protein OS=Medicago truncatula GN=MTR_4g074240 PE=2 SV=1	[more]
A0A151TMW3_CAJCA	1.4e-33	65.14	52 kDa Ro protein OS=Cajanus cajan GN=KK1_021992 PE=4 SV=1	[more]
B9T3C7_RICCO	4.2e-33	68.93	RING finger protein, putative OS=Ricinus communis GN=RCOM_1750200 PE=4 SV=1	[more]

BLAST of Cla002709 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449453284\|ref\|XP_004144388.1\|	2.0e-52	93.69	PREDICTED: E3 ubiquitin-protein ligase RNF4 [Cucumis sativus]	[more]
gi\|659120828\|ref\|XP_008460369.1\|	4.4e-52	92.79	PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X1 [Cucumis melo]	[more]
gi\|659120837\|ref\|XP_008460373.1\|	3.8e-51	91.07	PREDICTED: E3 ubiquitin-protein ligase RNF4-like isoform X2 [Cucumis melo]	[more]
gi\|922368721\|ref\|XP_013456525.1\|	2.6e-36	64.10	zinc finger, C3HC4 type (RING finger) protein [Medicago truncatula]	[more]
gi\|802716618\|ref\|XP_012085067.1\|	2.6e-36	64.96	PREDICTED: E3 ubiquitin-protein ligase RNF4 isoform X1 [Jatropha curcas]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD
IPR017907	Znf_RING_CS

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0008270	zinc ion binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Cla002709	Cla002709	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Cla002709	Cla002709.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Cla002709.1.cds2	Cla002709.1.cds2	CDS
Cla002709.1.cds1	Cla002709.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (97103)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 84..123 score: 8.0
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 85..122 score: 6.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 85..123 score: 12
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 67..133 score: 1.9
IPR017907	Zinc finger, RING-type, conserved site	PROSITE	PS00518	ZF_RING_1	coord: 100..109 scor
None	No IPR available	PANTHER	PTHR23041	RING FINGER DOMAIN-CONTAINING	coord: 30..137 score: 2.6
None	No IPR available	PANTHER	PTHR23041:SF63	C3HC4 ZINC FINGER DOMAIN-CONTAINING PROTEIN-RELATED	coord: 30..137 score: 2.6
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 84..129 score: 3.76