ClCG07G004900 (gene) Watermelon (Charleston Gray)

Overview
NameClCG07G004900
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionLOB domain-containing protein
LocationCG_Chr07 : 6349689 .. 6351234 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAGGTTAGTCTCATGCGAAACTATATATGTATATATTGTATTATAATTTTCATTCATCCTCTCTTTTTTTTTTCTTTTGTCTTTCTTTCTTTTTCTGGATGTTTCGTGGAATCCTCGTACACCACCGATAGAGATGATCCCAAATCCTGATATCACCATTACAAACTAATTGAGCTTTACTTTTCTTTCTATTTCCTTCTTCTTTCTTGGATCTCTCTCTTTTACTATCTTTCTTTTCCTCTTGTCCTTCTTTCTGGGTAAGTTTGACATCAAGTGAAGATCAGAGCATGCTTGAATGTCCAAAGAAAGGTAAGAAAAAAGATCATCTTTTTTGTCTTTGTTTACAGAGATTAGTAACTCATGTGTTAACTATATTCAAAGTTGGTAGGGGTTAGCTATGCTCAGTTTTCATTTGTTTGAAGGTTTGTAGAAAAAATGACTAAAATGAGTTTACTGTTCAATGTAATGATTATTGAGTAATTTGTTTTCCTTCTCGTGACGGTTTTGTGTAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCAAATATTCATCCCCAGCAAATTATGGGGAGAAGAACCTCATTGCAAGCTCCTCCTGGGACACTTAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTCTCCCCATACTTCTCCCCTCATGAGCCTCATAAATTTGCCTCTGTCCACAAGGTTTTCGGCGCTAGCAACGTCTCCAAGATGCTCATGGTACGTAACACGTCTAAAATTGGTTATATTACAAGTTTGGTCCTTTCCACTTTTAGAGTACGTTAATGTTTGTTTGTTTGGTGTCCCCATAAATTTGAATTTTTGTAATGGTACTTAGTTTAGAAAGTTTTTAATAAGTTAAATTATAAACTATGTCGTCCTTGTAGGTTAGAGAGTTCAAATTTAGTCTAAAGATTTGAAAGTCGTAAACTATTTATGAAGGTCTTATCTAACCATATGGGTTAAGCTCTTTTGAGACTAAATTCAAATGTTAGAATGGAATATAAGGCGATGAAAGATTTTTGCAGGAAGTTTCGGAGAATCAGAGAGCGGATGCTGCAAATAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGCTGTATGGGCGCCATTTCAGCCCTACAACACCAAATTCAAGCCTTACAAGCTGAGCTCAATGCAGTGAGAGCTGAGATTTTAAGACACAAATTTAGAGAAGCTAATAATATGATTCACTCTTCTCCTCAACAACAACATTTGCCTTTTCTTTCTTCTTCTACGGAGGTCGTTTCGGTCGCCGTGCCACCACCACCTCCGCCACCACCGCTACCTCCACCGCCTCATCATGATGCTTCTTCTTCTACTTCCTCCTTGTACAACCGACCGGTGGTGGCCGTGGCGGCTGATTATAGTACTATTTCAAGTGATGAAAATGTTCCCTACTTTGTTACTACTTCTAGTACTGCTCATCAATTGAATTCTTAG

mRNA sequence

ATGTTTAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCAAATATTCATCCCCAGCAAATTATGGGGAGAAGAACCTCATTGCAAGCTCCTCCTGGGACACTTAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTCTCCCCATACTTCTCCCCTCATGAGCCTCATAAATTTGCCTCTGTCCACAAGGTTTTCGGCGCTAGCAACGTCTCCAAGATGCTCATGGAAGTTTCGGAGAATCAGAGAGCGGATGCTGCAAATAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGCTGTATGGGCGCCATTTCAGCCCTACAACACCAAATTCAAGCCTTACAAGCTGAGCTCAATGCAGTGAGAGCTGAGATTTTAAGACACAAATTTAGAGAAGCTAATAATATGATTCACTCTTCTCCTCAACAACAACATTTGCCTTTTCTTTCTTCTTCTACGGAGGTCGTTTCGGTCGCCGTGCCACCACCACCTCCGCCACCACCGCTACCTCCACCGCCTCATCATGATGCTTCTTCTTCTACTTCCTCCTTGTACAACCGACCGGTGGTGGCCGTGGCGGCTGATTATAGTACTATTTCAAGTGATGAAAATGTTCCCTACTTTGTTACTACTTCTAGTACTGCTCATCAATTGAATTCTTAG

Coding sequence (CDS)

ATGTTTAGAGAGAGATTCGACGAGATAGCGAAGAAGATAAAGAGAGAGACAGATGTATCATCAAATATTCATCCCCAGCAAATTATGGGGAGAAGAACCTCATTGCAAGCTCCTCCTGGGACACTTAACACCATTACTCCATGTGCAGCCTGCAAGCTCTTAAGAAGAAGATGTGCTCAAGAATGCCCCTTCTCCCCATACTTCTCCCCTCATGAGCCTCATAAATTTGCCTCTGTCCACAAGGTTTTCGGCGCTAGCAACGTCTCCAAGATGCTCATGGAAGTTTCGGAGAATCAGAGAGCGGATGCTGCAAATAGCTTAGTTTATGAAGCTAATGTGAGGTTAAGAGATCCTGTTTATGGCTGTATGGGCGCCATTTCAGCCCTACAACACCAAATTCAAGCCTTACAAGCTGAGCTCAATGCAGTGAGAGCTGAGATTTTAAGACACAAATTTAGAGAAGCTAATAATATGATTCACTCTTCTCCTCAACAACAACATTTGCCTTTTCTTTCTTCTTCTACGGAGGTCGTTTCGGTCGCCGTGCCACCACCACCTCCGCCACCACCGCTACCTCCACCGCCTCATCATGATGCTTCTTCTTCTACTTCCTCCTTGTACAACCGACCGGTGGTGGCCGTGGCGGCTGATTATAGTACTATTTCAAGTGATGAAAATGTTCCCTACTTTGTTACTACTTCTAGTACTGCTCATCAATTGAATTCTTAG

Protein sequence

MFRERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFLSSSTEVVSVAVPPPPPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDENVPYFVTTSSTAHQLNS
Homology
[Close]
BLAST of ClCG07G004900 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 269.6 bits (688), Expect = 3.3e-71
Identity = 145/224 (64.73%), Postives = 160/224 (71.43%), Query Frame = 1 

Query: 3   RERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQEC 62
           RERF+EI KKIKRE D      P Q+ G R  +  PPGTLNTITPCAACKLLRRRCAQEC
Sbjct: 5   RERFEEIGKKIKREADA----WPHQMAGIRRPMSGPPGTLNTITPCAACKLLRRRCAQEC 64

Query: 63  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGC 122
           PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEV E+QRADAANSLVYEANVRLRDPVYGC
Sbjct: 65  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGC 124

Query: 123 MGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFLSSSTEVVSVAV 182
           MGAISALQ Q+QALQAEL AVR+EIL++K REA   +      Q   F +S    VSV  
Sbjct: 125 MGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQVAGFHNSGG--VSVIA 184

Query: 183 PPPPPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDEN 227
           PPP  P   P P      S +S ++++P      +Y  I S+ N
Sbjct: 185 PPPQRPTTPPQPTTAHPPSPSSCVFSQPTTR-DLEYGNIESENN 221

[Close]
BLAST of ClCG07G004900 vs. Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 251.1 bits (640), Expect = 1.2e-65
Identity = 145/269 (53.90%), Postives = 169/269 (62.83%), Query Frame = 1 

Query: 1   MFRER-----FDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPG-TLNTITPCAACKLL 60
           M RER     + E  KKIK++    +      +MG R  +  PPG TLNT+TPCAACKLL
Sbjct: 1   MSREREGFGEYYETVKKIKKDPAFETTTD-HAVMGIRRHVAVPPGTTLNTVTPCAACKLL 60

Query: 61  RRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVR 120
           RRRCA+ECPFSPYFSPHEPHKFA+VHKVFGASNVSKML+EV E+QR DAANSLVYEAN+R
Sbjct: 61  RRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLR 120

Query: 121 LRDPVYGCMGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFLSSS 180
           LRDP+YGCMGAISALQH IQ+LQ+EL  VR EILRHK++EA   I S     +    +SS
Sbjct: 121 LRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATT-ITSLQNNFNSTTTTSS 180

Query: 181 TE------VVSVAVPPPPPPPPLPPPPH-----------------------HDASSSTSS 231
                     ++ +PPPPPPPP P PP                          +SSS SS
Sbjct: 181 VSCDQHALASAILLPPPPPPPPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSS 240

[Close]
BLAST of ClCG07G004900 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 156.0 bits (393), Expect = 5.3e-37
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 1 

Query: 46  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAAN 105
           +PCAACKLLRRRCAQ+C FSPYF   EP KFA+VH+VFGASNV+KML E+  +QR DA +
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 106 SLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEILRHKFREANN 158
           S+VYEAN R+RDPVYGC+GAIS+LQ QI  LQA+L   +AE++  + R++ N
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTN 123

[Close]
BLAST of ClCG07G004900 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 154.8 bits (390), Expect = 1.2e-36
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 1 

Query: 46  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAAN 105
           +PCA+CKLLRRRCA++C F+PYF P +PHKFA VHKVFGASNVSKML E+  +QRADA N
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 106 SLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEIL 149
           SLV+EAN R+RDPVYGC+GAIS LQ+Q+  LQ +L   +AEIL
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 109

[Close]
BLAST of ClCG07G004900 vs. Swiss-Prot
Match: LBD1_ARATH (LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 4.2e-34
Identity = 70/139 (50.36%), Postives = 95/139 (68.35%), Query Frame = 1 

Query: 33  TSLQAPPGTLN---TITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVS 92
           +S  +PP +L+    ++PCAACK+LRRRCA+ C  +PYF P +P KF   H+VFGASN+ 
Sbjct: 16  SSSSSPPPSLSPRVVLSPCAACKILRRRCAERCVLAPYFPPTDPAKFTIAHRVFGASNII 75

Query: 93  KMLMEVSENQRADAANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEILR 152
           K L E+ E+QR DA NS+VYEA  R+RDPVYGC GAI  LQ Q+  LQA+L   + E++ 
Sbjct: 76  KFLQELPESQRTDAVNSMVYEAEARIRDPVYGCAGAIYHLQRQVSELQAQLAKAQVEMVN 135

Query: 153 HKFREAN--NMIHSSPQQQ 167
            +F+ +N   +I++  QQQ
Sbjct: 136 MQFQRSNLLELIYNMDQQQ 154

[Close]
BLAST of ClCG07G004900 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 269.6 bits (688), Expect = 1.8e-72
Identity = 145/224 (64.73%), Postives = 160/224 (71.43%), Query Frame = 1 

Query: 3   RERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQEC 62
           RERF+EI KKIKRE D      P Q+ G R  +  PPGTLNTITPCAACKLLRRRCAQEC
Sbjct: 5   RERFEEIGKKIKREADA----WPHQMAGIRRPMSGPPGTLNTITPCAACKLLRRRCAQEC 64

Query: 63  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGC 122
           PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEV E+QRADAANSLVYEANVRLRDPVYGC
Sbjct: 65  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGC 124

Query: 123 MGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFLSSSTEVVSVAV 182
           MGAISALQ Q+QALQAEL AVR+EIL++K REA   +      Q   F +S    VSV  
Sbjct: 125 MGAISALQQQVQALQAELTAVRSEILKYKQREAVATLIVPSNSQVAGFHNSGG--VSVIA 184

Query: 183 PPPPPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDEN 227
           PPP  P   P P      S +S ++++P      +Y  I S+ N
Sbjct: 185 PPPQRPTTPPQPTTAHPPSPSSCVFSQPTTR-DLEYGNIESENN 221

[Close]
BLAST of ClCG07G004900 vs. TAIR10
Match: AT2G30340.1 (AT2G30340.1 LOB domain-containing protein 13)

HSP 1 Score: 251.1 bits (640), Expect = 6.8e-67
Identity = 145/269 (53.90%), Postives = 169/269 (62.83%), Query Frame = 1 

Query: 1   MFRER-----FDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPG-TLNTITPCAACKLL 60
           M RER     + E  KKIK++    +      +MG R  +  PPG TLNT+TPCAACKLL
Sbjct: 1   MSREREGFGEYYETVKKIKKDPAFETTTD-HAVMGIRRHVAVPPGTTLNTVTPCAACKLL 60

Query: 61  RRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVR 120
           RRRCA+ECPFSPYFSPHEPHKFA+VHKVFGASNVSKML+EV E+QR DAANSLVYEAN+R
Sbjct: 61  RRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLR 120

Query: 121 LRDPVYGCMGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFLSSS 180
           LRDP+YGCMGAISALQH IQ+LQ+EL  VR EILRHK++EA   I S     +    +SS
Sbjct: 121 LRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHKYQEATT-ITSLQNNFNSTTTTSS 180

Query: 181 TE------VVSVAVPPPPPPPPLPPPPH-----------------------HDASSSTSS 231
                     ++ +PPPPPPPP P PP                          +SSS SS
Sbjct: 181 VSCDQHALASAILLPPPPPPPPTPRPPRLLSSQPAPPPTPPVSLPSPSMVVSSSSSSNSS 240

[Close]
BLAST of ClCG07G004900 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 156.0 bits (393), Expect = 3.0e-38
Identity = 72/112 (64.29%), Postives = 89/112 (79.46%), Query Frame = 1 

Query: 46  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAAN 105
           +PCAACKLLRRRCAQ+C FSPYF   EP KFA+VH+VFGASNV+KML E+  +QR DA +
Sbjct: 12  SPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQRGDAVS 71

Query: 106 SLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEILRHKFREANN 158
           S+VYEAN R+RDPVYGC+GAIS+LQ QI  LQA+L   +AE++  + R++ N
Sbjct: 72  SMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTN 123

[Close]
BLAST of ClCG07G004900 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 154.8 bits (390), Expect = 6.6e-38
Identity = 72/103 (69.90%), Postives = 85/103 (82.52%), Query Frame = 1 

Query: 46  TPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAAN 105
           +PCA+CKLLRRRCA++C F+PYF P +PHKFA VHKVFGASNVSKML E+  +QRADA N
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 106 SLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEIL 149
           SLV+EAN R+RDPVYGC+GAIS LQ+Q+  LQ +L   +AEIL
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 109

[Close]
BLAST of ClCG07G004900 vs. TAIR10
Match: AT1G65620.1 (AT1G65620.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 147.5 bits (371), Expect = 1.1e-35
Identity = 69/140 (49.29%), Postives = 100/140 (71.43%), Query Frame = 1 

Query: 43  NTITPCAACKLLRRRCAQECPFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRAD 102
           +T +PCAACK LRR+C  EC F+PYF P +P KFA+VHKVFGASNV+K+L E+  +QR D
Sbjct: 5   STNSPCAACKFLRRKCQPECVFAPYFPPDQPQKFANVHKVFGASNVTKLLNELHPSQRED 64

Query: 103 AANSLVYEANVRLRDPVYGCMGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSS 162
           A NSL YEA++RLRDPVYGC+G IS LQHQ++ LQ +L+  ++E+ ++   ++  ++ ++
Sbjct: 65  AVNSLAYEADMRLRDPVYGCVGVISLLQHQLRQLQIDLSCAKSELSKY---QSLGILAAT 124

Query: 163 PQQQHLPFLSSSTEVVSVAV 183
            Q   +  L+ + +  + AV
Sbjct: 125 HQSLGINLLAGAADGTATAV 141

[Close]
BLAST of ClCG07G004900 vs. NCBI nr
Match: gi|449457480|ref|XP_004146476.1| (PREDICTED: LOB domain-containing protein 15 [Cucumis sativus])

HSP 1 Score: 442.2 bits (1136), Expect = 5.9e-121
Identity = 221/241 (91.70%), Postives = 228/241 (94.61%), Query Frame = 1 

Query: 3   RERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQEC 62
           RERFDEIAKKIKRETDVSSNI PQQIMGRR SLQ PPG LNTITPCAACKLLRRRCAQEC
Sbjct: 5   RERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGPPGALNTITPCAACKLLRRRCAQEC 64

Query: 63  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGC 122
           PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVS+NQRADAANSLVYEANVRLRDPVYGC
Sbjct: 65  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSDNQRADAANSLVYEANVRLRDPVYGC 124

Query: 123 MGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFL-SSSTEVVSVA 182
           MGAISALQHQIQ+LQAELNAVRAEILRHKFREANN+IHSSPQQQH+PFL SSST VVSVA
Sbjct: 125 MGAISALQHQIQSLQAELNAVRAEILRHKFREANNIIHSSPQQQHVPFLSSSSTVVVSVA 184

Query: 183 VPPPPPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDENVPYFVTTSSTAHQLN 242
           +PPPPPPPPLPPP HHDASSS+SSLYNR  VA AADYSTISS+ENV YFV TSST HQLN
Sbjct: 185 LPPPPPPPPLPPPHHHDASSSSSSLYNRRTVAAAADYSTISSNENVTYFVGTSSTGHQLN 244

[Close]
BLAST of ClCG07G004900 vs. NCBI nr
Match: gi|659114146|ref|XP_008456927.1| (PREDICTED: LOB domain-containing protein 15 [Cucumis melo])

HSP 1 Score: 438.7 bits (1127), Expect = 6.5e-120
Identity = 222/242 (91.74%), Postives = 228/242 (94.21%), Query Frame = 1 

Query: 3   RERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQEC 62
           RERFDEIAKKIKRETDVSSNI PQQIMGRR SLQ  PG LNTITPCAACKLLRRRCAQEC
Sbjct: 5   RERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGSPGALNTITPCAACKLLRRRCAQEC 64

Query: 63  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGC 122
           PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGC
Sbjct: 65  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGC 124

Query: 123 MGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFL--SSSTEVVSV 182
           MGAISALQHQIQ+LQAELNAVRAEILRHKFREANNMIHSSPQQQH+PFL  SSSTEVVSV
Sbjct: 125 MGAISALQHQIQSLQAELNAVRAEILRHKFREANNMIHSSPQQQHVPFLSSSSSTEVVSV 184

Query: 183 AVPPPPPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDENVPYFVTTSSTAHQL 242
           A+  PPPPPPLPPP HHDASSS+SSLYNRP VA AADYSTISSDENV YFV+TSS+ HQL
Sbjct: 185 AL--PPPPPPLPPPHHHDASSSSSSLYNRPTVAAAADYSTISSDENVTYFVSTSSSGHQL 244

[Close]
BLAST of ClCG07G004900 vs. NCBI nr
Match: gi|802778595|ref|XP_012091188.1| (PREDICTED: LOB domain-containing protein 15 [Jatropha curcas])

HSP 1 Score: 302.8 bits (774), Expect = 5.6e-79
Identity = 169/237 (71.31%), Postives = 185/237 (78.06%), Query Frame = 1 

Query: 3   RERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQEC 62
           RERFDEI KKIKRETD SS       MGRR  L  PPGTLNTITPCAACKLLRRRCAQEC
Sbjct: 5   RERFDEIGKKIKRETDASSQ------MGRRHML-GPPGTLNTITPCAACKLLRRRCAQEC 64

Query: 63  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGC 122
           PFSPYFSPHEP KFASVHKVFGASNVSKMLMEV E+QRADAANSLVYEANVRLRDPVYGC
Sbjct: 65  PFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGC 124

Query: 123 MGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFLSSSTEVVSVAV 182
           MGAISALQ Q+Q+LQAELNA+RAEIL++K+REA N+I SS   QH+  LSS    VSV  
Sbjct: 125 MGAISALQQQVQSLQAELNAIRAEILKYKYREA-NIIPSS--HQHIALLSSG--AVSVVT 184

Query: 183 ---------PPPPPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDENVPYF 231
                    PP PPPPP PPPP    SSS+SS+Y     + AADY+TI S+E+V +F
Sbjct: 185 QSPSLTPQQPPQPPPPPPPPPPLPPTSSSSSSIYTHQPTS-AADYTTI-SNEHVSFF 227

[Close]
BLAST of ClCG07G004900 vs. NCBI nr
Match: gi|590570016|ref|XP_007011230.1| (LOB domain-containing protein 15 [Theobroma cacao])

HSP 1 Score: 302.8 bits (774), Expect = 5.6e-79
Identity = 173/236 (73.31%), Postives = 186/236 (78.81%), Query Frame = 1 

Query: 3   RERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQEC 62
           RERFDEI KKIKRE DVSS+      MGRR  L  PPGTLNTITPCAACKLLRRRCAQEC
Sbjct: 5   RERFDEIGKKIKREADVSSHH-----MGRRHML-GPPGTLNTITPCAACKLLRRRCAQEC 64

Query: 63  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGC 122
           PFSPYFSPHEP KFASVHKVFGASNVSKMLMEV E+QRADAANSLVYEANVRLRDPVYGC
Sbjct: 65  PFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGC 124

Query: 123 MGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFLSSSTEVVSVAV 182
           MGAISALQ Q+Q+LQAELNAVRAEIL++K REA N+I SS    H+  LSS    VSVA 
Sbjct: 125 MGAISALQQQVQSLQAELNAVRAEILKYKCREA-NLIPSS----HVALLSSG--AVSVAA 184

Query: 183 --------PPPPPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDENVPYF 231
                   PPPPPPPPLPP      +SS+SS+Y +P    AADYSTI S+ENV YF
Sbjct: 185 LPSAPTHPPPPPPPPPLPP------TSSSSSMYTQP--TTAADYSTI-SNENVSYF 218

[Close]
BLAST of ClCG07G004900 vs. NCBI nr
Match: gi|823230662|ref|XP_012448054.1| (PREDICTED: LOB domain-containing protein 15 [Gossypium raimondii])

HSP 1 Score: 301.6 bits (771), Expect = 1.2e-78
Identity = 164/232 (70.69%), Postives = 181/232 (78.02%), Query Frame = 1 

Query: 3   RERFDEIAKKIKRETDVSSNIHPQQIMGRRTSLQAPPGTLNTITPCAACKLLRRRCAQEC 62
           RERFDEI KKIKRE DVS+N      MGRR  L  PPGTLNTITPCAACKLLRRRCAQEC
Sbjct: 5   RERFDEIGKKIKREADVSANYQ----MGRRHML-GPPGTLNTITPCAACKLLRRRCAQEC 64

Query: 63  PFSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGC 122
           PFSPYFSPHEP KFASVHKVFGASNVSKMLMEV E+QRADAANSLVYEANVRLRDPVYGC
Sbjct: 65  PFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGC 124

Query: 123 MGAISALQHQIQALQAELNAVRAEILRHKFREANNMIHSSPQQQHLPFLSSSTEVVSVAV 182
           MGAISALQ Q+Q+LQAELNAVRAEI+++K REAN +    P   H+  LSS    VSVA 
Sbjct: 125 MGAISALQQQVQSLQAELNAVRAEIIKYKCREANLV----PPSSHVAMLSSG--AVSVAA 184

Query: 183 PPP----PPPPPLPPPPHHDASSSTSSLYNRPVVAVAADYSTISSDENVPYF 231
           PPP    PPPPP PPP     + +T S+Y +P    + DY+T+S+D NV YF
Sbjct: 185 PPPATTQPPPPPPPPPLPTTTAVTTCSIYTQP--NTSTDYTTLSND-NVSYF 222

The following BLAST results are available for this feature:
BLAST of ClCG07G004900 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD15_ARATH3.3e-7164.73LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2[more]
LBD13_ARATH1.2e-6553.90LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2[more]
LBD4_ARATH5.3e-3764.29LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
LBD12_ARATH1.2e-3669.90LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2[more]
LBD1_ARATH4.2e-3450.36LOB domain-containing protein 1 OS=Arabidopsis thaliana GN=LBD1 PE=2 SV=1[more]
BLAST of ClCG07G004900 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40470.11.8e-7264.73 LOB domain-containing protein 15[more]
AT2G30340.16.8e-6753.90 LOB domain-containing protein 13[more]
AT1G31320.13.0e-3864.29 LOB domain-containing protein 4[more]
AT2G30130.16.6e-3869.90 Lateral organ boundaries (LOB) domain family protein[more]
AT1G65620.11.1e-3549.29 Lateral organ boundaries (LOB) domain family protein[more]
BLAST of ClCG07G004900 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457480|ref|XP_004146476.1|5.9e-12191.70PREDICTED: LOB domain-containing protein 15 [Cucumis sativus][more]
gi|659114146|ref|XP_008456927.1|6.5e-12091.74PREDICTED: LOB domain-containing protein 15 [Cucumis melo][more]
gi|802778595|ref|XP_012091188.1|5.6e-7971.31PREDICTED: LOB domain-containing protein 15 [Jatropha curcas][more]
gi|590570016|ref|XP_007011230.1|5.6e-7973.31LOB domain-containing protein 15 [Theobroma cacao][more]
gi|823230662|ref|XP_012448054.1|1.2e-7870.69PREDICTED: LOB domain-containing protein 15 [Gossypium raimondii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005951 carbamoyl-phosphate synthase complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
cellular_component GO:0016020 membrane
molecular_function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG07G004900.1ClCG07G004900.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 47..144
score: 1.3
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 46..147
score: 25
NoneNo IPR availableunknownCoilCoilcoord: 126..153
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 20..231
score: 1.6E
NoneNo IPR availablePANTHERPTHR31301:SF2LOB DOMAIN-CONTAINING PROTEIN 15coord: 20..231
score: 1.6E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
ClCG07G004900Csa6G013950Cucumber (Chinese Long) v2cuwcgB490
ClCG07G004900Csa5G219380Cucumber (Chinese Long) v2cuwcgB402
ClCG07G004900MELO3C020121Melon (DHL92) v3.5.1mewcgB069
ClCG07G004900Cla007276Watermelon (97103) v1wcgwmB365
ClCG07G004900Cla97C11G212720Watermelon (97103) v2wcgwmbB294
ClCG07G004900Cla97C07G133310Watermelon (97103) v2wcgwmbB307
ClCG07G004900Bhi07G000432Wax gourdwcgwgoB596
ClCG07G004900CSPI05G11410Wild cucumber (PI 183967)cpiwcgB420
ClCG07G004900CSPI06G02030Wild cucumber (PI 183967)cpiwcgB516
ClCG07G004900Cucsa.144080Cucumber (Gy14) v1cgywcgB244
ClCG07G004900CmaCh04G010740Cucurbita maxima (Rimu)cmawcgB673
ClCG07G004900CmaCh04G001130Cucurbita maxima (Rimu)cmawcgB674
ClCG07G004900CmoCh04G001100Cucurbita moschata (Rifu)cmowcgB676
ClCG07G004900CmoCh04G011400Cucurbita moschata (Rifu)cmowcgB675
ClCG07G004900CmoCh15G001700Cucurbita moschata (Rifu)cmowcgB262
ClCG07G004900Lsi03G002750Bottle gourd (USVL1VR-Ls)lsiwcgB250
ClCG07G004900Lsi04G010330Bottle gourd (USVL1VR-Ls)lsiwcgB297
ClCG07G004900Cp4.1LG01g11560Cucurbita pepo (Zucchini)cpewcgB409
ClCG07G004900Cp4.1LG01g05690Cucurbita pepo (Zucchini)cpewcgB410
ClCG07G004900Cp4.1LG13g07450Cucurbita pepo (Zucchini)cpewcgB179
ClCG07G004900CsGy6G002110Cucumber (Gy14) v2cgybwcgB451
ClCG07G004900CsGy5G008660Cucumber (Gy14) v2cgybwcgB369
ClCG07G004900MELO3C020121.2Melon (DHL92) v3.6.1medwcgB065
ClCG07G004900Carg02149Silver-seed gourdcarwcgB0260
ClCG07G004900Carg00177Silver-seed gourdcarwcgB0651
ClCG07G004900Carg24482Silver-seed gourdcarwcgB0887
ClCG07G004900CsaV3_6G002180Cucumber (Chinese Long) v3cucwcgB510
ClCG07G004900CsaV3_5G010810Cucumber (Chinese Long) v3cucwcgB422
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
ClCG07G004900ClCG11G005800Watermelon (Charleston Gray)wcgwcgB076
The following block(s) are covering this gene:

None