CmoCh04G001100 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh04G001100
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionLOB domain-containing protein, putative
LocationCmo_Chr04 : 579883 .. 580558 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTCAAATTAGTTGTCACAGATGGAGAAAGATCGGAGGTGTTAGGGAAGAAGAGAAAGCGAGCGGTATCATCAAATATTCCTCCACGACACACGCTGCACGGTCCTCCTAGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCCTAAGAAGAAGATGTGGTCAACAATGTCCCTTCGCCCCATACTTCTCCCCCCACGAGCCTCACAAGTTCGCCTCGGTCCACAAGGTCTTCGGCGCCAGCAATGTCTCCAAGATGCTCAAGGTAACGGTAACGATAAGAATTTATTGATATAAAATTGAAAATTTAAAGACCGTGATAGAATATTTTTTTACAGGAAGTTCCGAAAAATGAAAGAGATAATACTACGAATAGTCTAATTTACGAAGCTAACGTGAGGCTGAGAGATCCTGTGTATGGTTGCATGGGCGCCATTTCATGTCTACAACACCAAGTCCAAGCGTTACAAGCTACACTCACTGCAGTTAGAGCTGAGATACTGAGATGCAAATATAGACAAGGTAATATGGTTTCCATTGCCGTACAGCCACCGCCACCGCCGCCTCCCGAGCTACCTCCGCCGCCTCATCAGGATGCTTCTTCCTCTTCCTCCACCTTGTACAACCGGCCCACGGTGGCTGCTGATTCATCCTTTTTCGCATTTTAG

mRNA sequence

ATGTTCAAATTAGTTGTCACAGATGGAGAAAGATCGGAGGTGTTAGGGAAGAAGAGAAAGCGAGCGGTATCATCAAATATTCCTCCACGACACACGCTGCACGGTCCTCCTAGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCCTAAGAAGAAGATGTGGTCAACAATGTCCCTTCGCCCCATACTTCTCCCCCCACGAGCCTCACAAGTTCGCCTCGGTCCACAAGGTCTTCGGCGCCAGCAATGTCTCCAAGATGCTCAAGGAAGTTCCGAAAAATGAAAGAGATAATACTACGAATAGTCTAATTTACGAAGCTAACGTGAGGCTGAGAGATCCTGTGTATGGTTGCATGGGCGCCATTTCATGTCTACAACACCAAGTCCAAGCGTTACAAGCTACACTCACTGCAGTTAGAGCTGAGATACTGAGATGCAAATATAGACAAGGTAATATGGTTTCCATTGCCGTACAGCCACCGCCACCGCCGCCTCCCGAGCTACCTCCGCCGCCTCATCAGGATGCTTCTTCCTCTTCCTCCACCTTGTACAACCGGCCCACGGTGGCTGCTGATTCATCCTTTTTCGCATTTTAG

Coding sequence (CDS)

ATGTTCAAATTAGTTGTCACAGATGGAGAAAGATCGGAGGTGTTAGGGAAGAAGAGAAAGCGAGCGGTATCATCAAATATTCCTCCACGACACACGCTGCACGGTCCTCCTAGGACTCTCAACACCATTACTCCATGTGCAGCCTGCAAGCTCCTAAGAAGAAGATGTGGTCAACAATGTCCCTTCGCCCCATACTTCTCCCCCCACGAGCCTCACAAGTTCGCCTCGGTCCACAAGGTCTTCGGCGCCAGCAATGTCTCCAAGATGCTCAAGGAAGTTCCGAAAAATGAAAGAGATAATACTACGAATAGTCTAATTTACGAAGCTAACGTGAGGCTGAGAGATCCTGTGTATGGTTGCATGGGCGCCATTTCATGTCTACAACACCAAGTCCAAGCGTTACAAGCTACACTCACTGCAGTTAGAGCTGAGATACTGAGATGCAAATATAGACAAGGTAATATGGTTTCCATTGCCGTACAGCCACCGCCACCGCCGCCTCCCGAGCTACCTCCGCCGCCTCATCAGGATGCTTCTTCCTCTTCCTCCACCTTGTACAACCGGCCCACGGTGGCTGCTGATTCATCCTTTTTCGCATTTTAG
Homology
[Close]
BLAST of CmoCh04G001100 vs. Swiss-Prot
Match: LBD15_ARATH (LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2)

HSP 1 Score: 211.8 bits (538), Expect = 6.7e-54
Identity = 120/204 (58.82%), Postives = 140/204 (68.63%), Query Frame = 1 

Query: 10  ERSEVLGKKRKRAVSS----NIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPY 69
           ER E +GKK KR   +        R  + GPP TLNTITPCAACKLLRRRC Q+CPF+PY
Sbjct: 6   ERFEEIGKKIKREADAWPHQMAGIRRPMSGPPGTLNTITPCAACKLLRRRCAQECPFSPY 65

Query: 70  FSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAIS 129
           FSPHEPHKFASVHKVFGASNVSKML EVP+++R +  NSL+YEANVRLRDPVYGCMGAIS
Sbjct: 66  FSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAIS 125

Query: 130 CLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPP---------------PPPPEL 189
            LQ QVQALQA LTAVR+EIL  KY+Q   V+  + P                  PPP+ 
Sbjct: 126 ALQQQVQALQAELTAVRSEIL--KYKQREAVATLIVPSNSQVAGFHNSGGVSVIAPPPQR 185

Query: 190 PPPPHQDAS----SSSSTLYNRPT 191
           P  P Q  +    S SS ++++PT
Sbjct: 186 PTTPPQPTTAHPPSPSSCVFSQPT 207

[Close]
BLAST of CmoCh04G001100 vs. Swiss-Prot
Match: LBD13_ARATH (LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2)

HSP 1 Score: 194.9 bits (494), Expect = 8.4e-49
Identity = 88/128 (68.75%), Postives = 107/128 (83.59%), Query Frame = 1 

Query: 30  RHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKM 89
           RH    P  TLNT+TPCAACKLLRRRC ++CPF+PYFSPHEPHKFA+VHKVFGASNVSKM
Sbjct: 37  RHVAVPPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKM 96

Query: 90  LKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCK 149
           L EV +++R +  NSL+YEAN+RLRDP+YGCMGAIS LQH +Q+LQ+ LT VR EILR K
Sbjct: 97  LLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHK 156

Query: 150 YRQGNMVS 158
           Y++   ++
Sbjct: 157 YQEATTIT 164

[Close]
BLAST of CmoCh04G001100 vs. Swiss-Prot
Match: LBD12_ARATH (LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2)

HSP 1 Score: 148.7 bits (374), Expect = 6.9e-35
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1 

Query: 44  TPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTN 103
           +PCA+CKLLRRRC + C FAPYF P +PHKFA VHKVFGASNVSKML+E+P ++R +  N
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 104 SLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEIL 147
           SL++EAN R+RDPVYGC+GAIS LQ+QV  LQ  L   +AEIL
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 109

[Close]
BLAST of CmoCh04G001100 vs. Swiss-Prot
Match: LOB_ARATH (Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 6.5e-33
Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 1 

Query: 44  TPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTN 103
           +PCAACK LRR+C   C FAPYF P EPHKFA+VHK+FGASNV+K+L E+  ++R++  N
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 104 SLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILR------CKYRQGNMVS 163
           SL YEA  R+RDPVYGC+GAIS LQ QV  LQ  L A  A++             GN+V 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPGNVVD 129

Query: 164 IAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSFFAF 201
           +  QP P P  +LPP       S +S + N+       S+  F
Sbjct: 130 LVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTF 172

[Close]
BLAST of CmoCh04G001100 vs. Swiss-Prot
Match: LBD4_ARATH (LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.9e-32
Identity = 72/159 (45.28%), Postives = 100/159 (62.89%), Query Frame = 1 

Query: 38  RTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNE 97
           R     +PCAACKLLRRRC Q C F+PYF   EP KFA+VH+VFGASNV+KML+E+P ++
Sbjct: 6   RKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQ 65

Query: 98  RDNTTNSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVS 157
           R +  +S++YEAN R+RDPVYGC+GAIS LQ Q+  LQA L   +AE++  + RQ     
Sbjct: 66  RGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFP 125

Query: 158 IAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSS 197
                P  P     P   Q +   +  +++   +  ++S
Sbjct: 126 GHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEAS 164

[Close]
BLAST of CmoCh04G001100 vs. TrEMBL
Match: A0A0A0KM94_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G219380 PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 2.8e-67
Identity = 143/217 (65.90%), Postives = 161/217 (74.19%), Query Frame = 1 

Query: 10  ERSEVLGKKRKRA--VSSNIPP------RHTLHGPPRTLNTITPCAACKLLRRRCGQQCP 69
           ER + + KK KR   VSSNIPP      RH+L GPP  LNTITPCAACKLLRRRC Q+CP
Sbjct: 6   ERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGPPGALNTITPCAACKLLRRRCAQECP 65

Query: 70  FAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCM 129
           F+PYFSPHEPHKFASVHKVFGASNVSKML EV  N+R +  NSL+YEANVRLRDPVYGCM
Sbjct: 66  FSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSDNQRADAANSLVYEANVRLRDPVYGCM 125

Query: 130 GAISCLQHQVQALQATLTAVRAEILRCKYRQGN---------------------MVSIAV 189
           GAIS LQHQ+Q+LQA L AVRAEILR K+R+ N                     +VS+A+
Sbjct: 126 GAISALQHQIQSLQAELNAVRAEILRHKFREANNIIHSSPQQQHVPFLSSSSTVVVSVAL 185

Query: 190 QPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSF 198
            PPPPPPP LPPP H DASSSSS+LYNR TVAA + +
Sbjct: 186 -PPPPPPPPLPPPHHHDASSSSSSLYNRRTVAAAADY 221

[Close]
BLAST of CmoCh04G001100 vs. TrEMBL
Match: A0A0B0NU48_GOSAR (LOB domain-containing 15-like protein OS=Gossypium arboreum GN=F383_01332 PE=4 SV=1)

HSP 1 Score: 237.3 bits (604), Expect = 1.6e-59
Identity = 125/200 (62.50%), Postives = 150/200 (75.00%), Query Frame = 1 

Query: 10  ERSEVLGKKRKR----AVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPY 69
           ER + LGK+ KR    +    +  RH L  PP TLNTITPCAACKLLRRRC Q+CPF+PY
Sbjct: 6   ERFDELGKQIKREGGVSCHQQMGRRHIL-SPPGTLNTITPCAACKLLRRRCAQECPFSPY 65

Query: 70  FSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAIS 129
           FSPHEP KFASVHKVFGASNVSKML EVP+++R +  NSL+YEANVRLRDPVYGCMGAIS
Sbjct: 66  FSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAIS 125

Query: 130 CLQHQVQALQATLTAVRAEILRCKYRQGNMV-----------SIAVQPPPPPPPELPPPP 189
            LQHQVQ+LQA + AVRAEIL+ KYR+ N +           +++V  PPPPPP+ PPPP
Sbjct: 126 ALQHQVQSLQAEVHAVRAEILKYKYREANFIPSSLVALLSSGAVSVAAPPPPPPQPPPPP 185

Query: 190 HQDASSSSSTLYNRPTVAAD 195
               S+S+S++Y + T AAD
Sbjct: 186 LPTTSTSTSSMYTQLTTAAD 204

[Close]
BLAST of CmoCh04G001100 vs. TrEMBL
Match: A0A067JNV9_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03351 PE=4 SV=1)

HSP 1 Score: 236.5 bits (602), Expect = 2.8e-59
Identity = 131/211 (62.09%), Postives = 154/211 (72.99%), Query Frame = 1 

Query: 10  ERSEVLGKKRKRAV--SSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFS 69
           ER + +GKK KR    SS +  RH L GPP TLNTITPCAACKLLRRRC Q+CPF+PYFS
Sbjct: 6   ERFDEIGKKIKRETDASSQMGRRHML-GPPGTLNTITPCAACKLLRRRCAQECPFSPYFS 65

Query: 70  PHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAISCL 129
           PHEP KFASVHKVFGASNVSKML EVP+++R +  NSL+YEANVRLRDPVYGCMGAIS L
Sbjct: 66  PHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISAL 125

Query: 130 QHQVQALQATLTAVRAEILRCKYRQGNMV-------------SIAV----------QPPP 189
           Q QVQ+LQA L A+RAEIL+ KYR+ N++             +++V          QPP 
Sbjct: 126 QQQVQSLQAELNAIRAEILKYKYREANIIPSSHQHIALLSSGAVSVVTQSPSLTPQQPPQ 185

Query: 190 PPPPELPPPPHQDASSSSSTLY-NRPTVAAD 195
           PPPP  PPPP    SSSSS++Y ++PT AAD
Sbjct: 186 PPPPPPPPPPLPPTSSSSSSIYTHQPTSAAD 215

[Close]
BLAST of CmoCh04G001100 vs. TrEMBL
Match: B9S4B8_RICCO (LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0689060 PE=4 SV=1)

HSP 1 Score: 235.7 bits (600), Expect = 4.8e-59
Identity = 131/208 (62.98%), Postives = 153/208 (73.56%), Query Frame = 1 

Query: 10  ERSEVLGKKRKRAV--SSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFS 69
           ER + +GKK KR +  SS +  RH L GPP TLNTITPCAACKLLRRRC Q+CPF+PYFS
Sbjct: 6   ERFDEIGKKIKREIDASSQMGRRHML-GPPGTLNTITPCAACKLLRRRCAQECPFSPYFS 65

Query: 70  PHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAISCL 129
           PHEP KFASVHKVFGASNVSKML EVP+++R +  NSL+YEANVRLRDPVYGCMGAIS L
Sbjct: 66  PHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISAL 125

Query: 130 QHQVQALQATLTAVRAEILRCKYRQGNM-------------VSIA-----VQPPPPPPPE 189
           Q Q+Q LQA L AVRAEIL+ KYR+ N+             VS+A     + PPPP PP 
Sbjct: 126 QQQIQTLQAELNAVRAEILKYKYREANILPSTHVALLSSGAVSVAATSQSLTPPPPTPPP 185

Query: 190 LPPPPHQDASSSSSTLY-NRPTVAADSS 197
            PPPP    +SSS++LY ++PT  AD S
Sbjct: 186 PPPPPPLPPTSSSTSLYTHQPTTVADYS 212

[Close]
BLAST of CmoCh04G001100 vs. TrEMBL
Match: A0A061FRT3_THECC (LOB domain-containing protein 15 OS=Theobroma cacao GN=TCM_045438 PE=4 SV=1)

HSP 1 Score: 233.4 bits (594), Expect = 2.4e-58
Identity = 131/207 (63.29%), Postives = 151/207 (72.95%), Query Frame = 1 

Query: 10  ERSEVLGKKRKRA--VSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFS 69
           ER + +GKK KR   VSS+   R  + GPP TLNTITPCAACKLLRRRC Q+CPF+PYFS
Sbjct: 6   ERFDEIGKKIKREADVSSHHMGRRHMLGPPGTLNTITPCAACKLLRRRCAQECPFSPYFS 65

Query: 70  PHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAISCL 129
           PHEP KFASVHKVFGASNVSKML EVP+++R +  NSL+YEANVRLRDPVYGCMGAIS L
Sbjct: 66  PHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISAL 125

Query: 130 QHQVQALQATLTAVRAEILRCKYRQGNM-------------VSIAVQP-----PPPPPPE 189
           Q QVQ+LQA L AVRAEIL+ K R+ N+             VS+A  P     PPPPPP 
Sbjct: 126 QQQVQSLQAELNAVRAEILKYKCREANLIPSSHVALLSSGAVSVAALPSAPTHPPPPPPP 185

Query: 190 LPPPPHQDASSSSSTLYNRPTVAADSS 197
            P PP    +SSSS++Y +PT AAD S
Sbjct: 186 PPLPP----TSSSSSMYTQPTTAADYS 208

[Close]
BLAST of CmoCh04G001100 vs. TAIR10
Match: AT2G40470.1 (AT2G40470.1 LOB domain-containing protein 15)

HSP 1 Score: 211.8 bits (538), Expect = 3.8e-55
Identity = 120/204 (58.82%), Postives = 140/204 (68.63%), Query Frame = 1 

Query: 10  ERSEVLGKKRKRAVSS----NIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPY 69
           ER E +GKK KR   +        R  + GPP TLNTITPCAACKLLRRRC Q+CPF+PY
Sbjct: 6   ERFEEIGKKIKREADAWPHQMAGIRRPMSGPPGTLNTITPCAACKLLRRRCAQECPFSPY 65

Query: 70  FSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAIS 129
           FSPHEPHKFASVHKVFGASNVSKML EVP+++R +  NSL+YEANVRLRDPVYGCMGAIS
Sbjct: 66  FSPHEPHKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAIS 125

Query: 130 CLQHQVQALQATLTAVRAEILRCKYRQGNMVSIAVQPPP---------------PPPPEL 189
            LQ QVQALQA LTAVR+EIL  KY+Q   V+  + P                  PPP+ 
Sbjct: 126 ALQQQVQALQAELTAVRSEIL--KYKQREAVATLIVPSNSQVAGFHNSGGVSVIAPPPQR 185

Query: 190 PPPPHQDAS----SSSSTLYNRPT 191
           P  P Q  +    S SS ++++PT
Sbjct: 186 PTTPPQPTTAHPPSPSSCVFSQPT 207

[Close]
BLAST of CmoCh04G001100 vs. TAIR10
Match: AT2G30340.1 (AT2G30340.1 LOB domain-containing protein 13)

HSP 1 Score: 194.9 bits (494), Expect = 4.8e-50
Identity = 88/128 (68.75%), Postives = 107/128 (83.59%), Query Frame = 1 

Query: 30  RHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKM 89
           RH    P  TLNT+TPCAACKLLRRRC ++CPF+PYFSPHEPHKFA+VHKVFGASNVSKM
Sbjct: 37  RHVAVPPGTTLNTVTPCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKM 96

Query: 90  LKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCK 149
           L EV +++R +  NSL+YEAN+RLRDP+YGCMGAIS LQH +Q+LQ+ LT VR EILR K
Sbjct: 97  LLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQSELTTVRTEILRHK 156

Query: 150 YRQGNMVS 158
           Y++   ++
Sbjct: 157 YQEATTIT 164

[Close]
BLAST of CmoCh04G001100 vs. TAIR10
Match: AT2G30130.1 (AT2G30130.1 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 148.7 bits (374), Expect = 3.9e-36
Identity = 69/103 (66.99%), Postives = 84/103 (81.55%), Query Frame = 1 

Query: 44  TPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTN 103
           +PCA+CKLLRRRC + C FAPYF P +PHKFA VHKVFGASNVSKML+E+P ++R +  N
Sbjct: 7   SPCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNVSKMLQELPVHQRADAVN 66

Query: 104 SLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEIL 147
           SL++EAN R+RDPVYGC+GAIS LQ+QV  LQ  L   +AEIL
Sbjct: 67  SLVFEANARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQAEIL 109

[Close]
BLAST of CmoCh04G001100 vs. TAIR10
Match: AT5G63090.2 (AT5G63090.2 Lateral organ boundaries (LOB) domain family protein)

HSP 1 Score: 142.1 bits (357), Expect = 3.7e-34
Identity = 78/163 (47.85%), Postives = 100/163 (61.35%), Query Frame = 1 

Query: 44  TPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTN 103
           +PCAACK LRR+C   C FAPYF P EPHKFA+VHK+FGASNV+K+L E+  ++R++  N
Sbjct: 10  SPCAACKFLRRKCMPGCIFAPYFPPEEPHKFANVHKIFGASNVTKLLNELLPHQREDAVN 69

Query: 104 SLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILR------CKYRQGNMVS 163
           SL YEA  R+RDPVYGC+GAIS LQ QV  LQ  L A  A++             GN+V 
Sbjct: 70  SLAYEAEARVRDPVYGCVGAISYLQRQVHRLQKELDAANADLAHYGLSTSAAGAPGNVVD 129

Query: 164 IAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSFFAF 201
           +  QP P P  +LPP       S +S + N+       S+  F
Sbjct: 130 LVFQPQPLPSQQLPPLNPVYRLSGASPVMNQMPRGTGGSYGTF 172

[Close]
BLAST of CmoCh04G001100 vs. TAIR10
Match: AT1G31320.1 (AT1G31320.1 LOB domain-containing protein 4)

HSP 1 Score: 140.6 bits (353), Expect = 1.1e-33
Identity = 72/159 (45.28%), Postives = 100/159 (62.89%), Query Frame = 1 

Query: 38  RTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNE 97
           R     +PCAACKLLRRRC Q C F+PYF   EP KFA+VH+VFGASNV+KML+E+P ++
Sbjct: 6   RKQGAASPCAACKLLRRRCAQDCVFSPYFPADEPQKFANVHRVFGASNVNKMLQELPIHQ 65

Query: 98  RDNTTNSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVS 157
           R +  +S++YEAN R+RDPVYGC+GAIS LQ Q+  LQA L   +AE++  + RQ     
Sbjct: 66  RGDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDVLQAQLALAQAEVVHLRVRQSTNFP 125

Query: 158 IAVQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSS 197
                P  P     P   Q +   +  +++   +  ++S
Sbjct: 126 GHGLCPDSPSSSGSPSSKQVSPQDNKGMFSHMDIVDEAS 164

[Close]
BLAST of CmoCh04G001100 vs. NCBI nr
Match: gi|449457480|ref|XP_004146476.1| (PREDICTED: LOB domain-containing protein 15 [Cucumis sativus])

HSP 1 Score: 263.1 bits (671), Expect = 4.0e-67
Identity = 143/217 (65.90%), Postives = 161/217 (74.19%), Query Frame = 1 

Query: 10  ERSEVLGKKRKRA--VSSNIPP------RHTLHGPPRTLNTITPCAACKLLRRRCGQQCP 69
           ER + + KK KR   VSSNIPP      RH+L GPP  LNTITPCAACKLLRRRC Q+CP
Sbjct: 6   ERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGPPGALNTITPCAACKLLRRRCAQECP 65

Query: 70  FAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCM 129
           F+PYFSPHEPHKFASVHKVFGASNVSKML EV  N+R +  NSL+YEANVRLRDPVYGCM
Sbjct: 66  FSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSDNQRADAANSLVYEANVRLRDPVYGCM 125

Query: 130 GAISCLQHQVQALQATLTAVRAEILRCKYRQGN---------------------MVSIAV 189
           GAIS LQHQ+Q+LQA L AVRAEILR K+R+ N                     +VS+A+
Sbjct: 126 GAISALQHQIQSLQAELNAVRAEILRHKFREANNIIHSSPQQQHVPFLSSSSTVVVSVAL 185

Query: 190 QPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSF 198
            PPPPPPP LPPP H DASSSSS+LYNR TVAA + +
Sbjct: 186 -PPPPPPPPLPPPHHHDASSSSSSLYNRRTVAAAADY 221

[Close]
BLAST of CmoCh04G001100 vs. NCBI nr
Match: gi|659114146|ref|XP_008456927.1| (PREDICTED: LOB domain-containing protein 15 [Cucumis melo])

HSP 1 Score: 259.2 bits (661), Expect = 5.8e-66
Identity = 141/218 (64.68%), Postives = 160/218 (73.39%), Query Frame = 1 

Query: 10  ERSEVLGKKRKRA--VSSNIPP------RHTLHGPPRTLNTITPCAACKLLRRRCGQQCP 69
           ER + + KK KR   VSSNIPP      RH+L G P  LNTITPCAACKLLRRRC Q+CP
Sbjct: 6   ERFDEIAKKIKRETDVSSNIPPQQIMGRRHSLQGSPGALNTITPCAACKLLRRRCAQECP 65

Query: 70  FAPYFSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCM 129
           F+PYFSPHEPHKFASVHKVFGASNVSKML EV +N+R +  NSL+YEANVRLRDPVYGCM
Sbjct: 66  FSPYFSPHEPHKFASVHKVFGASNVSKMLMEVSENQRADAANSLVYEANVRLRDPVYGCM 125

Query: 130 GAISCLQHQVQALQATLTAVRAEILRCKYRQGN----------------------MVSIA 189
           GAIS LQHQ+Q+LQA L AVRAEILR K+R+ N                      +VS+A
Sbjct: 126 GAISALQHQIQSLQAELNAVRAEILRHKFREANNMIHSSPQQQHVPFLSSSSSTEVVSVA 185

Query: 190 VQPPPPPPPELPPPPHQDASSSSSTLYNRPTVAADSSF 198
           +   PPPPP LPPP H DASSSSS+LYNRPTVAA + +
Sbjct: 186 L---PPPPPPLPPPHHHDASSSSSSLYNRPTVAAAADY 220

[Close]
BLAST of CmoCh04G001100 vs. NCBI nr
Match: gi|728838615|gb|KHG18058.1| (LOB domain-containing 15 -like protein [Gossypium arboreum])

HSP 1 Score: 237.3 bits (604), Expect = 2.4e-59
Identity = 125/200 (62.50%), Postives = 150/200 (75.00%), Query Frame = 1 

Query: 10  ERSEVLGKKRKR----AVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPY 69
           ER + LGK+ KR    +    +  RH L  PP TLNTITPCAACKLLRRRC Q+CPF+PY
Sbjct: 6   ERFDELGKQIKREGGVSCHQQMGRRHIL-SPPGTLNTITPCAACKLLRRRCAQECPFSPY 65

Query: 70  FSPHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAIS 129
           FSPHEP KFASVHKVFGASNVSKML EVP+++R +  NSL+YEANVRLRDPVYGCMGAIS
Sbjct: 66  FSPHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAIS 125

Query: 130 CLQHQVQALQATLTAVRAEILRCKYRQGNMV-----------SIAVQPPPPPPPELPPPP 189
            LQHQVQ+LQA + AVRAEIL+ KYR+ N +           +++V  PPPPPP+ PPPP
Sbjct: 126 ALQHQVQSLQAEVHAVRAEILKYKYREANFIPSSLVALLSSGAVSVAAPPPPPPQPPPPP 185

Query: 190 HQDASSSSSTLYNRPTVAAD 195
               S+S+S++Y + T AAD
Sbjct: 186 LPTTSTSTSSMYTQLTTAAD 204

[Close]
BLAST of CmoCh04G001100 vs. NCBI nr
Match: gi|802778595|ref|XP_012091188.1| (PREDICTED: LOB domain-containing protein 15 [Jatropha curcas])

HSP 1 Score: 236.5 bits (602), Expect = 4.0e-59
Identity = 131/211 (62.09%), Postives = 154/211 (72.99%), Query Frame = 1 

Query: 10  ERSEVLGKKRKRAV--SSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFS 69
           ER + +GKK KR    SS +  RH L GPP TLNTITPCAACKLLRRRC Q+CPF+PYFS
Sbjct: 6   ERFDEIGKKIKRETDASSQMGRRHML-GPPGTLNTITPCAACKLLRRRCAQECPFSPYFS 65

Query: 70  PHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAISCL 129
           PHEP KFASVHKVFGASNVSKML EVP+++R +  NSL+YEANVRLRDPVYGCMGAIS L
Sbjct: 66  PHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISAL 125

Query: 130 QHQVQALQATLTAVRAEILRCKYRQGNMV-------------SIAV----------QPPP 189
           Q QVQ+LQA L A+RAEIL+ KYR+ N++             +++V          QPP 
Sbjct: 126 QQQVQSLQAELNAIRAEILKYKYREANIIPSSHQHIALLSSGAVSVVTQSPSLTPQQPPQ 185

Query: 190 PPPPELPPPPHQDASSSSSTLY-NRPTVAAD 195
           PPPP  PPPP    SSSSS++Y ++PT AAD
Sbjct: 186 PPPPPPPPPPLPPTSSSSSSIYTHQPTSAAD 215

[Close]
BLAST of CmoCh04G001100 vs. NCBI nr
Match: gi|255559635|ref|XP_002520837.1| (PREDICTED: LOB domain-containing protein 15 [Ricinus communis])

HSP 1 Score: 235.7 bits (600), Expect = 6.9e-59
Identity = 131/208 (62.98%), Postives = 153/208 (73.56%), Query Frame = 1 

Query: 10  ERSEVLGKKRKRAV--SSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFS 69
           ER + +GKK KR +  SS +  RH L GPP TLNTITPCAACKLLRRRC Q+CPF+PYFS
Sbjct: 6   ERFDEIGKKIKREIDASSQMGRRHML-GPPGTLNTITPCAACKLLRRRCAQECPFSPYFS 65

Query: 70  PHEPHKFASVHKVFGASNVSKMLKEVPKNERDNTTNSLIYEANVRLRDPVYGCMGAISCL 129
           PHEP KFASVHKVFGASNVSKML EVP+++R +  NSL+YEANVRLRDPVYGCMGAIS L
Sbjct: 66  PHEPQKFASVHKVFGASNVSKMLMEVPESQRADAANSLVYEANVRLRDPVYGCMGAISAL 125

Query: 130 QHQVQALQATLTAVRAEILRCKYRQGNM-------------VSIA-----VQPPPPPPPE 189
           Q Q+Q LQA L AVRAEIL+ KYR+ N+             VS+A     + PPPP PP 
Sbjct: 126 QQQIQTLQAELNAVRAEILKYKYREANILPSTHVALLSSGAVSVAATSQSLTPPPPTPPP 185

Query: 190 LPPPPHQDASSSSSTLY-NRPTVAADSS 197
            PPPP    +SSS++LY ++PT  AD S
Sbjct: 186 PPPPPPLPPTSSSTSLYTHQPTTVADYS 212

The following BLAST results are available for this feature:
BLAST of CmoCh04G001100 vs. Swiss-Prot
Match NameE-valueIdentityDescription
LBD15_ARATH6.7e-5458.82LOB domain-containing protein 15 OS=Arabidopsis thaliana GN=LBD15 PE=2 SV=2[more]
LBD13_ARATH8.4e-4968.75LOB domain-containing protein 13 OS=Arabidopsis thaliana GN=LBD13 PE=2 SV=2[more]
LBD12_ARATH6.9e-3566.99LOB domain-containing protein 12 OS=Arabidopsis thaliana GN=LBD12 PE=2 SV=2[more]
LOB_ARATH6.5e-3347.85Protein LATERAL ORGAN BOUNDARIES OS=Arabidopsis thaliana GN=LOB PE=2 SV=1[more]
LBD4_ARATH1.9e-3245.28LOB domain-containing protein 4 OS=Arabidopsis thaliana GN=LBD4 PE=2 SV=1[more]
BLAST of CmoCh04G001100 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KM94_CUCSA2.8e-6765.90Uncharacterized protein OS=Cucumis sativus GN=Csa_5G219380 PE=4 SV=1[more]
A0A0B0NU48_GOSAR1.6e-5962.50LOB domain-containing 15-like protein OS=Gossypium arboreum GN=F383_01332 PE=4 S... [more]
A0A067JNV9_JATCU2.8e-5962.09Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03351 PE=4 SV=1[more]
B9S4B8_RICCO4.8e-5962.98LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_0689060 PE=4... [more]
A0A061FRT3_THECC2.4e-5863.29LOB domain-containing protein 15 OS=Theobroma cacao GN=TCM_045438 PE=4 SV=1[more]
BLAST of CmoCh04G001100 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G40470.13.8e-5558.82 LOB domain-containing protein 15[more]
AT2G30340.14.8e-5068.75 LOB domain-containing protein 13[more]
AT2G30130.13.9e-3666.99 Lateral organ boundaries (LOB) domain family protein[more]
AT5G63090.23.7e-3447.85 Lateral organ boundaries (LOB) domain family protein[more]
AT1G31320.11.1e-3345.28 LOB domain-containing protein 4[more]
BLAST of CmoCh04G001100 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449457480|ref|XP_004146476.1|4.0e-6765.90PREDICTED: LOB domain-containing protein 15 [Cucumis sativus][more]
gi|659114146|ref|XP_008456927.1|5.8e-6664.68PREDICTED: LOB domain-containing protein 15 [Cucumis melo][more]
gi|728838615|gb|KHG18058.1|2.4e-5962.50LOB domain-containing 15 -like protein [Gossypium arboreum][more]
gi|802778595|ref|XP_012091188.1|4.0e-5962.09PREDICTED: LOB domain-containing protein 15 [Jatropha curcas][more]
gi|255559635|ref|XP_002520837.1|6.9e-5962.98PREDICTED: LOB domain-containing protein 15 [Ricinus communis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004883LOB
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006536 glutamate metabolic process
biological_process GO:0006206 pyrimidine nucleobase metabolic process
biological_process GO:0008150 biological_process
cellular_component GO:0005951 carbamoyl-phosphate synthase complex
cellular_component GO:0005634 nucleus
cellular_component GO:0005575 cellular_component
molecular_function GO:0004088 carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh04G001100.1CmoCh04G001100.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004883Lateral organ boundaries, LOBPFAMPF03195DUF260coord: 45..142
score: 1.9
IPR004883Lateral organ boundaries, LOBPROFILEPS50891LOBcoord: 44..145
score: 24
NoneNo IPR availableunknownCoilCoilcoord: 124..144
scor
NoneNo IPR availablePANTHERPTHR31301FAMILY NOT NAMEDcoord: 18..174
score: 4.0
NoneNo IPR availablePANTHERPTHR31301:SF2LOB DOMAIN-CONTAINING PROTEIN 15coord: 18..174
score: 4.0