ClCG06G001390 (gene) Watermelon (Charleston Gray)

Overview
NameClCG06G001390
Typegene
OrganismCitrullus lanatus (Watermelon (Charleston Gray))
DescriptionUnknown protein
LocationCG_Chr06 : 1467291 .. 1467653 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGGCGAGAAGCAAGGACAAGGCATTCGAGCGGGTGAGGTTGGAAGGTGGAAACATAGGAGCCTCAATGTCAGTGAGCCATGGAGGAGAAGGTAAATTACACAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTTCTTCTTCTTTGGAGATATGGAACCAAAATCACATCAAAATAACACTTCATCACTTCATCAAATTCCCAAGCTATGGCAATGGAGTTTAATGCTTCTTCTTCTTCTTCTTCTACTCCTCTTTCTGTTACTTCTAGAAATGAAAATGCTTCATTCTTAA

mRNA sequence

ATGGAGGCGAGAAGCAAGGACAAGGCATTCGAGCGGGTGAGGTTGGAAGGTGGAAACATAGGAGCCTCAATGTCAGTGAGCCATGGAGGAGAAGGTAAATTACACAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTTCTTCTTCTTTGGAGATATGGAACCAAAATCACATCAAAATAACACTTCATCACTTCATCAAATTCCCAAGCTATGGCAATGGAGTTTAATGCTTCTTCTTCTTCTTCTTCTACTCCTCTTTCTGTTACTTCTAGAAATGAAAATGCTTCATTCTTAA

Coding sequence (CDS)

ATGGAGGCGAGAAGCAAGGACAAGGCATTCGAGCGGGTGAGGTTGGAAGGTGGAAACATAGGAGCCTCAATGTCAGTGAGCCATGGAGGAGAAGGTAAATTACACAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTTCTTCTTCTTTGGAGATATGGAACCAAAATCACATCAAAATAACACTTCATCACTTCATCAAATTCCCAAGCTATGGCAATGGAGTTTAATGCTTCTTCTTCTTCTTCTTCTACTCCTCTTTCTGTTACTTCTAGAAATGAAAATGCTTCATTCTTAA

Protein sequence

MEARSKDKAFERVRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGVFFFFGDMEPKSHQNNTSSLHQIPKLWQWSLMLLLLLLLLLFLLLLEMKMLHS
Homology
[Close]
BLAST of ClCG06G001390 vs. TrEMBL
Match: A0A0A0KBZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087970 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.3e-50
Identity = 101/123 (82.11%), Postives = 108/123 (87.80%), Query Frame = 1 

Query: 1   MEARSKDKAFERVRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSE 60
           MEAR +++A E VRLEGGN+GASMSVSHGGE KL NCCCINIYVNSNIQGVNNSTLNG E
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61  VKMGSPGVFFFFGDMEPKSHQNNTSSLHQIPKLWQWSLMLLLLLLL---LLFLLLLEMKM 120
           VKMGSPGVFF FGDMEPK HQN TSSLHQ PKLWQW LM+LLLL L   LLF+LLLE+KM
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

[Close]
BLAST of ClCG06G001390 vs. TAIR10
Match: AT2G20362.1 (AT2G20362.1 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-08
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 1 

Query: 13  VRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGVFFFF 72
           + L G N+GA M      +    + C INIYVNSN+Q    S L GS+VK+  PGV    
Sbjct: 17  INLNGRNVGAVMVAPRDVDIASQSGCRINIYVNSNVQATCGSALIGSKVKLRDPGVHLHI 76

Query: 73  GDMEPKSHQNNTSSLHQIPKLWQWSLMLLLLL-LLLLFLLLL 114
            D+  K  +++T S  +   L +  L L+ L  + L+F+L L
Sbjct: 77  DDV--KMTRDDTISRQKEMTLIKVGLCLVCLFNMFLVFILFL 116

[Close]
BLAST of ClCG06G001390 vs. NCBI nr
Match: gi|700191165|gb|KGN46369.1| (hypothetical protein Csa_6G087970 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-49
Identity = 101/123 (82.11%), Postives = 108/123 (87.80%), Query Frame = 1 

Query: 1   MEARSKDKAFERVRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSE 60
           MEAR +++A E VRLEGGN+GASMSVSHGGE KL NCCCINIYVNSNIQGVNNSTLNG E
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61  VKMGSPGVFFFFGDMEPKSHQNNTSSLHQIPKLWQWSLMLLLLLLL---LLFLLLLEMKM 120
           VKMGSPGVFF FGDMEPK HQN TSSLHQ PKLWQW LM+LLLL L   LLF+LLLE+KM
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

[Close]
BLAST of ClCG06G001390 vs. NCBI nr
Match: gi|947119218|gb|KRH67467.1| (hypothetical protein GLYMA_03G167700 [Glycine max])

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 1 

Query: 1   MEARSKDKAFERVRLEGGNIGASMSVSHGG-EGKLHNCCCINIYVNSNIQGVNNSTLNGS 60
           M++  K  +FE + LEG N+GA+M V H   +G+  +CCCINIYVN+N+QGV+NS L+GS
Sbjct: 1   MDSNFKHDSFEYINLEGENVGATMRVRHRSTKGESKDCCCINIYVNNNVQGVSNSVLHGS 60

Query: 61  EVKMGSPGVFFFFGDMEPKSHQNNTSSLHQIPKLWQWS-----LMLLLLLLLLLFLLLL 114
           EV+M  PGV  +F +++      +  +L    +L+ W       + +L LL LLFLL+L
Sbjct: 61  EVRMRDPGVSLYFENLKV-----DKGTLSSNKRLFSWDNKIGFWLCILNLLALLFLLVL 114

[Close]
BLAST of ClCG06G001390 vs. NCBI nr
Match: gi|590715276|ref|XP_007050149.1| (Uncharacterized protein TCM_003895 [Theobroma cacao])

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1 

Query: 9   AFERVRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGV 68
           +F RV LEG N GA+M +  G  G+   CCCINIY NSNIQG NNS L GS +KM +PGV
Sbjct: 13  SFNRVNLEGSNAGATMFIRRGTAGEPEGCCCINIYTNSNIQGANNSLLLGSNIKMKNPGV 72

Query: 69  FFFFGD--MEPKSHQNNTSSLHQIPKLWQWSLMLLLLLLLLLFLLL 113
             +FGD  ++P S    T+       L   SL L + + ++LFLLL
Sbjct: 73  HLYFGDLTLDPGSITRRTAG----ATLEFGSLFLFVFIPVILFLLL 114

[Close]
BLAST of ClCG06G001390 vs. NCBI nr
Match: gi|357510209|ref|XP_003625393.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 48/115 (41.74%), Postives = 73/115 (63.48%), Query Frame = 1 

Query: 1   MEARSKDKAFERVRLEGGNIGASMSVSH--GGEGKLHNCCCINIYVNSNIQGVNNSTLNG 60
           M+++ KD +FE + ++G N+GA+M + H    +G+  +CCCINIYVN+N+QGV NS L+ 
Sbjct: 1   MDSKFKDGSFEYINMDGKNVGATMRLHHRSNNKGESKDCCCINIYVNNNVQGVTNSVLHD 60

Query: 61  SEVKMGSPGVFFFFGDMEPKSHQNNTSSLHQIPKLWQWSLMLLLLLLLLLFLLLL 114
           SEV+M  PGV  +F D++        S          + L +L+LLL L+FLL+L
Sbjct: 61  SEVRMRDPGVSIYFEDLKFDKGIPTYSKRFCWGDKLGYCLCILILLLALIFLLVL 115

[Close]
BLAST of ClCG06G001390 vs. NCBI nr
Match: gi|703081936|ref|XP_010091821.1| (hypothetical protein L484_015890 [Morus notabilis])

HSP 1 Score: 92.0 bits (227), Expect = 7.4e-16
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = 1 

Query: 11  ERVRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGVFF 70
           ER++LEG N GAS S+  G     H+CCCINIY+N+NIQG NNS L  SEV M  PGV  
Sbjct: 59  ERIKLEGINAGASFSLDRGNGAAPHDCCCINIYINNNIQGANNSLLCESEVNMRDPGVHL 118

Query: 71  FFGDME----------PKSHQNNTSSLHQIPKLWQWSLMLLLLLLL 107
           FFGD++           +  + +TSS + +  L+ +   +LLLL L
Sbjct: 119 FFGDVKLGKRSLGRKRKREKKRSTSSAYNLGSLFAFVFSILLLLSL 164

The following BLAST results are available for this feature:
BLAST of ClCG06G001390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KBZ5_CUCSA9.3e-5082.11Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087970 PE=4 SV=1[more]
BLAST of ClCG06G001390 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G20362.14.6e-0836.27 unknown protein[more]
BLAST of ClCG06G001390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700191165|gb|KGN46369.1|1.3e-4982.11hypothetical protein Csa_6G087970 [Cucumis sativus][more]
gi|947119218|gb|KRH67467.1|2.5e-1642.86hypothetical protein GLYMA_03G167700 [Glycine max][more]
gi|590715276|ref|XP_007050149.1|2.5e-1648.11Uncharacterized protein TCM_003895 [Theobroma cacao][more]
gi|357510209|ref|XP_003625393.1|4.3e-1641.74transmembrane protein, putative [Medicago truncatula][more]
gi|703081936|ref|XP_010091821.1|7.4e-1645.28hypothetical protein L484_015890 [Morus notabilis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006810 transport
biological_process GO:0008150 biological_process
biological_process GO:0008152 metabolic process
biological_process GO:0055085 transmembrane transport
cellular_component GO:0005575 cellular_component
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0016887 ATPase activity
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0003674 molecular_function
molecular_function GO:0042626 ATPase activity, coupled to transmembrane movement of substances
molecular_function GO:0005524 ATP binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
ClCG06G001390.1ClCG06G001390.1mRNA


InterPro
Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR33472FAMILY NOT NAMEDcoord: 1..118
score: 2.0
NoneNo IPR availablePANTHERPTHR33472:SF2SUBFAMILY NOT NAMEDcoord: 1..118
score: 2.0