Cucsa.348840 (gene) Cucumber (Gy14) v1 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Cucsa.348840
Type	gene
Organism	Cucumis sativus (Cucumber (Gy14) v1)
Description	ABC transporter C family member 5
Location	scaffold03487 : 287078 .. 287366 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGCGAGAGACGAGAACGAGGCACTCGAGGGAGTGAGGTTGGAAGGTGGAAACATGGGAGCTTCAATGTCAGTCAGCCATGGAGGTGAGTGTAAATTACCTAACTGTTGTTGCATAAACATTTATGTGAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGGGCGAGGTCAAAATGGGAAGTCCAGGAGTTTTCTTCTTGTTTGGAGATATGGAACCAAAACTACATCAAAATAAAACTTCATCCCTTCATCAAAATCCCAAGTTATGGCAATGGG

mRNA sequence

ATGGAAGCGAGAGACGAGAACGAGGCACTCGAGGGAGTGAGGTTGGAAGGTGGAAACATGGGAGCTTCAATGTCAGTCAGCCATGGAGGTGAGTGTAAATTACCTAACTGTTGTTGCATAAACATTTATGTGAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGGGCGAGGTCAAAATGGGAAGTCCAGGAGTTTTCTTCTTGTTTGGAGATATGGAACCAAAACTACATCAAAATAAAACTTCATCCCTTCATCAAAATCCCAAGTTATGGCAATGGG

Coding sequence (CDS)

ATGGAAGCGAGAGACGAGAACGAGGCACTCGAGGGAGTGAGGTTGGAAGGTGGAAACATGGGAGCTTCAATGTCAGTCAGCCATGGAGGTGAGTGTAAATTACCTAACTGTTGTTGCATAAACATTTATGTGAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGGGCGAGGTCAAAATGGGAAGTCCAGGAGTTTTCTTCTTGTTTGGAGATATGGAACCAAAACTACATCAAAATAAAACTTCATCCCTTCATCAAAATCCCAAGTTATGGCAATGGG

Protein sequence

MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGEVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWX

Homology

[Close]

BLAST of Cucsa.348840 vs. TrEMBL
Match: A0A0A0KBZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087970 PE=4 SV=1)

HSP 1 Score: 207.6 bits (527), Expect = 6.8e-51
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60
          MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE
Sbjct: 1  MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61 VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQW 97
          VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQW
Sbjct: 61 VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQW 96

[Close]

BLAST of Cucsa.348840 vs. TrEMBL
Match: M1AG80_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008578 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 4.3e-13
Identity = 44/87 (50.57%), Postives = 56/87 (64.37%), Query Frame = 1


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGG-ECKLPNCCCINIYVNSNIQGVNNSTLNGG 60
          M   + +   E V+LEG N+GASM    GG   +  +CCCINIY+++NIQGVNNS L G 
Sbjct: 1  MSPENRHGQFEHVKLEGKNVGASMIARRGGCSGESHDCCCINIYISNNIQGVNNSILFGS 60

Query: 61 EVKMGSPGVFFLFGDMEPKLHQNKTSS 87
          +VKMG PGV F   D+  KLH+ K  S
Sbjct: 61 KVKMGDPGVSFSMKDV--KLHRGKMGS 85

[Close]

BLAST of Cucsa.348840 vs. TrEMBL
Match: K7KFJ6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G167700 PE=4 SV=1)

HSP 1 Score: 80.1 bits (196), Expect = 1.6e-12
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHG---GECKLPNCCCINIYVNSNIQGVNNSTLN 60
          M++  ++++ E + LEG N+GA+M V H    GE K  +CCCINIYVN+N+QGV+NS L+
Sbjct: 1  MDSNFKHDSFEYINLEGENVGATMRVRHRSTKGESK--DCCCINIYVNNNVQGVSNSVLH 60

Query: 61 GGEVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQW 97
          G EV+M  PGV   F +++         +L  N +L+ W
Sbjct: 61 GSEVRMRDPGVSLYFENLKV-----DKGTLSSNKRLFSW 92

[Close]

BLAST of Cucsa.348840 vs. TrEMBL
Match: A0A0S3RY88_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G313900 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGGECKLP-NCCCINIYVNSNIQGVNNSTLNGG 60
          ME++ +N++ E + L+G N+GA+M + H      P +CCCINIYVN+N+QGV+NS L+G 
Sbjct: 1  MESKFKNDSFEYINLDGKNVGATMHIHHRSTKVDPKDCCCINIYVNNNVQGVSNSVLHGS 60

Query: 61 EVKMGSPGVFFLFGDME 77
          +V+M  PGV   F +++
Sbjct: 61 QVRMRDPGVSLYFENLK 77

[Close]

BLAST of Cucsa.348840 vs. TrEMBL
Match: V7CWU8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G165400g PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 1.1e-11
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGGECKLP-NCCCINIYVNSNIQGVNNSTLNGG 60
          M+++ +N++ E + L+G N+GA+M + H      P +CCCINIYVN+N+QGV+NS L+G 
Sbjct: 1  MDSKFKNDSFEYINLDGKNVGATMHIHHRSTKGDPKDCCCINIYVNNNVQGVSNSVLHGS 60

Query: 61 EVKMGSPGVFFLFGDME 77
          EV+M  PGV   F +++
Sbjct: 61 EVRMRDPGVSLYFENLK 77

[Close]

BLAST of Cucsa.348840 vs. TAIR10
Match: AT2G20362.1 (AT2G20362.1 unknown protein)

HSP 1 Score: 50.1 bits (118), Expect = 9.2e-07
Identity = 26/65 (40.00%), Postives = 35/65 (53.85%), Query Frame = 1


Query: 12 GVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGEVKMGSPGVFFL 71
          G+ L G N+GA M      +    + C INIYVNSN+Q    S L G +VK+  PGV   
Sbjct: 16 GINLNGRNVGAVMVAPRDVDIASQSGCRINIYVNSNVQATCGSALIGSKVKLRDPGVHLH 75

Query: 72 FGDME 77
            D++
Sbjct: 76 IDDVK 80

[Close]

BLAST of Cucsa.348840 vs. NCBI nr
Match: gi|700191165|gb|KGN46369.1| (hypothetical protein Csa_6G087970 [Cucumis sativus])

HSP 1 Score: 207.6 bits (527), Expect = 9.7e-51
Identity = 96/96 (100.00%), Postives = 96/96 (100.00%), Query Frame = 1


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60
          MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE
Sbjct: 1  MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61 VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQW 97
          VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQW
Sbjct: 61 VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQW 96

[Close]

BLAST of Cucsa.348840 vs. NCBI nr
Match: gi|947119218|gb|KRH67467.1| (hypothetical protein GLYMA_03G167700 [Glycine max])

HSP 1 Score: 80.1 bits (196), Expect = 2.3e-12
Identity = 42/99 (42.42%), Postives = 63/99 (63.64%), Query Frame = 1


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHG---GECKLPNCCCINIYVNSNIQGVNNSTLN 60
          M++  ++++ E + LEG N+GA+M V H    GE K  +CCCINIYVN+N+QGV+NS L+
Sbjct: 1  MDSNFKHDSFEYINLEGENVGATMRVRHRSTKGESK--DCCCINIYVNNNVQGVSNSVLH 60

Query: 61 GGEVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQW 97
          G EV+M  PGV   F +++         +L  N +L+ W
Sbjct: 61 GSEVRMRDPGVSLYFENLKV-----DKGTLSSNKRLFSW 92

[Close]

BLAST of Cucsa.348840 vs. NCBI nr
Match: gi|593799134|ref|XP_007162605.1| (hypothetical protein PHAVU_001G165400g [Phaseolus vulgaris])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGGECKLP-NCCCINIYVNSNIQGVNNSTLNGG 60
          M+++ +N++ E + L+G N+GA+M + H      P +CCCINIYVN+N+QGV+NS L+G 
Sbjct: 1  MDSKFKNDSFEYINLDGKNVGATMHIHHRSTKGDPKDCCCINIYVNNNVQGVSNSVLHGS 60

Query: 61 EVKMGSPGVFFLFGDME 77
          EV+M  PGV   F +++
Sbjct: 61 EVRMRDPGVSLYFENLK 77

[Close]

BLAST of Cucsa.348840 vs. NCBI nr
Match: gi|694314669|ref|XP_009372180.1| (PREDICTED: uncharacterized protein LOC103961360 [Pyrus x bretschneideri])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 37/78 (47.44%), Postives = 49/78 (62.82%), Query Frame = 1


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHG--GECKLPNCCCINIYVNSNIQGVNNSTLNG 60
          ME   +    E + LEG N GAS S+  G   E    +CCCINIY+N+N+QG N+S L+G
Sbjct: 1  MEPNADRGFFERINLEGKNTGASFSIRPGIGAESHSSDCCCINIYINNNVQGANSSVLHG 60

Query: 61 GEVKMGSPGVFFLFGDME 77
            VKM  PGV+  FGD++
Sbjct: 61 SCVKMKDPGVYLFFGDVK 78

[Close]

BLAST of Cucsa.348840 vs. NCBI nr
Match: gi|965670970|dbj|BAT85577.1| (hypothetical protein VIGAN_04313900 [Vigna angularis var. angularis])

HSP 1 Score: 77.4 bits (189), Expect = 1.5e-11
Identity = 35/77 (45.45%), Postives = 55/77 (71.43%), Query Frame = 1


Query: 1  MEARDENEALEGVRLEGGNMGASMSVSHGGECKLP-NCCCINIYVNSNIQGVNNSTLNGG 60
          ME++ +N++ E + L+G N+GA+M + H      P +CCCINIYVN+N+QGV+NS L+G 
Sbjct: 1  MESKFKNDSFEYINLDGKNVGATMHIHHRSTKVDPKDCCCINIYVNNNVQGVSNSVLHGS 60

Query: 61 EVKMGSPGVFFLFGDME 77
          +V+M  PGV   F +++
Sbjct: 61 QVRMRDPGVSLYFENLK 77

The following BLAST results are available for this feature:

BLAST of Cucsa.348840 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ5_CUCSA	6.8e-51	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087970 PE=4 SV=1	[more]
M1AG80_SOLTU	4.3e-13	50.57	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400008578 PE=4 SV=1	[more]
K7KFJ6_SOYBN	1.6e-12	42.42	Uncharacterized protein OS=Glycine max GN=GLYMA_03G167700 PE=4 SV=1	[more]
A0A0S3RY88_PHAAN	1.1e-11	45.45	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.04G313900 PE=...	[more]
V7CWU8_PHAVU	1.1e-11	45.45	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G165400g PE=4 SV=1	[more]

BLAST of Cucsa.348840 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20362.1	9.2e-07	40.00	unknown protein	[more]

BLAST of Cucsa.348840 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191165\|gb\|KGN46369.1\|	9.7e-51	100.00	hypothetical protein Csa_6G087970 [Cucumis sativus]	[more]
gi\|947119218\|gb\|KRH67467.1\|	2.3e-12	42.42	hypothetical protein GLYMA_03G167700 [Glycine max]	[more]
gi\|593799134\|ref\|XP_007162605.1\|	1.5e-11	45.45	hypothetical protein PHAVU_001G165400g [Phaseolus vulgaris]	[more]
gi\|694314669\|ref\|XP_009372180.1\|	1.5e-11	47.44	PREDICTED: uncharacterized protein LOC103961360 [Pyrus x bretschneideri]	[more]
gi\|965670970\|dbj\|BAT85577.1\|	1.5e-11	45.45	hypothetical protein VIGAN_04313900 [Vigna angularis var. angularis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Cucsa.348840.1	Cucsa.348840.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Gy14)
Date Performed: 2017-01-17


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472	FAMILY NOT NAMED	coord: 1..86 score: 2.6
None	No IPR available	PANTHER	PTHR33472:SF2	SUBFAMILY NOT NAMED	coord: 1..86 score: 2.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Cucsa.348840	Cla007061	Watermelon (97103) v1	cgywmB626
Cucsa.348840	Csa6G087970	Cucumber (Chinese Long) v2	cgycuB490
Cucsa.348840	ClCG06G001390	Watermelon (Charleston Gray)	cgywcgB595
Cucsa.348840	CSPI06G06960	Wild cucumber (PI 183967)	cgycpiB517
Cucsa.348840	CmaCh08G000450	Cucurbita maxima (Rimu)	cgycmaB0955
Cucsa.348840	CsaV3_6G007330	Cucumber (Chinese Long) v3	cgycucB532
Cucsa.348840	Cla97C06G110690	Watermelon (97103) v2	cgywmbB596
Cucsa.348840	Bhi12G002082	Wax gourd	cgywgoB696

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Cucsa.348840	Melon (DHL92) v3.6.1	cgymedB565
Cucsa.348840	Silver-seed gourd	carcgyB0012
Cucsa.348840	Silver-seed gourd	carcgyB1099
Cucsa.348840	Cucumber (Chinese Long) v3	cgycucB531
Cucsa.348840	Cucumber (Gy14) v1	cgycgyB129
Cucsa.348840	Cucurbita maxima (Rimu)	cgycmaB0951
Cucsa.348840	Cucurbita moschata (Rifu)	cgycmoB0955
Cucsa.348840	Cucurbita moschata (Rifu)	cgycmoB0951
Cucsa.348840	Wild cucumber (PI 183967)	cgycpiB516
Cucsa.348840	Cucumber (Chinese Long) v2	cgycuB489
Cucsa.348840	Melon (DHL92) v3.5.1	cgymeB564
Cucsa.348840	Watermelon (97103) v1	cgywmB625
Cucsa.348840	Cucurbita pepo (Zucchini)	cgycpeB0907
Cucsa.348840	Cucurbita pepo (Zucchini)	cgycpeB0911
Cucsa.348840	Bottle gourd (USVL1VR-Ls)	cgylsiB562