Csa6G087970 (gene) Cucumber (Chinese Long) v2 | Cucurbit Genomics Database (CuGenDB)

Overview


Name	Csa6G087970
Type	gene
Organism	Cucumis. sativus (Cucumber (Chinese Long) v2)
Description	Unknown protein
Location	Chr6 : 5964517 .. 5964928 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GATGATGTTATAGAGTTTCGGCAATAGAAGCGAAGGAAAGATGGAAGCGAGAGACGAGAACGAGGCACTCGAGGGAGTGAGGTTGGAAGGTGGAAACATGGGAGCTTCAATGTCAGTCAGCCATGGAGGTGAGTGTAAATTACCTAACTGTTGTTGCATAAACATTTATGTGAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGGGCGAGGTCAAAATGGGAAGTCCAGGAGTTTTCTTCTTGTTTGGAGATATGGAACCAAAACTACATCAAAATAAAACTTCATCCCTTCATCAAAATCCCAAGTTATGGCAATGGGGTTTAATGATTCTTCTTCTTCTTTTTCTTCTTCTACCACTCCTTTTTATGTTACTTTTAGAAATCAAAATGCTTCATTCGTAA

mRNA sequence

ATGGAAGCGAGAGACGAGAACGAGGCACTCGAGGGAGTGAGGTTGGAAGGTGGAAACATGGGAGCTTCAATGTCAGTCAGCCATGGAGGTGAGTGTAAATTACCTAACTGTTGTTGCATAAACATTTATGTGAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGGGCGAGGTCAAAATGGGAAGTCCAGGAGTTTTCTTCTTGTTTGGAGATATGGAACCAAAACTACATCAAAATAAAACTTCATCCCTTCATCAAAATCCCAAGTTATGGCAATGGGGTTTAATGATTCTTCTTCTTCTTTTTCTTCTTCTACCACTCCTTTTTATGTTACTTTTAGAAATCAAAATGCTTCATTCGTAA

Coding sequence (CDS)

ATGGAAGCGAGAGACGAGAACGAGGCACTCGAGGGAGTGAGGTTGGAAGGTGGAAACATGGGAGCTTCAATGTCAGTCAGCCATGGAGGTGAGTGTAAATTACCTAACTGTTGTTGCATAAACATTTATGTGAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGGGCGAGGTCAAAATGGGAAGTCCAGGAGTTTTCTTCTTGTTTGGAGATATGGAACCAAAACTACATCAAAATAAAACTTCATCCCTTCATCAAAATCCCAAGTTATGGCAATGGGGTTTAATGATTCTTCTTCTTCTTTTTCTTCTTCTACCACTCCTTTTTATGTTACTTTTAGAAATCAAAATGCTTCATTCGTAA

Protein sequence

MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGEVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKMLHS*

Homology

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BLAST of Csa6G087970 vs. TrEMBL
Match: A0A0A0KBZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087970 PE=4 SV=1)

HSP 1 Score: 256.1 bits (653), Expect = 2.1e-65
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60
           MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120
           VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

Query: 121 LHS 124
           LHS
Sbjct: 121 LHS 123

[Close]

BLAST of Csa6G087970 vs. TrEMBL
Match: A0A059A2V7_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01423 PE=4 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 5.9e-15
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 1


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60
           M       + + V+LE    GA+M V  G   +  + CC+NIY+NSN+QGV+NS L G +
Sbjct: 1   MAPETSRASFDHVKLEEMGFGAAMFVHRGCTGESKDNCCVNIYINSNVQGVSNSILVGSD 60

Query: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGL---MILLLLFLLLPLLFMLLL 117
           V+MG PGV   FGD++P  + +K    HQ  K W++GL   ++ LL+F LL LL +L+L
Sbjct: 61  VRMGDPGVSLYFGDVKP-TNAHKKRGRHQRIK-WRFGLGSFVVSLLVFALLLLLLLLML 117

[Close]

BLAST of Csa6G087970 vs. TrEMBL
Match: K7KFJ6_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_03G167700 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.7e-14
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 1


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHG---GECKLPNCCCINIYVNSNIQGVNNSTLN 60
           M++  ++++ E + LEG N+GA+M V H    GE K  +CCCINIYVN+N+QGV+NS L+
Sbjct: 1   MDSNFKHDSFEYINLEGENVGATMRVRHRSTKGESK--DCCCINIYVNNNVQGVSNSVLH 60

Query: 61  GGEVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMI--LLLLFLLLPLLFMLL 117
           G EV+M  PGV   F +++         +L  N +L+ W   I   L +  LL LLF+L+
Sbjct: 61  GSEVRMRDPGVSLYFENLKV-----DKGTLSSNKRLFSWDNKIGFWLCILNLLALLFLLV 114

[Close]

BLAST of Csa6G087970 vs. TrEMBL
Match: K7MYS2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G168900 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 8.5e-14
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHG---GECKLPNCCCINIYVNSNIQGVNNSTLN 60
           M++  ++++ E + L+G N+GA+M + H    GE K  +CCCINIYVN+N+QGV+NS L+
Sbjct: 1   MDSNFKHDSFEYINLDGKNVGATMRLQHRSSKGESK--DCCCINIYVNNNVQGVSNSVLH 60

Query: 61  GGEVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLE 120
           G EV+M  PGV   F ++  K+ +   SS     K   WG  + +L FL L  L +LL  
Sbjct: 61  GSEVRMRDPGVSLYFENL--KVDKGTPSS----NKTLCWGNKLCMLKFLALMFLLVLLFS 116

Query: 121 IKML 122
            + +
Sbjct: 121 TRSI 116

[Close]

BLAST of Csa6G087970 vs. TrEMBL
Match: V7CWU8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G165400g PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 3.2e-13
Identity = 45/117 (38.46%), Postives = 70/117 (59.83%), Query Frame = 1


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLP-NCCCINIYVNSNIQGVNNSTLNGG 60
           M+++ +N++ E + L+G N+GA+M + H      P +CCCINIYVN+N+QGV+NS L+G 
Sbjct: 1   MDSKFKNDSFEYINLDGKNVGATMHIHHRSTKGDPKDCCCINIYVNNNVQGVSNSVLHGS 60

Query: 61  EVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLL 117
           EV+M  PGV   F      L  ++ +    N   W+      L +  LL L+F+L+L
Sbjct: 61  EVRMRDPGVSLYF----ENLKFDRGTPTSSNNFFWRNRFGFWLCMVHLLALMFLLVL 113

[Close]

BLAST of Csa6G087970 vs. TAIR10
Match: AT2G20362.1 (AT2G20362.1 unknown protein)

HSP 1 Score: 56.2 bits (134), Expect = 1.6e-08
Identity = 35/103 (33.98%), Postives = 50/103 (48.54%), Query Frame = 1


Query: 12  GVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGEVKMGSPGVFFL 71
           G+ L G N+GA M      +    + C INIYVNSN+Q    S L G +VK+  PGV   
Sbjct: 16  GINLNGRNVGAVMVAPRDVDIASQSGCRINIYVNSNVQATCGSALIGSKVKLRDPGVHLH 75

Query: 72  FGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFML 115
             D+  K+ ++ T S  +   L + GL ++ L  + L  +  L
Sbjct: 76  IDDV--KMTRDDTISRQKEMTLIKVGLCLVCLFNMFLVFILFL 116

[Close]

BLAST of Csa6G087970 vs. NCBI nr
Match: gi|700191165|gb|KGN46369.1| (hypothetical protein Csa_6G087970 [Cucumis sativus])

HSP 1 Score: 256.1 bits (653), Expect = 3.1e-65
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 1


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60
           MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120
           VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

Query: 121 LHS 124
           LHS
Sbjct: 121 LHS 123

[Close]

BLAST of Csa6G087970 vs. NCBI nr
Match: gi|702492167|ref|XP_010036150.1| (PREDICTED: uncharacterized protein LOC104425223 [Eucalyptus grandis])

HSP 1 Score: 88.6 bits (218), Expect = 8.4e-15
Identity = 50/119 (42.02%), Postives = 73/119 (61.34%), Query Frame = 1


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60
           M       + + V+LE    GA+M V  G   +  + CC+NIY+NSN+QGV+NS L G +
Sbjct: 1   MAPETSRASFDHVKLEEMGFGAAMFVHRGCTGESKDNCCVNIYINSNVQGVSNSILVGSD 60

Query: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGL---MILLLLFLLLPLLFMLLL 117
           V+MG PGV   FGD++P  + +K    HQ  K W++GL   ++ LL+F LL LL +L+L
Sbjct: 61  VRMGDPGVSLYFGDVKP-TNAHKKRGRHQRIK-WRFGLGSFVVSLLVFALLLLLLLLML 117

[Close]

BLAST of Csa6G087970 vs. NCBI nr
Match: gi|947119218|gb|KRH67467.1| (hypothetical protein GLYMA_03G167700 [Glycine max])

HSP 1 Score: 87.0 bits (214), Expect = 2.5e-14
Identity = 51/121 (42.15%), Postives = 75/121 (61.98%), Query Frame = 1


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHG---GECKLPNCCCINIYVNSNIQGVNNSTLN 60
           M++  ++++ E + LEG N+GA+M V H    GE K  +CCCINIYVN+N+QGV+NS L+
Sbjct: 1   MDSNFKHDSFEYINLEGENVGATMRVRHRSTKGESK--DCCCINIYVNNNVQGVSNSVLH 60

Query: 61  GGEVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMI--LLLLFLLLPLLFMLL 117
           G EV+M  PGV   F +++         +L  N +L+ W   I   L +  LL LLF+L+
Sbjct: 61  GSEVRMRDPGVSLYFENLKV-----DKGTLSSNKRLFSWDNKIGFWLCILNLLALLFLLV 114

[Close]

BLAST of Csa6G087970 vs. NCBI nr
Match: gi|947046120|gb|KRG95749.1| (hypothetical protein GLYMA_19G168900 [Glycine max])

HSP 1 Score: 84.7 bits (208), Expect = 1.2e-13
Identity = 49/124 (39.52%), Postives = 75/124 (60.48%), Query Frame = 1


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHG---GECKLPNCCCINIYVNSNIQGVNNSTLN 60
           M++  ++++ E + L+G N+GA+M + H    GE K  +CCCINIYVN+N+QGV+NS L+
Sbjct: 1   MDSNFKHDSFEYINLDGKNVGATMRLQHRSSKGESK--DCCCINIYVNNNVQGVSNSVLH 60

Query: 61  GGEVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLE 120
           G EV+M  PGV   F ++  K+ +   SS     K   WG  + +L FL L  L +LL  
Sbjct: 61  GSEVRMRDPGVSLYFENL--KVDKGTPSS----NKTLCWGNKLCMLKFLALMFLLVLLFS 116

Query: 121 IKML 122
            + +
Sbjct: 121 TRSI 116

[Close]

BLAST of Csa6G087970 vs. NCBI nr
Match: gi|593799134|ref|XP_007162605.1| (hypothetical protein PHAVU_001G165400g [Phaseolus vulgaris])

HSP 1 Score: 82.8 bits (203), Expect = 4.6e-13
Identity = 45/117 (38.46%), Postives = 70/117 (59.83%), Query Frame = 1


Query: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLP-NCCCINIYVNSNIQGVNNSTLNGG 60
           M+++ +N++ E + L+G N+GA+M + H      P +CCCINIYVN+N+QGV+NS L+G 
Sbjct: 1   MDSKFKNDSFEYINLDGKNVGATMHIHHRSTKGDPKDCCCINIYVNNNVQGVSNSVLHGS 60

Query: 61  EVKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLL 117
           EV+M  PGV   F      L  ++ +    N   W+      L +  LL L+F+L+L
Sbjct: 61  EVRMRDPGVSLYF----ENLKFDRGTPTSSNNFFWRNRFGFWLCMVHLLALMFLLVL 113

The following BLAST results are available for this feature:

BLAST of Csa6G087970 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ5_CUCSA	2.1e-65	100.00	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087970 PE=4 SV=1	[more]
A0A059A2V7_EUCGR	5.9e-15	42.02	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K01423 PE=4 SV=1	[more]
K7KFJ6_SOYBN	1.7e-14	42.15	Uncharacterized protein OS=Glycine max GN=GLYMA_03G167700 PE=4 SV=1	[more]
K7MYS2_SOYBN	8.5e-14	39.52	Uncharacterized protein OS=Glycine max GN=GLYMA_19G168900 PE=4 SV=1	[more]
V7CWU8_PHAVU	3.2e-13	38.46	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G165400g PE=4 SV=1	[more]

BLAST of Csa6G087970 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20362.1	1.6e-08	33.98	unknown protein	[more]

BLAST of Csa6G087970 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191165\|gb\|KGN46369.1\|	3.1e-65	100.00	hypothetical protein Csa_6G087970 [Cucumis sativus]	[more]
gi\|702492167\|ref\|XP_010036150.1\|	8.4e-15	42.02	PREDICTED: uncharacterized protein LOC104425223 [Eucalyptus grandis]	[more]
gi\|947119218\|gb\|KRH67467.1\|	2.5e-14	42.15	hypothetical protein GLYMA_03G167700 [Glycine max]	[more]
gi\|947046120\|gb\|KRG95749.1\|	1.2e-13	39.52	hypothetical protein GLYMA_19G168900 [Glycine max]	[more]
gi\|593799134\|ref\|XP_007162605.1\|	4.6e-13	38.46	hypothetical protein PHAVU_001G165400g [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0008152	metabolic process
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0003674	molecular_function
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
Csa6G087970.1	Csa6G087970.1	mRNA

InterPro

Analysis Name: InterPro Annotations of cucumber (Chinese Long)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472	FAMILY NOT NAMED	coord: 1..121 score: 2.0
None	No IPR available	PANTHER	PTHR33472:SF2	SUBFAMILY NOT NAMED	coord: 1..121 score: 2.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
Csa6G087970	Cla007061	Watermelon (97103) v1	cuwmB537
Csa6G087970	ClCG06G001390	Watermelon (Charleston Gray)	cuwcgB476
Csa6G087970	Cla97C06G110690	Watermelon (97103) v2	cuwmbB468
Csa6G087970	Bhi12G002082	Wax gourd	cuwgoB533
Csa6G087970	CSPI06G06960	Wild cucumber (PI 183967)	cpicuB314
Csa6G087970	Cucsa.348840	Cucumber (Gy14) v1	cgycuB490
Csa6G087970	CmaCh08G000450	Cucurbita maxima (Rimu)	cmacuB903

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
Csa6G087970	Cucumber (Chinese Long) v2	cucuB118
Csa6G087970	Cucurbita maxima (Rimu)	cmacuB367
Csa6G087970	Cucurbita moschata (Rifu)	cmocuB358
Csa6G087970	Cucurbita moschata (Rifu)	cmocuB889
Csa6G087970	Melon (DHL92) v3.5.1	cumeB442
Csa6G087970	Cucurbita pepo (Zucchini)	cpecuB142
Csa6G087970	Cucurbita pepo (Zucchini)	cpecuB322
Csa6G087970	Bottle gourd (USVL1VR-Ls)	culsiB402
Csa6G087970	Cucumber (Gy14) v2	cgybcuB282
Csa6G087970	Melon (DHL92) v3.6.1	cumedB422
Csa6G087970	Silver-seed gourd	carcuB0012
Csa6G087970	Silver-seed gourd	carcuB0995