CmaCh08G000450 (gene) Cucurbita maxima (Rimu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmaCh08G000450
Type	gene
Organism	Cucurbita maxima (Cucurbita maxima (Rimu))
Description	Coffea canephora DH200=94 genomic scaffold, scaffold_11
Location	Cma_Chr08 : 227861 .. 228267 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGTGGGAGACGAGGATGGGGACGGAGCATTCGAGCGAGTGAGATTGGGAGGTAGAAACATTGGAGCTTCAATGTCAGTCAGCCATGGAAGTGAAGGTAAATTGCCCAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAGGGTGTGAACAATTCAACATTGAATGAAAGTGAGGTCAGAATGGAAAGCCCAGGAGTTCGGTTCTTCATTGGAGATACGGATAAAAAATCACATCAAAATTACAGATCAGTTCATCAACTATGCCAATGGAGTGTAATGCTGCTTGTTCTTCTTGTACTCCTCTTTATGTTGGTTTTAGAGATGAGAACGTTTCGTTCTTAAGATTGTACTTTGATACTAATGGGAAAGCCATTGGATTGCAATGTTCCAAGTAG

mRNA sequence

ATGGAGGTGGGAGACGAGGATGGGGACGGAGCATTCGAGCGAGTGAGATTGGGAGGTAGAAACATTGGAGCTTCAATGTCAGTCAGCCATGGAAGTGAAGGTAAATTGCCCAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAGGGTGTGAACAATTCAACATTGAATGAAAGTGAGATCAGTTCATCAACTATGCCAATGGAGTGTAATGCTGCTTGTTCTTCTTGTACTCCTCTTTATGTTGGTTTTAGAGATGAGAACGTTTCGTTCTTAAGATTGTACTTTGATACTAATGGGAAAGCCATTGGATTGCAATGTTCCAAGTAG

Coding sequence (CDS)

ATGGAGGTGGGAGACGAGGATGGGGACGGAGCATTCGAGCGAGTGAGATTGGGAGGTAGAAACATTGGAGCTTCAATGTCAGTCAGCCATGGAAGTGAAGGTAAATTGCCCAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAGGGTGTGAACAATTCAACATTGAATGAAAGTGAGATCAGTTCATCAACTATGCCAATGGAGTGTAATGCTGCTTGTTCTTCTTGTACTCCTCTTTATGTTGGTTTTAGAGATGAGAACGTTTCGTTCTTAAGATTGTACTTTGATACTAATGGGAAAGCCATTGGATTGCAATGTTCCAAGTAG

Protein sequence

MEVGDEDGDGAFERVRLGGRNIGASMSVSHGSEGKLPNCCCINIYVNSNIQGVNNSTLNESEISSSTMPMECNAACSSCTPLYVGFRDENVSFLRLYFDTNGKAIGLQCSK

Homology

[Close]

BLAST of CmaCh08G000450 vs. TrEMBL
Match: A0A0A0KBZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087970 PE=4 SV=1)

HSP 1 Score: 89.7 bits (221), Expect = 2.4e-15
Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1  MEVGDEDGDGAFERVRLGGRNIGASMSVSHGSEGKLPNCCCINIYVNSNIQGVNNSTLNE 60
          ME  DE+   A E VRL G N+GASMSVSHG E KLPNCCCINIYVNSNIQGVNNSTLN 
Sbjct: 1  MEARDENE--ALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNG 60

Query: 61 SEI 64
           E+
Sbjct: 61 GEV 61

[Close]

BLAST of CmaCh08G000450 vs. TrEMBL
Match: G7KYF0_MEDTR (Transmembrane protein, putative OS=Medicago truncatula GN=MTR_7g098680 PE=4 SV=1)

HSP 1 Score: 69.3 bits (168), Expect = 3.3e-09
Identity = 30/57 (52.63%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 9  DGAFERVRLGGRNIGASMSVSHGS--EGKLPNCCCINIYVNSNIQGVNNSTLNESEI 64
          DG+FE + + G+N+GA+M + H S  +G+  +CCCINIYVN+N+QGV NS L++SE+
Sbjct: 7  DGSFEYINMDGKNVGATMRLHHRSNNKGESKDCCCINIYVNNNVQGVTNSVLHDSEV 63

[Close]

BLAST of CmaCh08G000450 vs. TrEMBL
Match: A0A0B2NZG4_GLYSO (ABC transporter C family member 5 OS=Glycine soja GN=glysoja_002484 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 11   AFERVRLGGRNIGASMSVSH-GSEGKLPNCCCINIYVNSNIQGVNNSTLNESEI 64
            +FE + L G+N+GA+M + H  S+G+  +CCCINIYVN+N+QGV+NS L+ SE+
Sbjct: 1582 SFEYINLDGKNVGATMRLQHRSSKGESKDCCCINIYVNNNVQGVSNSVLHGSEV 1635

[Close]

BLAST of CmaCh08G000450 vs. TrEMBL
Match: K7MYS2_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_19G168900 PE=4 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 2.8e-08
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 11 AFERVRLGGRNIGASMSVSH-GSEGKLPNCCCINIYVNSNIQGVNNSTLNESEI 64
          +FE + L G+N+GA+M + H  S+G+  +CCCINIYVN+N+QGV+NS L+ SE+
Sbjct: 9  SFEYINLDGKNVGATMRLQHRSSKGESKDCCCINIYVNNNVQGVSNSVLHGSEV 62

[Close]

BLAST of CmaCh08G000450 vs. TrEMBL
Match: A0A061DQD8_THECC (Uncharacterized protein OS=Theobroma cacao GN=TCM_003895 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 6.2e-08
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 6  EDGDGAFERVRLGGRNIGASMSVSHGSEGKLPNCCCINIYVNSNIQGVNNSTLNESEI 64
          E G G+F RV L G N GA+M +  G+ G+   CCCINIY NSNIQG NNS L  S I
Sbjct: 8  EIGLGSFNRVNLEGSNAGATMFIRRGTAGEPEGCCCINIYTNSNIQGANNSLLLGSNI 65

[Close]

BLAST of CmaCh08G000450 vs. NCBI nr
Match: gi|700191165|gb|KGN46369.1| (hypothetical protein Csa_6G087970 [Cucumis sativus])

HSP 1 Score: 89.7 bits (221), Expect = 3.4e-15
Identity = 47/63 (74.60%), Postives = 50/63 (79.37%), Query Frame = 1


Query: 1  MEVGDEDGDGAFERVRLGGRNIGASMSVSHGSEGKLPNCCCINIYVNSNIQGVNNSTLNE 60
          ME  DE+   A E VRL G N+GASMSVSHG E KLPNCCCINIYVNSNIQGVNNSTLN 
Sbjct: 1  MEARDENE--ALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNG 60

Query: 61 SEI 64
           E+
Sbjct: 61 GEV 61

[Close]

BLAST of CmaCh08G000450 vs. NCBI nr
Match: gi|357510209|ref|XP_003625393.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 69.3 bits (168), Expect = 4.7e-09
Identity = 30/57 (52.63%), Postives = 45/57 (78.95%), Query Frame = 1


Query: 9  DGAFERVRLGGRNIGASMSVSHGS--EGKLPNCCCINIYVNSNIQGVNNSTLNESEI 64
          DG+FE + + G+N+GA+M + H S  +G+  +CCCINIYVN+N+QGV NS L++SE+
Sbjct: 7  DGSFEYINMDGKNVGATMRLHHRSNNKGESKDCCCINIYVNNNVQGVTNSVLHDSEV 63

[Close]

BLAST of CmaCh08G000450 vs. NCBI nr
Match: gi|947046120|gb|KRG95749.1| (hypothetical protein GLYMA_19G168900 [Glycine max])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 11 AFERVRLGGRNIGASMSVSH-GSEGKLPNCCCINIYVNSNIQGVNNSTLNESEI 64
          +FE + L G+N+GA+M + H  S+G+  +CCCINIYVN+N+QGV+NS L+ SE+
Sbjct: 9  SFEYINLDGKNVGATMRLQHRSSKGESKDCCCINIYVNNNVQGVSNSVLHGSEV 62

[Close]

BLAST of CmaCh08G000450 vs. NCBI nr
Match: gi|734316978|gb|KHN02460.1| (ABC transporter C family member 5 [Glycine soja])

HSP 1 Score: 66.2 bits (160), Expect = 4.0e-08
Identity = 29/54 (53.70%), Postives = 43/54 (79.63%), Query Frame = 1


Query: 11   AFERVRLGGRNIGASMSVSH-GSEGKLPNCCCINIYVNSNIQGVNNSTLNESEI 64
            +FE + L G+N+GA+M + H  S+G+  +CCCINIYVN+N+QGV+NS L+ SE+
Sbjct: 1582 SFEYINLDGKNVGATMRLQHRSSKGESKDCCCINIYVNNNVQGVSNSVLHGSEV 1635

[Close]

BLAST of CmaCh08G000450 vs. NCBI nr
Match: gi|590715276|ref|XP_007050149.1| (Uncharacterized protein TCM_003895 [Theobroma cacao])

HSP 1 Score: 65.1 bits (157), Expect = 8.9e-08
Identity = 33/58 (56.90%), Postives = 38/58 (65.52%), Query Frame = 1


Query: 6  EDGDGAFERVRLGGRNIGASMSVSHGSEGKLPNCCCINIYVNSNIQGVNNSTLNESEI 64
          E G G+F RV L G N GA+M +  G+ G+   CCCINIY NSNIQG NNS L  S I
Sbjct: 8  EIGLGSFNRVNLEGSNAGATMFIRRGTAGEPEGCCCINIYTNSNIQGANNSLLLGSNI 65

The following BLAST results are available for this feature:

BLAST of CmaCh08G000450 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmaCh08G000450 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ5_CUCSA	2.4e-15	74.60	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087970 PE=4 SV=1	[more]
G7KYF0_MEDTR	3.3e-09	52.63	Transmembrane protein, putative OS=Medicago truncatula GN=MTR_7g098680 PE=4 SV=1	[more]
A0A0B2NZG4_GLYSO	2.8e-08	53.70	ABC transporter C family member 5 OS=Glycine soja GN=glysoja_002484 PE=4 SV=1	[more]
K7MYS2_SOYBN	2.8e-08	53.70	Uncharacterized protein OS=Glycine max GN=GLYMA_19G168900 PE=4 SV=1	[more]
A0A061DQD8_THECC	6.2e-08	56.90	Uncharacterized protein OS=Theobroma cacao GN=TCM_003895 PE=4 SV=1	[more]

BLAST of CmaCh08G000450 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmaCh08G000450 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191165\|gb\|KGN46369.1\|	3.4e-15	74.60	hypothetical protein Csa_6G087970 [Cucumis sativus]	[more]
gi\|357510209\|ref\|XP_003625393.1\|	4.7e-09	52.63	transmembrane protein, putative [Medicago truncatula]	[more]
gi\|947046120\|gb\|KRG95749.1\|	4.0e-08	53.70	hypothetical protein GLYMA_19G168900 [Glycine max]	[more]
gi\|734316978\|gb\|KHN02460.1\|	4.0e-08	53.70	ABC transporter C family member 5 [Glycine soja]	[more]
gi\|590715276\|ref\|XP_007050149.1\|	8.9e-08	56.90	Uncharacterized protein TCM_003895 [Theobroma cacao]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008152	metabolic process
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0008150	biological_process
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0042626	ATPase activity, coupled to transmembrane movement of substances
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmaCh08G000450.1	CmaCh08G000450.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita maxima
Date Performed: 2017-05-20


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472	FAMILY NOT NAMED	coord: 10..64 score: 8.0
None	No IPR available	PANTHER	PTHR33472:SF2	SUBFAMILY NOT NAMED	coord: 10..64 score: 8.0

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmaCh08G000450	Cucsa.348840	Cucumber (Gy14) v1	cgycmaB0955
CmaCh08G000450	Cla007061	Watermelon (97103) v1	cmawmB879
CmaCh08G000450	Csa6G087970	Cucumber (Chinese Long) v2	cmacuB903
CmaCh08G000450	ClCG06G001390	Watermelon (Charleston Gray)	cmawcgB805
CmaCh08G000450	CSPI06G06960	Wild cucumber (PI 183967)	cmacpiB923
CmaCh08G000450	CsaV3_6G007330	Cucumber (Chinese Long) v3	cmacucB1072
CmaCh08G000450	Cla97C06G110690	Watermelon (97103) v2	cmawmbB922
CmaCh08G000450	Bhi12G002082	Wax gourd	cmawgoB1096

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmaCh08G000450	Melon (DHL92) v3.6.1	cmamedB915
CmaCh08G000450	Melon (DHL92) v3.6.1	cmamedB936
CmaCh08G000450	Silver-seed gourd	carcmaB0023
CmaCh08G000450	Silver-seed gourd	carcmaB1090
CmaCh08G000450	Silver-seed gourd	carcmaB1361
CmaCh08G000450	Cucurbita maxima (Rimu)	cmacmaB384
CmaCh08G000450	Cucurbita maxima (Rimu)	cmacmaB466
CmaCh08G000450	Cucurbita moschata (Rifu)	cmacmoB899
CmaCh08G000450	Cucurbita moschata (Rifu)	cmacmoB913
CmaCh08G000450	Melon (DHL92) v3.5.1	cmameB817
CmaCh08G000450	Watermelon (Charleston Gray)	cmawcgB810
CmaCh08G000450	Cucurbita pepo (Zucchini)	cmacpeB905
CmaCh08G000450	Cucurbita pepo (Zucchini)	cmacpeB914
CmaCh08G000450	Bottle gourd (USVL1VR-Ls)	cmalsiB812
CmaCh08G000450	Bottle gourd (USVL1VR-Ls)	cmalsiB837
CmaCh08G000450	Cucumber (Gy14) v2	cgybcmaB457
CmaCh08G000450	Cucumber (Gy14) v2	cgybcmaB871