ClCG06G001390.1 (mRNA) Watermelon (Charleston Gray) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	ClCG06G001390.1
Type	mRNA
Organism	Citrullus lanatus (Watermelon (Charleston Gray))
Description	Unknown protein
Location	CG_Chr06 : 1467291 .. 1467653 (+)
Sequence length	363

Genome Viewer

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGCGAGAAGCAAGGACAAGGCATTCGAGCGGGTGAGGTTGGAAGGTGGAAACATAGGAGCCTCAATGTCAGTGAGCCATGGAGGAGAAGGTAAATTACACAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTTCTTCTTCTTTGGAGATATGGAACCAAAATCACATCAAAATAACACTTCATCACTTCATCAAATTCCCAAGCTATGGCAATGGAGTTTAATGCTTCTTCTTCTTCTTCTTCTACTCCTCTTTCTGTTACTTCTAGAAATGAAAATGCTTCATTCTTAA

mRNA sequence

ATGGAGGCGAGAAGCAAGGACAAGGCATTCGAGCGGGTGAGGTTGGAAGGTGGAAACATAGGAGCCTCAATGTCAGTGAGCCATGGAGGAGAAGGTAAATTACACAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTTCTTCTTCTTTGGAGATATGGAACCAAAATCACATCAAAATAACACTTCATCACTTCATCAAATTCCCAAGCTATGGCAATGGAGTTTAATGCTTCTTCTTCTTCTTCTTCTACTCCTCTTTCTGTTACTTCTAGAAATGAAAATGCTTCATTCTTAA

Coding sequence (CDS)

ATGGAGGCGAGAAGCAAGGACAAGGCATTCGAGCGGGTGAGGTTGGAAGGTGGAAACATAGGAGCCTCAATGTCAGTGAGCCATGGAGGAGAAGGTAAATTACACAACTGTTGTTGCATAAACATTTATGTAAACAGCAACATTCAAGGTGTGAACAATTCAACATTGAATGGGAGTGAGGTCAAAATGGGAAGCCCAGGAGTTTTCTTCTTCTTTGGAGATATGGAACCAAAATCACATCAAAATAACACTTCATCACTTCATCAAATTCCCAAGCTATGGCAATGGAGTTTAATGCTTCTTCTTCTTCTTCTTCTACTCCTCTTTCTGTTACTTCTAGAAATGAAAATGCTTCATTCTTAA

Protein sequence

MEARSKDKAFERVRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGVFFFFGDMEPKSHQNNTSSLHQIPKLWQWSLMLLLLLLLLLFLLLLEMKMLHS

Homology

[Close]

BLAST of ClCG06G001390.1 vs. TrEMBL
Match: A0A0A0KBZ5_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087970 PE=4 SV=1)

HSP 1 Score: 204.1 bits (518), Expect = 9.3e-50
Identity = 101/123 (82.11%), Postives = 108/123 (87.80%), Query Frame = 1


Query: 1   MEARSKDKAFERVRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSE 60
           MEAR +++A E VRLEGGN+GASMSVSHGGE KL NCCCINIYVNSNIQGVNNSTLNG E
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61  VKMGSPGVFFFFGDMEPKSHQNNTSSLHQIPKLWQWSLMLLLLLLL---LLFLLLLEMKM 120
           VKMGSPGVFF FGDMEPK HQN TSSLHQ PKLWQW LM+LLLL L   LLF+LLLE+KM
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

[Close]

BLAST of ClCG06G001390.1 vs. TAIR10
Match: AT2G20362.1 (AT2G20362.1 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 4.6e-08
Identity = 37/102 (36.27%), Postives = 52/102 (50.98%), Query Frame = 1


Query: 13  VRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGVFFFF 72
           + L G N+GA M      +    + C INIYVNSN+Q    S L GS+VK+  PGV    
Sbjct: 17  INLNGRNVGAVMVAPRDVDIASQSGCRINIYVNSNVQATCGSALIGSKVKLRDPGVHLHI 76

Query: 73  GDMEPKSHQNNTSSLHQIPKLWQWSLMLLLLL-LLLLFLLLL 114
            D+  K  +++T S  +   L +  L L+ L  + L+F+L L
Sbjct: 77  DDV--KMTRDDTISRQKEMTLIKVGLCLVCLFNMFLVFILFL 116

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BLAST of ClCG06G001390.1 vs. NCBI nr
Match: gi|700191165|gb|KGN46369.1| (hypothetical protein Csa_6G087970 [Cucumis sativus])

HSP 1 Score: 204.1 bits (518), Expect = 1.3e-49
Identity = 101/123 (82.11%), Postives = 108/123 (87.80%), Query Frame = 1


Query: 1   MEARSKDKAFERVRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSE 60
           MEAR +++A E VRLEGGN+GASMSVSHGGE KL NCCCINIYVNSNIQGVNNSTLNG E
Sbjct: 1   MEARDENEALEGVRLEGGNMGASMSVSHGGECKLPNCCCINIYVNSNIQGVNNSTLNGGE 60

Query: 61  VKMGSPGVFFFFGDMEPKSHQNNTSSLHQIPKLWQWSLMLLLLLLL---LLFLLLLEMKM 120
           VKMGSPGVFF FGDMEPK HQN TSSLHQ PKLWQW LM+LLLL L   LLF+LLLE+KM
Sbjct: 61  VKMGSPGVFFLFGDMEPKLHQNKTSSLHQNPKLWQWGLMILLLLFLLLPLLFMLLLEIKM 120

[Close]

BLAST of ClCG06G001390.1 vs. NCBI nr
Match: gi|947119218|gb|KRH67467.1| (hypothetical protein GLYMA_03G167700 [Glycine max])

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 51/119 (42.86%), Postives = 76/119 (63.87%), Query Frame = 1


Query: 1   MEARSKDKAFERVRLEGGNIGASMSVSHGG-EGKLHNCCCINIYVNSNIQGVNNSTLNGS 60
           M++  K  +FE + LEG N+GA+M V H   +G+  +CCCINIYVN+N+QGV+NS L+GS
Sbjct: 1   MDSNFKHDSFEYINLEGENVGATMRVRHRSTKGESKDCCCINIYVNNNVQGVSNSVLHGS 60

Query: 61  EVKMGSPGVFFFFGDMEPKSHQNNTSSLHQIPKLWQWS-----LMLLLLLLLLLFLLLL 114
           EV+M  PGV  +F +++      +  +L    +L+ W       + +L LL LLFLL+L
Sbjct: 61  EVRMRDPGVSLYFENLKV-----DKGTLSSNKRLFSWDNKIGFWLCILNLLALLFLLVL 114

[Close]

BLAST of ClCG06G001390.1 vs. NCBI nr
Match: gi|590715276|ref|XP_007050149.1| (Uncharacterized protein TCM_003895 [Theobroma cacao])

HSP 1 Score: 93.6 bits (231), Expect = 2.5e-16
Identity = 51/106 (48.11%), Postives = 65/106 (61.32%), Query Frame = 1


Query: 9   AFERVRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGV 68
           +F RV LEG N GA+M +  G  G+   CCCINIY NSNIQG NNS L GS +KM +PGV
Sbjct: 13  SFNRVNLEGSNAGATMFIRRGTAGEPEGCCCINIYTNSNIQGANNSLLLGSNIKMKNPGV 72

Query: 69  FFFFGD--MEPKSHQNNTSSLHQIPKLWQWSLMLLLLLLLLLFLLL 113
             +FGD  ++P S    T+       L   SL L + + ++LFLLL
Sbjct: 73  HLYFGDLTLDPGSITRRTAG----ATLEFGSLFLFVFIPVILFLLL 114

[Close]

BLAST of ClCG06G001390.1 vs. NCBI nr
Match: gi|357510209|ref|XP_003625393.1| (transmembrane protein, putative [Medicago truncatula])

HSP 1 Score: 92.8 bits (229), Expect = 4.3e-16
Identity = 48/115 (41.74%), Postives = 73/115 (63.48%), Query Frame = 1


Query: 1   MEARSKDKAFERVRLEGGNIGASMSVSH--GGEGKLHNCCCINIYVNSNIQGVNNSTLNG 60
           M+++ KD +FE + ++G N+GA+M + H    +G+  +CCCINIYVN+N+QGV NS L+ 
Sbjct: 1   MDSKFKDGSFEYINMDGKNVGATMRLHHRSNNKGESKDCCCINIYVNNNVQGVTNSVLHD 60

Query: 61  SEVKMGSPGVFFFFGDMEPKSHQNNTSSLHQIPKLWQWSLMLLLLLLLLLFLLLL 114
           SEV+M  PGV  +F D++        S          + L +L+LLL L+FLL+L
Sbjct: 61  SEVRMRDPGVSIYFEDLKFDKGIPTYSKRFCWGDKLGYCLCILILLLALIFLLVL 115

[Close]

BLAST of ClCG06G001390.1 vs. NCBI nr
Match: gi|703081936|ref|XP_010091821.1| (hypothetical protein L484_015890 [Morus notabilis])

HSP 1 Score: 92.0 bits (227), Expect = 7.4e-16
Identity = 48/106 (45.28%), Postives = 64/106 (60.38%), Query Frame = 1


Query: 11  ERVRLEGGNIGASMSVSHGGEGKLHNCCCINIYVNSNIQGVNNSTLNGSEVKMGSPGVFF 70
           ER++LEG N GAS S+  G     H+CCCINIY+N+NIQG NNS L  SEV M  PGV  
Sbjct: 59  ERIKLEGINAGASFSLDRGNGAAPHDCCCINIYINNNIQGANNSLLCESEVNMRDPGVHL 118

Query: 71  FFGDME----------PKSHQNNTSSLHQIPKLWQWSLMLLLLLLL 107
           FFGD++           +  + +TSS + +  L+ +   +LLLL L
Sbjct: 119 FFGDVKLGKRSLGRKRKREKKRSTSSAYNLGSLFAFVFSILLLLSL 164

The following BLAST results are available for this feature:

BLAST of ClCG06G001390.1 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KBZ5_CUCSA	9.3e-50	82.11	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G087970 PE=4 SV=1	[more]

BLAST of ClCG06G001390.1 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G20362.1	4.6e-08	36.27	unknown protein	[more]

BLAST of ClCG06G001390.1 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700191165\|gb\|KGN46369.1\|	1.3e-49	82.11	hypothetical protein Csa_6G087970 [Cucumis sativus]	[more]
gi\|947119218\|gb\|KRH67467.1\|	2.5e-16	42.86	hypothetical protein GLYMA_03G167700 [Glycine max]	[more]
gi\|590715276\|ref\|XP_007050149.1\|	2.5e-16	48.11	Uncharacterized protein TCM_003895 [Theobroma cacao]	[more]
gi\|357510209\|ref\|XP_003625393.1\|	4.3e-16	41.74	transmembrane protein, putative [Medicago truncatula]	[more]
gi\|703081936\|ref\|XP_010091821.1\|	7.4e-16	45.28	hypothetical protein L484_015890 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this mRNA:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006810	transport
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016887	ATPase activity
molecular_function	GO:0000166	nucleotide binding

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
ClCG06G001390	ClCG06G001390	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
ClCG06G001390.1	ClCG06G001390.1-protein	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
ClCG06G001390.1.cds1	ClCG06G001390.1.cds1	CDS

InterPro

Analysis Name: InterPro Annotations of watermelon (Charleston Gray)
Date Performed: 2016-09-28


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR33472	FAMILY NOT NAMED	coord: 1..118 score: 2.0
None	No IPR available	PANTHER	PTHR33472:SF2	SUBFAMILY NOT NAMED	coord: 1..118 score: 2.0